RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 LINC00482Q8N8I6 264 aa15.33■□□□□ 0.04
LIME1-210ENST00000621325 SPATA3Q8NHX4 192 aa15.33■□□□□ 0.04
LIME1-210ENST00000621325 HIGD1BQ9P298 99 aa15.33■□□□□ 0.04
LIME1-210ENST00000621325 CARD19Q96LW7 228 aa15.32■□□□□ 0.04
LIME1-210ENST00000621325 VWFP04275 2813 aa15.32■□□□□ 0.04
LIME1-210ENST00000621325 RHODO00212 210 aa15.32■□□□□ 0.04
LIME1-210ENST00000621325 IGHV3-53P01767 116 aa15.32■□□□□ 0.04
LIME1-210ENST00000621325 Q6ZTI0 123 aa15.32■□□□□ 0.04
LIME1-210ENST00000621325 ATP6V0E2Q8NHE4 81 aa15.31■□□□□ 0.04
LIME1-210ENST00000621325 RRN3P1Q2M238 152 aa15.3■□□□□ 0.04
LIME1-210ENST00000621325 TMEM263Q8WUH6 116 aaKnown RBP15.3■□□□□ 0.04
LIME1-210ENST00000621325 IGHV3-38A0A0C4DH36 116 aa15.29■□□□□ 0.04
LIME1-210ENST00000621325 NDUFV3P56181 108 aaKnown RBP15.29■□□□□ 0.04
LIME1-210ENST00000621325 ZNRF2Q8NHG8 242 aa15.29■□□□□ 0.04
LIME1-210ENST00000621325 PRADC1Q9BSG0 188 aa15.29■□□□□ 0.04
LIME1-210ENST00000621325 TENM1Q9UKZ4 2725 aa15.29■□□□□ 0.04
LIME1-210ENST00000621325 CEMP1Q6PRD7 247 aaPredicted RBP15.28■□□□□ 0.04
LIME1-210ENST00000621325 CSNK1G2-AS1Q8NCQ2 148 aa15.27■□□□□ 0.04
LIME1-210ENST00000621325 NOP10Q9NPE3 64 aaKnown RBP15.27■□□□□ 0.04
LIME1-210ENST00000621325 IGLV4-3A0A075B6K6 122 aa15.27■□□□□ 0.03
LIME1-210ENST00000621325 FAM104AQ969W3 186 aa15.26■□□□□ 0.03
LIME1-210ENST00000621325 PLAC8L1A1L4L8 177 aa15.26■□□□□ 0.03
LIME1-210ENST00000621325 CHCHD7Q9BUK0 85 aa15.25■□□□□ 0.03
LIME1-210ENST00000621325 MYMXA0A1B0GTQ4 84 aa15.25■□□□□ 0.03
LIME1-210ENST00000621325 TMEM170BQ5T4T1 132 aa15.24■□□□□ 0.03
LIME1-210ENST00000621325 PAPPA-AS1Q5QFB9 102 aa15.24■□□□□ 0.03
LIME1-210ENST00000621325 PPDPFLQ8WWR9 84 aa15.23■□□□□ 0.03
LIME1-210ENST00000621325 DNAJC30Q96LL9 226 aa15.23■□□□□ 0.03
LIME1-210ENST00000621325 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.23■□□□□ 0.03
LIME1-210ENST00000621325 IGKV2-29A2NJV5 120 aaPredicted RBP15.23■□□□□ 0.03
LIME1-210ENST00000621325 RNASE13Q5GAN3 156 aaKnown RBP15.23■□□□□ 0.03
LIME1-210ENST00000621325 CRLF1O75462 422 aa15.22■□□□□ 0.03
LIME1-210ENST00000621325 SFTA2Q6UW10 78 aa15.22■□□□□ 0.03
LIME1-210ENST00000621325 VCX2Q9H322 139 aa15.22■□□□□ 0.03
LIME1-210ENST00000621325 ATRQ13535 2644 aa15.22■□□□□ 0.03
LIME1-210ENST00000621325 C3orf56Q8N813 242 aa15.22■□□□□ 0.03
LIME1-210ENST00000621325 DAZ2Q13117 558 aaKnown RBP15.21■□□□□ 0.03
LIME1-210ENST00000621325 C16orf74Q96GX8 76 aa15.21■□□□□ 0.03
LIME1-210ENST00000621325 A0A0J9YXV3 536 aa15.21■□□□□ 0.02
LIME1-210ENST00000621325 GAGE2BQ13066 116 aa15.21■□□□□ 0.02
LIME1-210ENST00000621325 GAGE2EQ4V326 116 aa15.21■□□□□ 0.02
LIME1-210ENST00000621325 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.21■□□□□ 0.02
LIME1-210ENST00000621325 GAGE2DQ9UEU5 116 aa15.21■□□□□ 0.02
LIME1-210ENST00000621325 PYGO1Q9Y3Y4 419 aa15.21■□□□□ 0.02
LIME1-210ENST00000621325 TRAV4A0A0B4J268 109 aa15.2■□□□□ 0.02
LIME1-210ENST00000621325 ZNF815PA8K554 130 aa15.2■□□□□ 0.02
LIME1-210ENST00000621325 TSPEAR-AS2P59090 65 aa15.2■□□□□ 0.02
LIME1-210ENST00000621325 PLEKHB2Q96CS7 222 aa15.19■□□□□ 0.02
LIME1-210ENST00000621325 PSMB2P49721 201 aa15.19■□□□□ 0.02
LIME1-210ENST00000621325 FLNBO75369 2602 aaKnown RBP15.19■□□□□ 0.02
LIME1-210ENST00000621325 IFITM1P13164 125 aa15.18■□□□□ 0.02
LIME1-210ENST00000621325 HERVK_113P61574 105 aa15.18■□□□□ 0.02
LIME1-210ENST00000621325 TTC32Q5I0X7 151 aa15.18■□□□□ 0.02
LIME1-210ENST00000621325 SLC25A29Q8N8R3 303 aa15.18■□□□□ 0.02
LIME1-210ENST00000621325 UBE2D4Q9Y2X8 147 aa15.18■□□□□ 0.02
LIME1-210ENST00000621325 CSDC2Q9Y534 153 aaKnown RBP15.18■□□□□ 0.02
LIME1-210ENST00000621325 TEN1Q86WV5 123 aa15.18■□□□□ 0.02
LIME1-210ENST00000621325 AMELXQ99217 191 aa15.18■□□□□ 0.02
LIME1-210ENST00000621325 HIST1H4GQ99525 98 aa15.18■□□□□ 0.02
LIME1-210ENST00000621325 TRBV7-3A0A075B6L6 115 aa15.17■□□□□ 0.02
LIME1-210ENST00000621325 K7EQD1 137 aa15.17■□□□□ 0.02
LIME1-210ENST00000621325 MEIG1Q5JSS6 88 aa15.17■□□□□ 0.02
LIME1-210ENST00000621325 TRGV2A0A075B6R0 118 aa15.16■□□□□ 0.02
LIME1-210ENST00000621325 ZNF22P17026 224 aaPredicted RBP15.16■□□□□ 0.02
LIME1-210ENST00000621325 F8P00451 2351 aa15.16■□□□□ 0.02
LIME1-210ENST00000621325 TEP1Q99973 2627 aaKnown RBP15.15■□□□□ 0.02
LIME1-210ENST00000621325 IGHV3-64A0A075B6Q5 118 aa15.15■□□□□ 0.02
LIME1-210ENST00000621325 TMEM223A0PJW6 202 aa15.14■□□□□ 0.01
LIME1-210ENST00000621325 C5orf47Q569G3 176 aa15.14■□□□□ 0.01
LIME1-210ENST00000621325 SCGB1D4Q6XE38 83 aa15.14■□□□□ 0.01
LIME1-210ENST00000621325 OVOL2Q9BRP0 275 aa15.14■□□□□ 0.01
LIME1-210ENST00000621325 SPANXA1Q9NS26 97 aa15.14■□□□□ 0.01
LIME1-210ENST00000621325 RPL36AP83881 106 aaKnown RBP15.13■□□□□ 0.01
LIME1-210ENST00000621325 TAL2Q16559 108 aa15.13■□□□□ 0.01
LIME1-210ENST00000621325 RPL36ALQ969Q0 106 aaKnown RBP15.13■□□□□ 0.01
LIME1-210ENST00000621325 LOC107984156A0A0G2JMH3 177 aa15.13■□□□□ 0.01
LIME1-210ENST00000621325 TRBV10-1A0A0K0K1A3 114 aa15.13■□□□□ 0.01
LIME1-210ENST00000621325 SNCGO76070 127 aa15.13■□□□□ 0.01
LIME1-210ENST00000621325 C9orf66Q5T8R8 295 aa15.13■□□□□ 0.01
LIME1-210ENST00000621325 ARL17AQ8IVW1 177 aa15.13■□□□□ 0.01
LIME1-210ENST00000621325 TRRAPQ9Y4A5 3859 aa15.13■□□□□ 0.01
LIME1-210ENST00000621325 NTM-AS1Q6ZSK4 140 aa15.12■□□□□ 0.01
LIME1-210ENST00000621325 NBEAL2Q6ZNJ1 2754 aa15.12■□□□□ 0.01
LIME1-210ENST00000621325 LOC100131303A0A0U1RQF7 123 aa15.12■□□□□ 0.01
LIME1-210ENST00000621325 J3QQQ9 107 aa15.12■□□□□ 0.01
LIME1-210ENST00000621325 UBE2D3P61077 147 aa15.11■□□□□ 0.01
LIME1-210ENST00000621325 UBE2D2P62837 147 aa15.11■□□□□ 0.01
LIME1-210ENST00000621325 ANKRD29Q8N6D5 301 aa15.11■□□□□ 0.01
LIME1-210ENST00000621325 TMEM262E9PQX1 116 aa15.11■□□□□ 0.01
LIME1-210ENST00000621325 LINC00694P0DN24 101 aa15.11■□□□□ 0.01
LIME1-210ENST00000621325 MRPS36P82909 103 aaKnown RBP15.11■□□□□ 0.01
LIME1-210ENST00000621325 A0A0J9YY99 117 aa15.09■□□□□ 0.01
LIME1-210ENST00000621325 LGALS3P17931 250 aaKnown RBP15.08■□□□□ 0
LIME1-210ENST00000621325 LEPROTO15243 131 aa15.07■□□□□ 0
LIME1-210ENST00000621325 DAZ4Q86SG3 579 aaKnown RBP15.07■□□□□ 0
LIME1-210ENST00000621325 DAZ3Q9NR90 486 aaKnown RBP15.07■□□□□ 0
LIME1-210ENST00000621325 TRGV4A0A0C4DH28 118 aa15.07■□□□□ 0
LIME1-210ENST00000621325 X6R8D5 127 aa15.06■□□□□ 0
LIME1-210ENST00000621325 TRAV8-3A0A0A6YYJ7 113 aa15.06■□□□□ 0
LIME1-210ENST00000621325 LOC107984640A0A0U1RRK4 108 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms