RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 SMCR5Q8TEV8 140 aa3.76□□□□□ -1.81
VPS13D-214ENST00000620676 ZMAT4Q9H898 229 aa3.76□□□□□ -1.81
VPS13D-214ENST00000620676 NKAPP1Q8N9T2 125 aa3.76□□□□□ -1.81
VPS13D-214ENST00000620676 FAM110DQ8TAY7 271 aaPredicted RBP3.76□□□□□ -1.81
VPS13D-214ENST00000620676 TLN2Q9Y4G6 2542 aa3.76□□□□□ -1.81
VPS13D-214ENST00000620676 TIMM17AQ99595 171 aa3.76□□□□□ -1.81
VPS13D-214ENST00000620676 GATA4P43694 442 aa3.76□□□□□ -1.81
VPS13D-214ENST00000620676 H0YGX0 51 aa3.75□□□□□ -1.81
VPS13D-214ENST00000620676 DSCR9P59020 149 aa3.75□□□□□ -1.81
VPS13D-214ENST00000620676 MINOS1Q5TGZ0 78 aa3.75□□□□□ -1.81
VPS13D-214ENST00000620676 ZNF843Q8N446 348 aa3.75□□□□□ -1.81
VPS13D-214ENST00000620676 A8MTW9 85 aa3.75□□□□□ -1.81
VPS13D-214ENST00000620676 MUC4Q99102 2169 aa3.75□□□□□ -1.81
VPS13D-214ENST00000620676 IGLV11-55A0A075B6I3 123 aa3.75□□□□□ -1.81
VPS13D-214ENST00000620676 LINC00269Q8N2A0 174 aa3.75□□□□□ -1.81
VPS13D-214ENST00000620676 EBI3Q14213 229 aa3.75□□□□□ -1.81
VPS13D-214ENST00000620676 POLQO75417 2590 aa3.75□□□□□ -1.81
VPS13D-214ENST00000620676 ARHGAP32A7KAX9 2087 aa3.75□□□□□ -1.81
VPS13D-214ENST00000620676 H3BQ85 93 aa3.75□□□□□ -1.81
VPS13D-214ENST00000620676 C9orf47Q6ZRZ4 202 aa3.75□□□□□ -1.81
VPS13D-214ENST00000620676 TRBV10-1A0A0K0K1A3 114 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 Q6JHZ5 121 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 USMG5Q96IX5 58 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 PF4P02776 101 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 CCKP06307 115 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 TRAV10A0A0B4J240 114 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 GYPEP15421 78 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 IMUPQ9GZP8 106 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 DEFB116Q30KQ4 102 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 TRBV6-1A0A0K0K1D8 114 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 UBE2D1P51668 147 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 Q6ZS92 163 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 MINOS1-NBL1R4GNA1 71 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 CRYGAP11844 174 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 RPL28P46779 137 aaKnown RBP3.74□□□□□ -1.81
VPS13D-214ENST00000620676 IGHV7-81A0A0B4J1V7 117 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 M0QY20 66 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 Q6ZSR3 168 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 C2orf48Q96LS8 159 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 ZFP36P26651 326 aaKnown RBP3.74□□□□□ -1.81
VPS13D-214ENST00000620676 GRNP28799 593 aaKnown RBP3.74□□□□□ -1.81
VPS13D-214ENST00000620676 C2orf16Q68DN1 1984 aa3.74□□□□□ -1.81
VPS13D-214ENST00000620676 C1orf158Q8N1D5 194 aa3.73□□□□□ -1.81
VPS13D-214ENST00000620676 SLURP1P55000 103 aa3.73□□□□□ -1.81
VPS13D-214ENST00000620676 LINC00846Q9NV44 126 aa3.73□□□□□ -1.81
VPS13D-214ENST00000620676 LINC00336Q6ZUF6 198 aa3.73□□□□□ -1.81
VPS13D-214ENST00000620676 NDUFA1O15239 70 aa3.73□□□□□ -1.81
VPS13D-214ENST00000620676 IGF2-ASQ6U949 168 aa3.73□□□□□ -1.81
VPS13D-214ENST00000620676 LINC00311Q8N616 119 aa3.73□□□□□ -1.81
VPS13D-214ENST00000620676 NDUFA4O00483 81 aa3.73□□□□□ -1.81
VPS13D-214ENST00000620676 C9orf116Q5BN46 136 aaPredicted RBP3.73□□□□□ -1.81
VPS13D-214ENST00000620676 CCDC140Q96MF4 163 aa3.73□□□□□ -1.81
VPS13D-214ENST00000620676 TECTAO75443 2155 aa3.73□□□□□ -1.81
VPS13D-214ENST00000620676 COX7BP24311 80 aa3.72□□□□□ -1.81
VPS13D-214ENST00000620676 GPHB5Q86YW7 130 aa3.72□□□□□ -1.81
VPS13D-214ENST00000620676 HIGD2BQ4VC39 106 aa3.72□□□□□ -1.81
VPS13D-214ENST00000620676 FSTL3O95633 263 aa3.72□□□□□ -1.81
VPS13D-214ENST00000620676 WFDC13Q8IUB5 93 aa3.72□□□□□ -1.81
VPS13D-214ENST00000620676 IGIPA6NJ69 53 aa3.72□□□□□ -1.81
VPS13D-214ENST00000620676 IGKV4-1P06312 121 aa3.72□□□□□ -1.81
VPS13D-214ENST00000620676 NCOA6Q14686 2063 aaPredicted RBP3.72□□□□□ -1.81
VPS13D-214ENST00000620676 UBE2BP63146 152 aa3.72□□□□□ -1.81
VPS13D-214ENST00000620676 TRBV7-7A0A0K0K1E9 115 aa3.71□□□□□ -1.81
VPS13D-214ENST00000620676 BPESC1Q9GZL8 116 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 THSD7BQ9C0I4 1608 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 A0A096LNI7 61 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 Q6ZTI0 123 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 ACANP16112 2415 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 XAGE1AQ9HD64 81 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 H0Y9J4 135 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 IGLV1-44P01699 117 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 IGHV4-38-2P0DP08 117 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 K7EQD1 137 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 NUP210LQ5VU65 1888 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 UBE2AP49459 152 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 ATP5EP2Q5VTU8 51 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 ZFAND2AQ8N6M9 145 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 TRAV7A0A075B6U4 112 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 FAM19A3Q7Z5A8 133 aa3.71□□□□□ -1.82
VPS13D-214ENST00000620676 JMJD7-PLA2G4BH0Y9G9 81 aa3.7□□□□□ -1.82
VPS13D-214ENST00000620676 FHL2Q14192 279 aa3.7□□□□□ -1.82
VPS13D-214ENST00000620676 FAM218AQ96MZ4 157 aa3.7□□□□□ -1.82
VPS13D-214ENST00000620676 IGHV4-61A0A0C4DH41 118 aa3.7□□□□□ -1.82
VPS13D-214ENST00000620676 C19orf84I3L1E1 186 aa3.7□□□□□ -1.82
VPS13D-214ENST00000620676 HIGD2AQ9BW72 106 aa3.7□□□□□ -1.82
VPS13D-214ENST00000620676 RNASE3P12724 160 aaKnown RBP3.7□□□□□ -1.82
VPS13D-214ENST00000620676 Q6ZSN1 163 aa3.7□□□□□ -1.82
VPS13D-214ENST00000620676 Q8N2B8 174 aa3.7□□□□□ -1.82
VPS13D-214ENST00000620676 RETNLBQ9BQ08 111 aa3.7□□□□□ -1.82
VPS13D-214ENST00000620676 CEP295Q9C0D2 2601 aa3.7□□□□□ -1.82
VPS13D-214ENST00000620676 SERTAD4-AS1Q5TG53 156 aa3.69□□□□□ -1.82
VPS13D-214ENST00000620676 C9orf85Q96MD7 179 aa3.69□□□□□ -1.82
VPS13D-214ENST00000620676 LOC100131303A0A0U1RQF7 123 aa3.69□□□□□ -1.82
VPS13D-214ENST00000620676 MRPS36P82909 103 aaKnown RBP3.69□□□□□ -1.82
VPS13D-214ENST00000620676 LY6DQ14210 128 aa3.69□□□□□ -1.82
VPS13D-214ENST00000620676 CCL18P55774 89 aa3.69□□□□□ -1.82
VPS13D-214ENST00000620676 TNFRSF13BO14836 293 aaPredicted RBP3.69□□□□□ -1.82
VPS13D-214ENST00000620676 TMEM89A2RUT3 159 aa3.69□□□□□ -1.82
VPS13D-214ENST00000620676 RPS28P62857 69 aaKnown RBP3.69□□□□□ -1.82
VPS13D-214ENST00000620676 EXPH5Q8NEV8 1989 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms