RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 BPY2O14599 106 aa8.37□□□□□ -1.07
CLIP1-219ENST00000620786 ZNF22P17026 224 aaPredicted RBP8.37□□□□□ -1.07
CLIP1-219ENST00000620786 UPK3BQ9BT76 320 aa8.37□□□□□ -1.07
CLIP1-219ENST00000620786 IGLV4-69A0A075B6H9 119 aa8.37□□□□□ -1.07
CLIP1-219ENST00000620786 CASC2Q6XLA1 102 aa8.37□□□□□ -1.07
CLIP1-219ENST00000620786 H3BT86 120 aa8.37□□□□□ -1.07
CLIP1-219ENST00000620786 CD164L2Q6UWJ8 174 aa8.37□□□□□ -1.07
CLIP1-219ENST00000620786 OTOGLQ3ZCN5 2332 aa8.37□□□□□ -1.07
CLIP1-219ENST00000620786 NCOA6Q14686 2063 aaPredicted RBP8.37□□□□□ -1.07
CLIP1-219ENST00000620786 HRCT1Q6UXD1 115 aa8.36□□□□□ -1.07
CLIP1-219ENST00000620786 PIK3CD-AS1Q5SR53 167 aa8.36□□□□□ -1.07
CLIP1-219ENST00000620786 ATOX1O00244 68 aa8.36□□□□□ -1.07
CLIP1-219ENST00000620786 TRAV23DV6A0A075B6W5 121 aa8.36□□□□□ -1.07
CLIP1-219ENST00000620786 UBE2D3P61077 147 aa8.36□□□□□ -1.07
CLIP1-219ENST00000620786 FREM1Q5H8C1 2179 aa8.35□□□□□ -1.07
CLIP1-219ENST00000620786 FOXI1Q12951 378 aa8.35□□□□□ -1.07
CLIP1-219ENST00000620786 PRR9Q5T870 116 aa8.35□□□□□ -1.07
CLIP1-219ENST00000620786 SLPIP03973 132 aa8.35□□□□□ -1.07
CLIP1-219ENST00000620786 FAM236AA0A1B0GUQ0 79 aa8.35□□□□□ -1.07
CLIP1-219ENST00000620786 FAM236BA0A1B0GV22 79 aa8.35□□□□□ -1.07
CLIP1-219ENST00000620786 MED12LQ86YW9 2145 aa8.35□□□□□ -1.07
CLIP1-219ENST00000620786 WFDC2Q14508 124 aa8.35□□□□□ -1.07
CLIP1-219ENST00000620786 RNF185Q96GF1 192 aa8.34□□□□□ -1.07
CLIP1-219ENST00000620786 LINC00959A0A1B0GUT2 108 aa8.34□□□□□ -1.07
CLIP1-219ENST00000620786 LINC00474Q9P2X8 69 aa8.34□□□□□ -1.07
CLIP1-219ENST00000620786 PLAC8L1A1L4L8 177 aa8.34□□□□□ -1.07
CLIP1-219ENST00000620786 RNASE3P12724 160 aaKnown RBP8.34□□□□□ -1.07
CLIP1-219ENST00000620786 MRGPRG-AS1Q2M3A8 158 aa8.34□□□□□ -1.07
CLIP1-219ENST00000620786 ARHGAP21Q5T5U3 1957 aa8.34□□□□□ -1.07
CLIP1-219ENST00000620786 TSHBP01222 138 aa8.34□□□□□ -1.07
CLIP1-219ENST00000620786 EDN2P20800 178 aa8.34□□□□□ -1.07
CLIP1-219ENST00000620786 LINC00308Q8TCZ7 52 aa8.34□□□□□ -1.07
CLIP1-219ENST00000620786 RPL37AP8A6NKH3 93 aa8.33□□□□□ -1.08
CLIP1-219ENST00000620786 BRI3O95415 125 aa8.33□□□□□ -1.08
CLIP1-219ENST00000620786 SPINK6Q6UWN8 80 aa8.33□□□□□ -1.08
CLIP1-219ENST00000620786 SMIM20Q8N5G0 67 aa8.33□□□□□ -1.08
CLIP1-219ENST00000620786 C16orf95Q9H693 158 aa8.33□□□□□ -1.08
CLIP1-219ENST00000620786 KLLNB2CW77 178 aa8.33□□□□□ -1.08
CLIP1-219ENST00000620786 TCL1BO95988 128 aa8.33□□□□□ -1.08
CLIP1-219ENST00000620786 M0R378 163 aa8.32□□□□□ -1.08
CLIP1-219ENST00000620786 U3KQK5 164 aa8.32□□□□□ -1.08
CLIP1-219ENST00000620786 SHANK1Q9Y566 2161 aa8.32□□□□□ -1.08
CLIP1-219ENST00000620786 IGLV9-49A0A0B4J1Y8 123 aa8.32□□□□□ -1.08
CLIP1-219ENST00000620786 IGLV2-11P01706 119 aa8.31□□□□□ -1.08
CLIP1-219ENST00000620786 TRBV6-5A0A0K0K1A5 114 aa8.31□□□□□ -1.08
CLIP1-219ENST00000620786 TRBV27A0A0K0K1C4 114 aa8.31□□□□□ -1.08
CLIP1-219ENST00000620786 PYGO1Q9Y3Y4 419 aa8.31□□□□□ -1.08
CLIP1-219ENST00000620786 TAX1BP3O14907 124 aa8.31□□□□□ -1.08
CLIP1-219ENST00000620786 C6orf99Q4VX62 202 aa8.31□□□□□ -1.08
CLIP1-219ENST00000620786 SCXQ7RTU7 201 aa8.31□□□□□ -1.08
CLIP1-219ENST00000620786 SPATA12Q7Z6I5 190 aa8.31□□□□□ -1.08
CLIP1-219ENST00000620786 DHRS4-AS1Q9P1J3 65 aa8.31□□□□□ -1.08
CLIP1-219ENST00000620786 WFDC10BQ8IUB3 73 aa8.3□□□□□ -1.08
CLIP1-219ENST00000620786 IGLV5-52A0A0A0MRZ9 124 aa8.3□□□□□ -1.08
CLIP1-219ENST00000620786 A8MZ25 164 aa8.3□□□□□ -1.08
CLIP1-219ENST00000620786 PLCE1Q9P212 2302 aa8.3□□□□□ -1.08
CLIP1-219ENST00000620786 ODF3L2Q3SX64 289 aa8.3□□□□□ -1.08
CLIP1-219ENST00000620786 C1orf158Q8N1D5 194 aa8.3□□□□□ -1.08
CLIP1-219ENST00000620786 IGLV1-51P01701 117 aa8.3□□□□□ -1.08
CLIP1-219ENST00000620786 LRP4O75096 1905 aa8.29□□□□□ -1.08
CLIP1-219ENST00000620786 C11orf21Q9P2W6 132 aa8.29□□□□□ -1.08
CLIP1-219ENST00000620786 PTH2Q96A98 100 aa8.29□□□□□ -1.08
CLIP1-219ENST00000620786 BDP1A6H8Y1 2624 aa8.29□□□□□ -1.08
CLIP1-219ENST00000620786 USP17L23D6RBM5 183 aa8.29□□□□□ -1.08
CLIP1-219ENST00000620786 PTPRSQ13332 1948 aa8.29□□□□□ -1.08
CLIP1-219ENST00000620786 C10orf142B7Z368 130 aa8.28□□□□□ -1.08
CLIP1-219ENST00000620786 UBE2D2P62837 147 aa8.28□□□□□ -1.08
CLIP1-219ENST00000620786 SS18L2Q9UHA2 77 aa8.28□□□□□ -1.08
CLIP1-219ENST00000620786 CUL9Q8IWT3 2517 aa8.27□□□□□ -1.08
CLIP1-219ENST00000620786 A0A1W2PPR1 153 aa8.27□□□□□ -1.08
CLIP1-219ENST00000620786 KIAA1549Q9HCM3 1950 aa8.27□□□□□ -1.09
CLIP1-219ENST00000620786 Q6ZTC4 211 aa8.27□□□□□ -1.09
CLIP1-219ENST00000620786 B5MCH6 92 aa8.27□□□□□ -1.09
CLIP1-219ENST00000620786 C3orf84H3BNL1 204 aa8.27□□□□□ -1.09
CLIP1-219ENST00000620786 CCKP06307 115 aa8.27□□□□□ -1.09
CLIP1-219ENST00000620786 MRPS36P82909 103 aaKnown RBP8.26□□□□□ -1.09
CLIP1-219ENST00000620786 NRACQ8N912 160 aa8.26□□□□□ -1.09
CLIP1-219ENST00000620786 COL5A1P20908 1838 aaPredicted RBP8.26□□□□□ -1.09
CLIP1-219ENST00000620786 TTC28Q96AY4 2481 aa8.26□□□□□ -1.09
CLIP1-219ENST00000620786 M0QXV9 152 aa8.25□□□□□ -1.09
CLIP1-219ENST00000620786 COX17Q14061 63 aa8.25□□□□□ -1.09
CLIP1-219ENST00000620786 TNCP24821 2201 aa8.25□□□□□ -1.09
CLIP1-219ENST00000620786 PCNX3Q9H6A9 2034 aa8.25□□□□□ -1.09
CLIP1-219ENST00000620786 MAPKAPK5-AS1Q8N8E1 139 aa8.24□□□□□ -1.09
CLIP1-219ENST00000620786 C1orf134Q5TEV5 83 aa8.24□□□□□ -1.09
CLIP1-219ENST00000620786 CYSRT1A8MQ03 144 aa8.24□□□□□ -1.09
CLIP1-219ENST00000620786 TEX49A0A1B0GTD5 131 aa8.24□□□□□ -1.09
CLIP1-219ENST00000620786 TRIAP1O43715 76 aa8.24□□□□□ -1.09
CLIP1-219ENST00000620786 LINC00643Q86TS7 51 aa8.24□□□□□ -1.09
CLIP1-219ENST00000620786 CRIP2P52943 208 aaPredicted RBP8.24□□□□□ -1.09
CLIP1-219ENST00000620786 Q8IZM0 81 aa8.23□□□□□ -1.09
CLIP1-219ENST00000620786 CDC42SE2Q9NRR3 84 aa8.23□□□□□ -1.09
CLIP1-219ENST00000620786 RPL28P46779 137 aaKnown RBP8.23□□□□□ -1.09
CLIP1-219ENST00000620786 SDIM1Q6ZPB5 146 aa8.23□□□□□ -1.09
CLIP1-219ENST00000620786 RAI1Q7Z5J4 1906 aaPredicted RBP8.23□□□□□ -1.09
CLIP1-219ENST00000620786 Q6ZQY7 126 aa8.23□□□□□ -1.09
CLIP1-219ENST00000620786 ANKHD1Q8IWZ3 2542 aaKnown RBP8.23□□□□□ -1.09
CLIP1-219ENST00000620786 TIMM17BO60830 172 aa8.22□□□□□ -1.09
CLIP1-219ENST00000620786 ENHOQ6UWT2 76 aa8.22□□□□□ -1.09
CLIP1-219ENST00000620786 ZNF73O43830 326 aaPredicted RBP8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms