RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 MUC17Q685J3 4493 aa6.05□□□□□ -1.44
TRIM28-210ENST00000597618 A0A1B0GV50 99 aa6.05□□□□□ -1.44
TRIM28-210ENST00000597618 I3L3M4 83 aa6.05□□□□□ -1.44
TRIM28-210ENST00000597618 BCL2L11O43521 198 aa6.05□□□□□ -1.44
TRIM28-210ENST00000597618 RNF151Q2KHN1 245 aa6.05□□□□□ -1.44
TRIM28-210ENST00000597618 TEX261Q6UWH6 196 aa6.05□□□□□ -1.44
TRIM28-210ENST00000597618 C9orf62Q8N4C0 152 aa6.05□□□□□ -1.44
TRIM28-210ENST00000597618 KCNRGQ8N5I3 272 aa6.05□□□□□ -1.44
TRIM28-210ENST00000597618 MBD3L1Q8WWY6 194 aa6.05□□□□□ -1.44
TRIM28-210ENST00000597618 C11orf52Q96A22 123 aa6.05□□□□□ -1.44
TRIM28-210ENST00000597618 SMIM12Q96EX1 92 aa6.05□□□□□ -1.44
TRIM28-210ENST00000597618 MRAP2Q96G30 205 aa6.05□□□□□ -1.44
TRIM28-210ENST00000597618 CNFNQ9BYD5 112 aa6.05□□□□□ -1.44
TRIM28-210ENST00000597618 BATF3Q9NR55 127 aa6.05□□□□□ -1.44
TRIM28-210ENST00000597618 CDC42SE2Q9NRR3 84 aa6.05□□□□□ -1.44
TRIM28-210ENST00000597618 CARHSP1Q9Y2V2 147 aaKnown RBP6.05□□□□□ -1.44
TRIM28-210ENST00000597618 C1orf196B1AJZ1 125 aa6.04□□□□□ -1.44
TRIM28-210ENST00000597618 ESDP10768 282 aa6.04□□□□□ -1.44
TRIM28-210ENST00000597618 PMCHP20382 165 aa6.04□□□□□ -1.44
TRIM28-210ENST00000597618 MRPL52Q86TS9 123 aaKnown RBP6.04□□□□□ -1.44
TRIM28-210ENST00000597618 FAM213BQ8TBF2 198 aa6.04□□□□□ -1.44
TRIM28-210ENST00000597618 CYTL1Q9NRR1 136 aa6.04□□□□□ -1.44
TRIM28-210ENST00000597618 UMAD1C9J7I0 102 aa6.03□□□□□ -1.44
TRIM28-210ENST00000597618 GNG4P50150 75 aa6.03□□□□□ -1.44
TRIM28-210ENST00000597618 SMIM15Q7Z3B0 74 aa6.03□□□□□ -1.44
TRIM28-210ENST00000597618 KRTAP11-1Q8IUC1 163 aa6.03□□□□□ -1.44
TRIM28-210ENST00000597618 FAM210AQ96ND0 272 aa6.03□□□□□ -1.44
TRIM28-210ENST00000597618 OPRPNQ99935 248 aaPredicted RBP6.03□□□□□ -1.44
TRIM28-210ENST00000597618 BIN3Q9NQY0 253 aa6.03□□□□□ -1.44
TRIM28-210ENST00000597618 FAM168BA1KXE4 195 aa6.02□□□□□ -1.45
TRIM28-210ENST00000597618 G3V3Q6 166 aa6.02□□□□□ -1.45
TRIM28-210ENST00000597618 TSPAN13O95857 204 aa6.02□□□□□ -1.45
TRIM28-210ENST00000597618 TSHBP01222 138 aa6.02□□□□□ -1.45
TRIM28-210ENST00000597618 SPAG11BQ08648 103 aa6.02□□□□□ -1.45
TRIM28-210ENST00000597618 FAM19A5Q7Z5A7 132 aaPredicted RBP6.02□□□□□ -1.45
TRIM28-210ENST00000597618 IMMP2LQ96T52 175 aa6.02□□□□□ -1.45
TRIM28-210ENST00000597618 MANBALQ9NQG1 85 aa6.02□□□□□ -1.45
TRIM28-210ENST00000597618 TMEM242Q9NWH2 141 aa6.02□□□□□ -1.45
TRIM28-210ENST00000597618 TRBV6-5A0A0K0K1A5 114 aa6.01□□□□□ -1.45
TRIM28-210ENST00000597618 UBE2BP63146 152 aa6.01□□□□□ -1.45
TRIM28-210ENST00000597618 CCL20P78556 96 aa6.01□□□□□ -1.45
TRIM28-210ENST00000597618 OR10D4PQ8NGN7 298 aa6.01□□□□□ -1.45
TRIM28-210ENST00000597618 MRPL35Q9NZE8 188 aaKnown RBP6.01□□□□□ -1.45
TRIM28-210ENST00000597618 C7orf77A4D0Y5 90 aa6□□□□□ -1.45
TRIM28-210ENST00000597618 RAB19A4D1S5 217 aa6□□□□□ -1.45
TRIM28-210ENST00000597618 F8WDY8 70 aa6□□□□□ -1.45
TRIM28-210ENST00000597618 ARPC5O15511 151 aa6□□□□□ -1.45
TRIM28-210ENST00000597618 H2AFB1P0C5Y9 115 aa6□□□□□ -1.45
TRIM28-210ENST00000597618 ST20Q9HBF5 79 aa6□□□□□ -1.45
TRIM28-210ENST00000597618 GNG13Q9P2W3 67 aa6□□□□□ -1.45
TRIM28-210ENST00000597618 TRAV13-1A0A0B4J241 112 aa5.99□□□□□ -1.45
TRIM28-210ENST00000597618 M0QXV9 152 aa5.99□□□□□ -1.45
TRIM28-210ENST00000597618 TLX1NBP0CAT3 122 aa5.99□□□□□ -1.45
TRIM28-210ENST00000597618 FOXA3P55318 350 aaPredicted RBP5.99□□□□□ -1.45
TRIM28-210ENST00000597618 SMAGPQ0VAQ4 97 aa5.99□□□□□ -1.45
TRIM28-210ENST00000597618 C5orf38Q86SI9 138 aa5.99□□□□□ -1.45
TRIM28-210ENST00000597618 RPP21Q9H633 154 aaKnown RBP5.99□□□□□ -1.45
TRIM28-210ENST00000597618 TRBV20OR9-2A0A075B6H5 130 aa5.98□□□□□ -1.45
TRIM28-210ENST00000597618 NDUFA1O15239 70 aa5.98□□□□□ -1.45
TRIM28-210ENST00000597618 NUDT10Q8NFP7 164 aa5.98□□□□□ -1.45
TRIM28-210ENST00000597618 NUDT11Q96G61 164 aa5.98□□□□□ -1.45
TRIM28-210ENST00000597618 RNASE7Q9H1E1 156 aaKnown RBP5.98□□□□□ -1.45
TRIM28-210ENST00000597618 CSDC2Q9Y534 153 aaKnown RBP5.98□□□□□ -1.45
TRIM28-210ENST00000597618 TRBV27A0A0K0K1C4 114 aa5.97□□□□□ -1.45
TRIM28-210ENST00000597618 PDE6DO43924 150 aa5.97□□□□□ -1.45
TRIM28-210ENST00000597618 ZNF861PO60384 105 aa5.97□□□□□ -1.45
TRIM28-210ENST00000597618 TMEM241Q24JQ0 296 aa5.97□□□□□ -1.45
TRIM28-210ENST00000597618 GAGE2EQ4V326 116 aa5.97□□□□□ -1.45
TRIM28-210ENST00000597618 RNASE13Q5GAN3 156 aaKnown RBP5.97□□□□□ -1.45
TRIM28-210ENST00000597618 LCE2DQ5TA82 110 aaPredicted RBP5.97□□□□□ -1.45
TRIM28-210ENST00000597618 ORAOV1Q8WV07 137 aa5.97□□□□□ -1.45
TRIM28-210ENST00000597618 CDIP1Q9H305 208 aa5.97□□□□□ -1.45
TRIM28-210ENST00000597618 SMDT1Q9H4I9 107 aa5.97□□□□□ -1.45
TRIM28-210ENST00000597618 GAGE2DQ9UEU5 116 aa5.97□□□□□ -1.45
TRIM28-210ENST00000597618 CRCT1Q9UGL9 99 aa5.97□□□□□ -1.45
TRIM28-210ENST00000597618 FCER1GP30273 86 aa5.96□□□□□ -1.46
TRIM28-210ENST00000597618 POLR2KP53803 58 aaKnown RBP5.96□□□□□ -1.46
TRIM28-210ENST00000597618 KRTAP7-1Q8IUC3 87 aa5.96□□□□□ -1.46
TRIM28-210ENST00000597618 MED9Q9NWA0 146 aa5.96□□□□□ -1.46
TRIM28-210ENST00000597618 UBE2D4Q9Y2X8 147 aa5.96□□□□□ -1.46
TRIM28-210ENST00000597618 ZNF345Q14585 488 aa5.95□□□□□ -1.46
TRIM28-210ENST00000597618 TPRXLQ17RH7 258 aa5.95□□□□□ -1.46
TRIM28-210ENST00000597618 C10orf25Q5T742 122 aa5.95□□□□□ -1.46
TRIM28-210ENST00000597618 TYMSOSQ8TAI1 123 aa5.95□□□□□ -1.46
TRIM28-210ENST00000597618 C6orf48Q9UBA6 75 aa5.95□□□□□ -1.46
TRIM28-210ENST00000597618 A0A087X002 238 aa5.94□□□□□ -1.46
TRIM28-210ENST00000597618 NUPR1O60356 82 aa5.94□□□□□ -1.46
TRIM28-210ENST00000597618 CRYGAP11844 174 aa5.94□□□□□ -1.46
TRIM28-210ENST00000597618 UNQ6190/PRO20217Q6UXQ8 127 aa5.94□□□□□ -1.46
TRIM28-210ENST00000597618 Q6ZUT4 128 aa5.94□□□□□ -1.46
TRIM28-210ENST00000597618 TEX46H3BTG2 121 aa5.93□□□□□ -1.46
TRIM28-210ENST00000597618 VCYO14598 125 aa5.93□□□□□ -1.46
TRIM28-210ENST00000597618 BORCS7Q96B45 105 aa5.93□□□□□ -1.46
TRIM28-210ENST00000597618 RETNLBQ9BQ08 111 aa5.93□□□□□ -1.46
TRIM28-210ENST00000597618 TIMM21Q9BVV7 248 aa5.93□□□□□ -1.46
TRIM28-210ENST00000597618 IGHV3OR16-9A0A0B4J2B5 98 aa5.92□□□□□ -1.46
TRIM28-210ENST00000597618 KANTRA0A1W2PQU2 76 aa5.92□□□□□ -1.46
TRIM28-210ENST00000597618 NDUFC2-KCTD14E9PQ53 114 aa5.92□□□□□ -1.46
TRIM28-210ENST00000597618 K7EN84 100 aa5.92□□□□□ -1.46
TRIM28-210ENST00000597618 TMEM18Q96B42 140 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms