RNA–Protein interactions for RNA: ENST00000598570.5

USHBP1-209, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-209ENST00000598570 USP17L23D6RBM5 183 aa11.5□□□□□ -0.57
USHBP1-209ENST00000598570 AMMECR1LQ6DCA0 310 aa11.5□□□□□ -0.57
USHBP1-209ENST00000598570 CLPSL2Q6UWE3 100 aa11.5□□□□□ -0.57
USHBP1-209ENST00000598570 OR5A1Q8NGJ0 315 aa11.5□□□□□ -0.57
USHBP1-209ENST00000598570 FAM104AQ969W3 186 aa11.5□□□□□ -0.57
USHBP1-209ENST00000598570 DGAT2L7PQ6IED9 249 aa11.49□□□□□ -0.57
USHBP1-209ENST00000598570 CLRN3Q8NCR9 226 aa11.49□□□□□ -0.57
USHBP1-209ENST00000598570 UBE2D4Q9Y2X8 147 aa11.49□□□□□ -0.57
USHBP1-209ENST00000598570 PRSS1P07477 247 aa11.48□□□□□ -0.57
USHBP1-209ENST00000598570 ZNF664Q8N3J9 261 aa11.48□□□□□ -0.57
USHBP1-209ENST00000598570 PRELID3AQ96N28 172 aa11.48□□□□□ -0.57
USHBP1-209ENST00000598570 FCER1GP30273 86 aa11.47□□□□□ -0.57
USHBP1-209ENST00000598570 RHEBQ15382 184 aa11.47□□□□□ -0.57
USHBP1-209ENST00000598570 RNASEKQ6P5S7 137 aaKnown RBP11.47□□□□□ -0.57
USHBP1-209ENST00000598570 Q8N1X5 172 aa11.47□□□□□ -0.57
USHBP1-209ENST00000598570 IGLV10-54A0A075B6I4 117 aa11.46□□□□□ -0.57
USHBP1-209ENST00000598570 CCL25O15444 150 aa11.46□□□□□ -0.57
USHBP1-209ENST00000598570 SMAGPQ0VAQ4 97 aa11.46□□□□□ -0.57
USHBP1-209ENST00000598570 TMEM101Q96IK0 257 aa11.46□□□□□ -0.57
USHBP1-209ENST00000598570 FAM30AQ9NZY2 134 aa11.46□□□□□ -0.57
USHBP1-209ENST00000598570 LINC00959A0A1B0GUT2 108 aa11.45□□□□□ -0.58
USHBP1-209ENST00000598570 CNBPP62633 177 aaKnown RBP11.45□□□□□ -0.58
USHBP1-209ENST00000598570 FOXI1Q12951 378 aa11.45□□□□□ -0.58
USHBP1-209ENST00000598570 CHCHD10Q8WYQ3 142 aaPredicted RBP11.45□□□□□ -0.58
USHBP1-209ENST00000598570 GNB1LQ9BYB4 327 aa11.45□□□□□ -0.58
USHBP1-209ENST00000598570 KRTAP4-5Q9BYR2 181 aa11.45□□□□□ -0.58
USHBP1-209ENST00000598570 HLA-DQA1P01909 254 aa11.44□□□□□ -0.58
USHBP1-209ENST00000598570 ABCA13Q86UQ4 5058 aa11.44□□□□□ -0.58
USHBP1-209ENST00000598570 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.43□□□□□ -0.58
USHBP1-209ENST00000598570 GAGE12HA6NDE8 117 aa11.43□□□□□ -0.58
USHBP1-209ENST00000598570 K7EMI3 77 aa11.43□□□□□ -0.58
USHBP1-209ENST00000598570 MRPS36P82909 103 aaKnown RBP11.43□□□□□ -0.58
USHBP1-209ENST00000598570 C9orf163Q8N9P6 203 aa11.43□□□□□ -0.58
USHBP1-209ENST00000598570 TMEM18Q96B42 140 aa11.43□□□□□ -0.58
USHBP1-209ENST00000598570 PYGO1Q9Y3Y4 419 aa11.43□□□□□ -0.58
USHBP1-209ENST00000598570 SLPIP03973 132 aa11.42□□□□□ -0.58
USHBP1-209ENST00000598570 COX19Q49B96 90 aa11.42□□□□□ -0.58
USHBP1-209ENST00000598570 Q8N8P6 123 aa11.42□□□□□ -0.58
USHBP1-209ENST00000598570 C15orf56Q8N910 161 aa11.42□□□□□ -0.58
USHBP1-209ENST00000598570 SPANXA1Q9NS26 97 aa11.42□□□□□ -0.58
USHBP1-209ENST00000598570 S100PP25815 95 aa11.4□□□□□ -0.58
USHBP1-209ENST00000598570 RPL39P62891 51 aaKnown RBP11.4□□□□□ -0.58
USHBP1-209ENST00000598570 CFAP161Q6P656 301 aa11.4□□□□□ -0.58
USHBP1-209ENST00000598570 CD164L2Q6UWJ8 174 aa11.4□□□□□ -0.58
USHBP1-209ENST00000598570 MAP1LC3AQ9H492 121 aa11.4□□□□□ -0.58
USHBP1-209ENST00000598570 VPS13BQ7Z7G8 4022 aa11.39□□□□□ -0.59
USHBP1-209ENST00000598570 GVQW2A0A096LPI5 108 aaPredicted RBP11.39□□□□□ -0.59
USHBP1-209ENST00000598570 LINC01546A6NGU7 62 aa11.39□□□□□ -0.59
USHBP1-209ENST00000598570 C1orf196B1AJZ1 125 aa11.39□□□□□ -0.59
USHBP1-209ENST00000598570 SDIM1Q6ZPB5 146 aa11.39□□□□□ -0.59
USHBP1-209ENST00000598570 SRRM2Q9UQ35 2752 aaKnown RBP11.39□□□□□ -0.59
USHBP1-209ENST00000598570 RAB5AP20339 215 aa11.38□□□□□ -0.59
USHBP1-209ENST00000598570 SS18Q15532 418 aa11.38□□□□□ -0.59
USHBP1-209ENST00000598570 NXT2Q9NPJ8 142 aaKnown RBP11.38□□□□□ -0.59
USHBP1-209ENST00000598570 RPS10P5Q9NQ39 176 aa11.38□□□□□ -0.59
USHBP1-209ENST00000598570 MT-ND6P03923 174 aa11.37□□□□□ -0.59
USHBP1-209ENST00000598570 NPSP0C0P6 89 aa11.37□□□□□ -0.59
USHBP1-209ENST00000598570 LINC01620Q4KN68 170 aa11.37□□□□□ -0.59
USHBP1-209ENST00000598570 Q6ZUT4 128 aa11.37□□□□□ -0.59
USHBP1-209ENST00000598570 SVBPQ8N300 66 aa11.37□□□□□ -0.59
USHBP1-209ENST00000598570 IGKV3OR2-268A0A0C4DH90 116 aa11.36□□□□□ -0.59
USHBP1-209ENST00000598570 SNAPINO95295 136 aa11.36□□□□□ -0.59
USHBP1-209ENST00000598570 YPEL4Q96NS1 127 aa11.36□□□□□ -0.59
USHBP1-209ENST00000598570 ALKBH7Q9BT30 221 aaPredicted RBP11.36□□□□□ -0.59
USHBP1-209ENST00000598570 FAT1Q14517 4588 aa11.36□□□□□ -0.59
USHBP1-209ENST00000598570 hDV102S1A0JD36 115 aa11.35□□□□□ -0.59
USHBP1-209ENST00000598570 APOC3P02656 99 aa11.35□□□□□ -0.59
USHBP1-209ENST00000598570 XCL1P47992 114 aa11.35□□□□□ -0.59
USHBP1-209ENST00000598570 CIRBPQ14011 172 aaKnown RBP11.35□□□□□ -0.59
USHBP1-209ENST00000598570 CHAC1Q9BUX1 264 aa11.35□□□□□ -0.59
USHBP1-209ENST00000598570 LOC389332A0A1B0GUA5 103 aa11.34□□□□□ -0.59
USHBP1-209ENST00000598570 IGIPA6NJ69 53 aa11.34□□□□□ -0.59
USHBP1-209ENST00000598570 KIAA1644Q3SXP7 199 aa11.34□□□□□ -0.59
USHBP1-209ENST00000598570 ORMDL2Q53FV1 153 aa11.34□□□□□ -0.59
USHBP1-209ENST00000598570 OPRPNQ99935 248 aaPredicted RBP11.34□□□□□ -0.59
USHBP1-209ENST00000598570 IGHV1-58A0A0C4DH39 117 aa11.33□□□□□ -0.6
USHBP1-209ENST00000598570 IFI27P40305 119 aaPredicted RBP11.33□□□□□ -0.6
USHBP1-209ENST00000598570 NDUFA5Q16718 116 aa11.33□□□□□ -0.6
USHBP1-209ENST00000598570 IGLV4-3A0A075B6K6 122 aa11.32□□□□□ -0.6
USHBP1-209ENST00000598570 IGHV3OR16-9A0A0B4J2B5 98 aa11.32□□□□□ -0.6
USHBP1-209ENST00000598570 RNASE13Q5GAN3 156 aaKnown RBP11.31□□□□□ -0.6
USHBP1-209ENST00000598570 C2orf66Q6UXQ4 117 aa11.31□□□□□ -0.6
USHBP1-209ENST00000598570 AMELXQ99217 191 aa11.31□□□□□ -0.6
USHBP1-209ENST00000598570 AP5S1Q9NUS5 200 aa11.31□□□□□ -0.6
USHBP1-209ENST00000598570 CYSLTR1Q9Y271 337 aa11.31□□□□□ -0.6
USHBP1-209ENST00000598570 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.3□□□□□ -0.6
USHBP1-209ENST00000598570 TGIF2-C20orf24A0A0A6YYL0 155 aa11.3□□□□□ -0.6
USHBP1-209ENST00000598570 TRAV13-1A0A0B4J241 112 aa11.3□□□□□ -0.6
USHBP1-209ENST00000598570 G0S2P27469 103 aa11.3□□□□□ -0.6
USHBP1-209ENST00000598570 SCXQ7RTU7 201 aa11.3□□□□□ -0.6
USHBP1-209ENST00000598570 FAM19A3Q7Z5A8 133 aa11.3□□□□□ -0.6
USHBP1-209ENST00000598570 MRPL18Q9H0U6 180 aaKnown RBP11.3□□□□□ -0.6
USHBP1-209ENST00000598570 COX7A2LO14548 114 aa11.29□□□□□ -0.6
USHBP1-209ENST00000598570 CIRBP-AS1Q8TBR5 109 aa11.29□□□□□ -0.6
USHBP1-209ENST00000598570 TOMM6Q96B49 74 aa11.29□□□□□ -0.6
USHBP1-209ENST00000598570 TMEM141Q96I45 108 aa11.29□□□□□ -0.6
USHBP1-209ENST00000598570 IGHV3-64A0A075B6Q5 118 aa11.28□□□□□ -0.6
USHBP1-209ENST00000598570 EPM2AB3EWF7 344 aa11.28□□□□□ -0.6
USHBP1-209ENST00000598570 LINC00173Q6ZV60 143 aa11.28□□□□□ -0.6
USHBP1-209ENST00000598570 PANO1I0J062 215 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms