RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 SERP2Q8N6R1 65 aa7.79□□□□□ -1.16
LIG1-220ENST00000601091 NRACQ8N912 160 aa7.79□□□□□ -1.16
LIG1-220ENST00000601091 CYSTM1Q9H1C7 97 aa7.79□□□□□ -1.16
LIG1-220ENST00000601091 CHD8Q9HCK8 2581 aa7.79□□□□□ -1.16
LIG1-220ENST00000601091 PRO1854Q9UHT4 67 aa7.79□□□□□ -1.16
LIG1-220ENST00000601091 LGALS9O00182 355 aa7.79□□□□□ -1.16
LIG1-220ENST00000601091 HILS1P60008 231 aa7.79□□□□□ -1.16
LIG1-220ENST00000601091 PIFOQ8TCI5 191 aa7.79□□□□□ -1.16
LIG1-220ENST00000601091 TLN2Q9Y4G6 2542 aa7.79□□□□□ -1.16
LIG1-220ENST00000601091 TRBV7-7A0A0K0K1E9 115 aa7.78□□□□□ -1.16
LIG1-220ENST00000601091 RNF223E7ERA6 249 aa7.78□□□□□ -1.16
LIG1-220ENST00000601091 USP9YO00507 2555 aaPredicted RBP7.78□□□□□ -1.16
LIG1-220ENST00000601091 IGHV4-4A0A075B6R2 117 aa7.78□□□□□ -1.16
LIG1-220ENST00000601091 C19orf84I3L1E1 186 aa7.78□□□□□ -1.16
LIG1-220ENST00000601091 RPL39P62891 51 aaKnown RBP7.78□□□□□ -1.16
LIG1-220ENST00000601091 LINC00474Q9P2X8 69 aa7.78□□□□□ -1.16
LIG1-220ENST00000601091 SPTBN4Q9H254 2564 aa7.77□□□□□ -1.16
LIG1-220ENST00000601091 CXCL5P42830 114 aa7.77□□□□□ -1.17
LIG1-220ENST00000601091 C11orf86A6NJI1 115 aa7.77□□□□□ -1.17
LIG1-220ENST00000601091 INSP01308 110 aa7.77□□□□□ -1.17
LIG1-220ENST00000601091 TRGV2A0A075B6R0 118 aa7.77□□□□□ -1.17
LIG1-220ENST00000601091 IGKV3OR2-268A0A0C4DH90 116 aa7.77□□□□□ -1.17
LIG1-220ENST00000601091 PRR9Q5T870 116 aa7.77□□□□□ -1.17
LIG1-220ENST00000601091 LAMTOR3Q9UHA4 124 aa7.77□□□□□ -1.17
LIG1-220ENST00000601091 HIST1H4AP62805 103 aaKnown RBP7.76□□□□□ -1.17
LIG1-220ENST00000601091 DCANP1Q8TF63 244 aa7.76□□□□□ -1.17
LIG1-220ENST00000601091 TRGV1A0A0A0MS02 117 aa7.76□□□□□ -1.17
LIG1-220ENST00000601091 A0A1W2PPR1 153 aa7.76□□□□□ -1.17
LIG1-220ENST00000601091 RPL36AP83881 106 aaKnown RBP7.76□□□□□ -1.17
LIG1-220ENST00000601091 SPTSSBQ8NFR3 76 aa7.76□□□□□ -1.17
LIG1-220ENST00000601091 RPL36ALQ969Q0 106 aaKnown RBP7.76□□□□□ -1.17
LIG1-220ENST00000601091 RBMY1BA6NDE4 496 aaKnown RBP7.75□□□□□ -1.17
LIG1-220ENST00000601091 RBMY1EA6NEQ0 496 aaKnown RBP7.75□□□□□ -1.17
LIG1-220ENST00000601091 LINC01619G3V211 115 aa7.75□□□□□ -1.17
LIG1-220ENST00000601091 RBMY1DP0C7P1 496 aaKnown RBP7.75□□□□□ -1.17
LIG1-220ENST00000601091 RBMY1A1P0DJD3 496 aaKnown RBP7.75□□□□□ -1.17
LIG1-220ENST00000601091 RBMY1FQ15415 496 aaKnown RBP7.75□□□□□ -1.17
LIG1-220ENST00000601091 ATXN8Q156A1 80 aa7.75□□□□□ -1.17
LIG1-220ENST00000601091 A0A0J9YX75 114 aa7.75□□□□□ -1.17
LIG1-220ENST00000601091 LINC00643Q86TS7 51 aa7.75□□□□□ -1.17
LIG1-220ENST00000601091 CENPEQ02224 2701 aa7.75□□□□□ -1.17
LIG1-220ENST00000601091 DCHS2Q6V1P9 2916 aa7.74□□□□□ -1.17
LIG1-220ENST00000601091 POM121L12Q8N7R1 296 aa7.74□□□□□ -1.17
LIG1-220ENST00000601091 XCL2Q9UBD3 114 aa7.74□□□□□ -1.17
LIG1-220ENST00000601091 NDUFA12Q9UI09 145 aa7.74□□□□□ -1.17
LIG1-220ENST00000601091 A0A0J9YXV3 536 aa7.74□□□□□ -1.17
LIG1-220ENST00000601091 PSMG3-AS1Q96PY0 264 aa7.74□□□□□ -1.17
LIG1-220ENST00000601091 COL27A1Q8IZC6 1860 aaPredicted RBP7.74□□□□□ -1.17
LIG1-220ENST00000601091 NAV2Q8IVL1 2488 aa7.73□□□□□ -1.17
LIG1-220ENST00000601091 IGHV3-16A0A0C4DH30 117 aa7.73□□□□□ -1.17
LIG1-220ENST00000601091 LEPROTO15243 131 aa7.73□□□□□ -1.17
LIG1-220ENST00000601091 CRIP2P52943 208 aaPredicted RBP7.73□□□□□ -1.17
LIG1-220ENST00000601091 TOMM7Q9P0U1 55 aa7.73□□□□□ -1.17
LIG1-220ENST00000601091 RNASE3P12724 160 aaKnown RBP7.73□□□□□ -1.17
LIG1-220ENST00000601091 RPL18AQ02543 176 aaKnown RBP7.73□□□□□ -1.17
LIG1-220ENST00000601091 ADARB2-AS1A8MUL3 147 aa7.72□□□□□ -1.17
LIG1-220ENST00000601091 IGHV4OR15-8A0A075B7B6 117 aa7.72□□□□□ -1.17
LIG1-220ENST00000601091 A0A087WW49 117 aa7.72□□□□□ -1.17
LIG1-220ENST00000601091 IGHV3-38A0A0C4DH36 116 aa7.72□□□□□ -1.17
LIG1-220ENST00000601091 IGHV3-53P01767 116 aa7.72□□□□□ -1.17
LIG1-220ENST00000601091 CFC1BP0CG36 223 aa7.72□□□□□ -1.17
LIG1-220ENST00000601091 CFC1P0CG37 223 aa7.72□□□□□ -1.17
LIG1-220ENST00000601091 PSMB8P28062 276 aa7.72□□□□□ -1.17
LIG1-220ENST00000601091 USP9XQ93008 2570 aaPredicted RBP7.72□□□□□ -1.17
LIG1-220ENST00000601091 FAM222AQ5U5X8 452 aa7.72□□□□□ -1.17
LIG1-220ENST00000601091 IGKV3D-7A0A0C4DH55 119 aa7.71□□□□□ -1.17
LIG1-220ENST00000601091 TMEM256-PLSCR3K7ERE1 68 aa7.71□□□□□ -1.17
LIG1-220ENST00000601091 DEFB136Q30KP8 78 aa7.71□□□□□ -1.17
LIG1-220ENST00000601091 RNASE13Q5GAN3 156 aaKnown RBP7.71□□□□□ -1.17
LIG1-220ENST00000601091 C20orf203Q8NBC4 194 aa7.71□□□□□ -1.17
LIG1-220ENST00000601091 IGLV2-18A0A075B6J9 118 aa7.71□□□□□ -1.18
LIG1-220ENST00000601091 TRGV4A0A0C4DH28 118 aa7.71□□□□□ -1.18
LIG1-220ENST00000601091 CMC4P56277 68 aaPredicted RBP7.71□□□□□ -1.18
LIG1-220ENST00000601091 CELSR1Q9NYQ6 3014 aa7.71□□□□□ -1.18
LIG1-220ENST00000601091 C8orf87E5RJ46 101 aa7.7□□□□□ -1.18
LIG1-220ENST00000601091 K7EQG2 157 aa7.7□□□□□ -1.18
LIG1-220ENST00000601091 DNAL4O96015 105 aa7.7□□□□□ -1.18
LIG1-220ENST00000601091 SLURP1P55000 103 aa7.7□□□□□ -1.18
LIG1-220ENST00000601091 KLLNB2CW77 178 aa7.7□□□□□ -1.18
LIG1-220ENST00000601091 SDIM1Q6ZPB5 146 aa7.7□□□□□ -1.18
LIG1-220ENST00000601091 OPRPNQ99935 248 aaPredicted RBP7.7□□□□□ -1.18
LIG1-220ENST00000601091 Q6ZS46 218 aa7.7□□□□□ -1.18
LIG1-220ENST00000601091 POLQO75417 2590 aa7.7□□□□□ -1.18
LIG1-220ENST00000601091 SLC25A29Q8N8R3 303 aa7.69□□□□□ -1.18
LIG1-220ENST00000601091 ZNF625Q96I27 306 aaPredicted RBP7.69□□□□□ -1.18
LIG1-220ENST00000601091 MUSTN1Q8IVN3 82 aa7.69□□□□□ -1.18
LIG1-220ENST00000601091 A0A0A0MQY5 61 aa7.69□□□□□ -1.18
LIG1-220ENST00000601091 IGLV1-40P01703 118 aa7.69□□□□□ -1.18
LIG1-220ENST00000601091 POLR2KP53803 58 aaKnown RBP7.69□□□□□ -1.18
LIG1-220ENST00000601091 NDUFA11Q86Y39 141 aa7.69□□□□□ -1.18
LIG1-220ENST00000601091 TRBV27A0A0K0K1C4 114 aa7.69□□□□□ -1.18
LIG1-220ENST00000601091 LYRM9A8MSI8 78 aa7.69□□□□□ -1.18
LIG1-220ENST00000601091 FHL2Q14192 279 aa7.69□□□□□ -1.18
LIG1-220ENST00000601091 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.68□□□□□ -1.18
LIG1-220ENST00000601091 IGKV2-29A2NJV5 120 aaPredicted RBP7.68□□□□□ -1.18
LIG1-220ENST00000601091 A0A0J9YY99 117 aa7.68□□□□□ -1.18
LIG1-220ENST00000601091 ACYP1P07311 99 aa7.68□□□□□ -1.18
LIG1-220ENST00000601091 TRAV8-3A0A0A6YYJ7 113 aa7.68□□□□□ -1.18
LIG1-220ENST00000601091 TRBV6-5A0A0K0K1A5 114 aa7.68□□□□□ -1.18
LIG1-220ENST00000601091 M0QY20 66 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 150 ms