RNA–Protein interactions for RNA: ENST00000617339.4

SHROOM1-208, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SHROOM1, Length 3,638 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-208ENST00000617339 SUMO4Q6EEV6 95 aa10.66□□□□□ -0.7
SHROOM1-208ENST00000617339 ZNRF2Q8NHG8 242 aa10.65□□□□□ -0.7
SHROOM1-208ENST00000617339 SDHAF1A6NFY7 115 aa10.65□□□□□ -0.7
SHROOM1-208ENST00000617339 PMVKQ15126 192 aa10.65□□□□□ -0.7
SHROOM1-208ENST00000617339 SLC25A29Q8N8R3 303 aa10.65□□□□□ -0.7
SHROOM1-208ENST00000617339 ZNF580Q9UK33 172 aa10.65□□□□□ -0.7
SHROOM1-208ENST00000617339 BAHCC1Q9P281 2608 aa10.65□□□□□ -0.7
SHROOM1-208ENST00000617339 HIVEP1P15822 2718 aa10.65□□□□□ -0.71
SHROOM1-208ENST00000617339 AKAP9Q99996 3911 aa10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 IGHV1OR15-1A0A075B7D0 117 aa10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 K7EMT4 169 aa10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 EIF4EBP3O60516 100 aaPredicted RBP10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 IGHV3-33P01772 117 aa10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 DEFB130BP0DP73 79 aa10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 DEFB130AP0DP74 79 aa10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 CHCHD5Q9BSY4 110 aa10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 LINC01620Q4KN68 170 aa10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 LINC01006Q8NI28 216 aa10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 RBMY1A1P0DJD3 496 aaKnown RBP10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 RBMY1CP0DJD4 496 aa10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 RPL13AP40429 203 aaKnown RBP10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 RBMY1FQ15415 496 aaKnown RBP10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 CEMP1Q6PRD7 247 aaPredicted RBP10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 SBSPONQ8IVN8 264 aa10.64□□□□□ -0.71
SHROOM1-208ENST00000617339 C2orf82Q6UX34 121 aa10.63□□□□□ -0.71
SHROOM1-208ENST00000617339 TNFRSF18Q9Y5U5 241 aa10.62□□□□□ -0.71
SHROOM1-208ENST00000617339 H3BMM0 161 aa10.62□□□□□ -0.71
SHROOM1-208ENST00000617339 ATXN8Q156A1 80 aa10.62□□□□□ -0.71
SHROOM1-208ENST00000617339 KRTAP1-3Q8IUG1 177 aa10.62□□□□□ -0.71
SHROOM1-208ENST00000617339 UBE2WQ96B02 151 aa10.62□□□□□ -0.71
SHROOM1-208ENST00000617339 ODF3Q96PU9 254 aa10.62□□□□□ -0.71
SHROOM1-208ENST00000617339 LENEPQ9Y5L5 61 aa10.62□□□□□ -0.71
SHROOM1-208ENST00000617339 KLLNB2CW77 178 aa10.61□□□□□ -0.71
SHROOM1-208ENST00000617339 KLK9Q2XQG4 91 aa10.61□□□□□ -0.71
SHROOM1-208ENST00000617339 CLEC2BQ92478 149 aa10.6□□□□□ -0.71
SHROOM1-208ENST00000617339 IGHV4-4A0A075B6R2 117 aa10.6□□□□□ -0.71
SHROOM1-208ENST00000617339 TMEM263Q8WUH6 116 aaKnown RBP10.6□□□□□ -0.71
SHROOM1-208ENST00000617339 DEFB4AO15263 64 aa10.6□□□□□ -0.71
SHROOM1-208ENST00000617339 TRIAP1O43715 76 aa10.59□□□□□ -0.71
SHROOM1-208ENST00000617339 SPXQ9BT56 116 aa10.59□□□□□ -0.71
SHROOM1-208ENST00000617339 PAPPA-AS1Q5QFB9 102 aa10.59□□□□□ -0.71
SHROOM1-208ENST00000617339 RBMY1BA6NDE4 496 aaKnown RBP10.59□□□□□ -0.71
SHROOM1-208ENST00000617339 RBMY1EA6NEQ0 496 aaKnown RBP10.59□□□□□ -0.71
SHROOM1-208ENST00000617339 IGIPA6NJ69 53 aa10.59□□□□□ -0.71
SHROOM1-208ENST00000617339 RBMY1DP0C7P1 496 aaKnown RBP10.59□□□□□ -0.71
SHROOM1-208ENST00000617339 A0A0J9YXV3 536 aa10.58□□□□□ -0.72
SHROOM1-208ENST00000617339 FAM110AQ9BQ89 295 aa10.58□□□□□ -0.72
SHROOM1-208ENST00000617339 INSP01308 110 aa10.58□□□□□ -0.72
SHROOM1-208ENST00000617339 TRGV11A0A075B6L2 103 aa10.57□□□□□ -0.72
SHROOM1-208ENST00000617339 MAP6D1Q9H9H5 199 aa10.57□□□□□ -0.72
SHROOM1-208ENST00000617339 A0A096LPF7 62 aa10.57□□□□□ -0.72
SHROOM1-208ENST00000617339 RS1O15537 224 aa10.57□□□□□ -0.72
SHROOM1-208ENST00000617339 C9orf153Q5TBE3 101 aa10.57□□□□□ -0.72
SHROOM1-208ENST00000617339 AMELXQ99217 191 aa10.57□□□□□ -0.72
SHROOM1-208ENST00000617339 M0QXV9 152 aa10.56□□□□□ -0.72
SHROOM1-208ENST00000617339 TRAV8-3A0A0A6YYJ7 113 aa10.56□□□□□ -0.72
SHROOM1-208ENST00000617339 DEFB114Q30KQ6 69 aa10.56□□□□□ -0.72
SHROOM1-208ENST00000617339 C4orf3Q8WVX3 66 aa10.56□□□□□ -0.72
SHROOM1-208ENST00000617339 TRGV4A0A0C4DH28 118 aa10.56□□□□□ -0.72
SHROOM1-208ENST00000617339 A8MZ25 164 aa10.56□□□□□ -0.72
SHROOM1-208ENST00000617339 NSD1Q96L73 2696 aaPredicted RBP10.55□□□□□ -0.72
SHROOM1-208ENST00000617339 VCYO14598 125 aa10.55□□□□□ -0.72
SHROOM1-208ENST00000617339 BRI3O95415 125 aa10.55□□□□□ -0.72
SHROOM1-208ENST00000617339 FSHBP01225 129 aa10.55□□□□□ -0.72
SHROOM1-208ENST00000617339 FAM19A4Q96LR4 140 aa10.55□□□□□ -0.72
SHROOM1-208ENST00000617339 TRBV10-2A0A0K0K1G8 114 aa10.55□□□□□ -0.72
SHROOM1-208ENST00000617339 DAND5Q8N907 189 aa10.55□□□□□ -0.72
SHROOM1-208ENST00000617339 LINC00315P59091 139 aa10.54□□□□□ -0.72
SHROOM1-208ENST00000617339 Q6ZSN1 163 aa10.54□□□□□ -0.72
SHROOM1-208ENST00000617339 PPDPFQ9H3Y8 114 aa10.54□□□□□ -0.72
SHROOM1-208ENST00000617339 NOP10Q9NPE3 64 aaKnown RBP10.54□□□□□ -0.72
SHROOM1-208ENST00000617339 A0A0U1RRA0 63 aa10.54□□□□□ -0.72
SHROOM1-208ENST00000617339 LGALS9O00182 355 aa10.54□□□□□ -0.72
SHROOM1-208ENST00000617339 ZNF22P17026 224 aaPredicted RBP10.54□□□□□ -0.72
SHROOM1-208ENST00000617339 ZNF415Q09FC8 603 aa10.54□□□□□ -0.72
SHROOM1-208ENST00000617339 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.53□□□□□ -0.72
SHROOM1-208ENST00000617339 IGKV2-29A2NJV5 120 aaPredicted RBP10.53□□□□□ -0.72
SHROOM1-208ENST00000617339 LINC00482Q8N8I6 264 aa10.53□□□□□ -0.72
SHROOM1-208ENST00000617339 H7C423 109 aa10.53□□□□□ -0.72
SHROOM1-208ENST00000617339 LEPROTO15243 131 aa10.53□□□□□ -0.72
SHROOM1-208ENST00000617339 TMEM141Q96I45 108 aa10.53□□□□□ -0.72
SHROOM1-208ENST00000617339 EDA2RQ9HAV5 297 aa10.53□□□□□ -0.72
SHROOM1-208ENST00000617339 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.52□□□□□ -0.72
SHROOM1-208ENST00000617339 PPP1R17O96001 155 aa10.52□□□□□ -0.72
SHROOM1-208ENST00000617339 ICOSQ9Y6W8 199 aa10.52□□□□□ -0.72
SHROOM1-208ENST00000617339 KIF25-AS1Q9Y6Z4 181 aa10.52□□□□□ -0.72
SHROOM1-208ENST00000617339 A0A0J9YXY3 114 aa10.52□□□□□ -0.73
SHROOM1-208ENST00000617339 FAM236AA0A1B0GUQ0 79 aa10.52□□□□□ -0.73
SHROOM1-208ENST00000617339 FAM236BA0A1B0GV22 79 aa10.52□□□□□ -0.73
SHROOM1-208ENST00000617339 TMEM223A0PJW6 202 aa10.52□□□□□ -0.73
SHROOM1-208ENST00000617339 POLR2KP53803 58 aaKnown RBP10.52□□□□□ -0.73
SHROOM1-208ENST00000617339 A0A0B4J2C4 111 aa10.51□□□□□ -0.73
SHROOM1-208ENST00000617339 M0QY20 66 aa10.51□□□□□ -0.73
SHROOM1-208ENST00000617339 M0R2P5 195 aa10.51□□□□□ -0.73
SHROOM1-208ENST00000617339 COX6CP09669 75 aa10.51□□□□□ -0.73
SHROOM1-208ENST00000617339 ODF3L2Q3SX64 289 aa10.51□□□□□ -0.73
SHROOM1-208ENST00000617339 DEFB121Q5J5C9 76 aa10.5□□□□□ -0.73
SHROOM1-208ENST00000617339 TIMM17AQ99595 171 aa10.5□□□□□ -0.73
SHROOM1-208ENST00000617339 ADAMTSL4-AS1Q5T5F5 129 aa10.5□□□□□ -0.73
SHROOM1-208ENST00000617339 TRRAPQ9Y4A5 3859 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms