RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 FLG2Q5D862 2391 aaPredicted RBP8.19□□□□□ -1.1
UPF1-203ENST00000594504 IGLV4-60A0A075B6I1 120 aa8.18□□□□□ -1.1
UPF1-203ENST00000594504 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.18□□□□□ -1.1
UPF1-203ENST00000594504 IGKV2-29A2NJV5 120 aaPredicted RBP8.18□□□□□ -1.1
UPF1-203ENST00000594504 NPYP01303 97 aa8.18□□□□□ -1.1
UPF1-203ENST00000594504 APOC3P02656 99 aa8.18□□□□□ -1.1
UPF1-203ENST00000594504 ESDP10768 282 aa8.18□□□□□ -1.1
UPF1-203ENST00000594504 FCER1GP30273 86 aa8.18□□□□□ -1.1
UPF1-203ENST00000594504 AMMECR1LQ6DCA0 310 aa8.18□□□□□ -1.1
UPF1-203ENST00000594504 TMEM136Q6ZRR5 245 aa8.18□□□□□ -1.1
UPF1-203ENST00000594504 C20orf203Q8NBC4 194 aa8.18□□□□□ -1.1
UPF1-203ENST00000594504 C1orf43Q9BWL3 253 aa8.18□□□□□ -1.1
UPF1-203ENST00000594504 MYCBP2O75592 4640 aa8.17□□□□□ -1.1
UPF1-203ENST00000594504 TCAPO15273 167 aa8.17□□□□□ -1.1
UPF1-203ENST00000594504 PLA2G1BP04054 148 aaKnown RBP8.17□□□□□ -1.1
UPF1-203ENST00000594504 ZNF25P17030 456 aaPredicted RBP8.17□□□□□ -1.1
UPF1-203ENST00000594504 REG3AQ06141 175 aa8.17□□□□□ -1.1
UPF1-203ENST00000594504 CLPSL2Q6UWE3 100 aa8.17□□□□□ -1.1
UPF1-203ENST00000594504 SVBPQ8N300 66 aa8.17□□□□□ -1.1
UPF1-203ENST00000594504 PRELID3AQ96N28 172 aa8.17□□□□□ -1.1
UPF1-203ENST00000594504 SMIM2Q9BVW6 85 aa8.17□□□□□ -1.1
UPF1-203ENST00000594504 LAMTOR2Q9Y2Q5 125 aa8.17□□□□□ -1.1
UPF1-203ENST00000594504 SNAPINO95295 136 aa8.16□□□□□ -1.1
UPF1-203ENST00000594504 FGF6P10767 208 aa8.16□□□□□ -1.1
UPF1-203ENST00000594504 RNASEKQ6P5S7 137 aaKnown RBP8.16□□□□□ -1.1
UPF1-203ENST00000594504 SCXQ7RTU7 201 aa8.16□□□□□ -1.1
UPF1-203ENST00000594504 HLA-DQA1P01909 254 aa8.15□□□□□ -1.1
UPF1-203ENST00000594504 MRPL52Q86TS9 123 aaKnown RBP8.15□□□□□ -1.1
UPF1-203ENST00000594504 TMEM101Q96IK0 257 aa8.15□□□□□ -1.1
UPF1-203ENST00000594504 TRAV8-4A0A0B4J246 113 aa8.14□□□□□ -1.11
UPF1-203ENST00000594504 PRSS47A8MTI9 375 aa8.14□□□□□ -1.11
UPF1-203ENST00000594504 KRTAP29-1A8MX34 341 aaPredicted RBP8.14□□□□□ -1.11
UPF1-203ENST00000594504 SMAGPQ0VAQ4 97 aa8.14□□□□□ -1.11
UPF1-203ENST00000594504 COX19Q49B96 90 aa8.14□□□□□ -1.11
UPF1-203ENST00000594504 GNB1LQ9BYB4 327 aa8.14□□□□□ -1.11
UPF1-203ENST00000594504 KRTAP10-4P60372 401 aaPredicted RBP8.13□□□□□ -1.11
UPF1-203ENST00000594504 OR5A1Q8NGJ0 315 aa8.13□□□□□ -1.11
UPF1-203ENST00000594504 TMEM18Q96B42 140 aa8.13□□□□□ -1.11
UPF1-203ENST00000594504 MAP1LC3AQ9H492 121 aa8.13□□□□□ -1.11
UPF1-203ENST00000594504 MT-ND6P03923 174 aa8.12□□□□□ -1.11
UPF1-203ENST00000594504 RAB5AP20339 215 aa8.12□□□□□ -1.11
UPF1-203ENST00000594504 KRTAP26-1Q6PEX3 210 aa8.12□□□□□ -1.11
UPF1-203ENST00000594504 CIRBP-AS1Q8TBR5 109 aa8.12□□□□□ -1.11
UPF1-203ENST00000594504 CSDC2Q9Y534 153 aaKnown RBP8.12□□□□□ -1.11
UPF1-203ENST00000594504 IGLV10-54A0A075B6I4 117 aa8.11□□□□□ -1.11
UPF1-203ENST00000594504 DGAT2L7PQ6IED9 249 aa8.11□□□□□ -1.11
UPF1-203ENST00000594504 SLC7A5P1Q8MH63 180 aa8.11□□□□□ -1.11
UPF1-203ENST00000594504 CHAC1Q9BUX1 264 aa8.11□□□□□ -1.11
UPF1-203ENST00000594504 TIMM21Q9BVV7 248 aa8.11□□□□□ -1.11
UPF1-203ENST00000594504 UBE2D4Q9Y2X8 147 aa8.11□□□□□ -1.11
UPF1-203ENST00000594504 IGKV3OR2-268A0A0C4DH90 116 aa8.1□□□□□ -1.11
UPF1-203ENST00000594504 LOC389332A0A1B0GUA5 103 aa8.1□□□□□ -1.11
UPF1-203ENST00000594504 C14orf177Q52M58 125 aa8.1□□□□□ -1.11
UPF1-203ENST00000594504 ZNF664Q8N3J9 261 aa8.1□□□□□ -1.11
UPF1-203ENST00000594504 Q8N8P6 123 aa8.1□□□□□ -1.11
UPF1-203ENST00000594504 CDC42SE2Q9NRR3 84 aa8.1□□□□□ -1.11
UPF1-203ENST00000594504 TGIF2-C20orf24A0A0A6YYL0 155 aa8.09□□□□□ -1.11
UPF1-203ENST00000594504 KIAA1644Q3SXP7 199 aa8.09□□□□□ -1.11
UPF1-203ENST00000594504 NXT2Q9NPJ8 142 aaKnown RBP8.09□□□□□ -1.11
UPF1-203ENST00000594504 DMBT1Q9UGM3 2413 aaPredicted RBP8.09□□□□□ -1.11
UPF1-203ENST00000594504 USP17L23D6RBM5 183 aa8.08□□□□□ -1.12
UPF1-203ENST00000594504 K7EMI3 77 aa8.08□□□□□ -1.12
UPF1-203ENST00000594504 RPL39P62891 51 aaKnown RBP8.08□□□□□ -1.12
UPF1-203ENST00000594504 CHCHD10Q8WYQ3 142 aaPredicted RBP8.08□□□□□ -1.12
UPF1-203ENST00000594504 MRPL18Q9H0U6 180 aaKnown RBP8.08□□□□□ -1.12
UPF1-203ENST00000594504 SPANXA1Q9NS26 97 aa8.08□□□□□ -1.12
UPF1-203ENST00000594504 LINC00959A0A1B0GUT2 108 aa8.07□□□□□ -1.12
UPF1-203ENST00000594504 GAGE12HA6NDE8 117 aa8.07□□□□□ -1.12
UPF1-203ENST00000594504 FABP9Q0Z7S8 132 aa8.07□□□□□ -1.12
UPF1-203ENST00000594504 ORMDL2Q53FV1 153 aa8.07□□□□□ -1.12
UPF1-203ENST00000594504 ALKBH7Q9BT30 221 aaPredicted RBP8.07□□□□□ -1.12
UPF1-203ENST00000594504 SRRM2Q9UQ35 2752 aaKnown RBP8.06□□□□□ -1.12
UPF1-203ENST00000594504 SS18Q15532 418 aa8.06□□□□□ -1.12
UPF1-203ENST00000594504 Q6ZUT4 128 aa8.06□□□□□ -1.12
UPF1-203ENST00000594504 CCL25O15444 150 aa8.05□□□□□ -1.12
UPF1-203ENST00000594504 PRSS1P07477 247 aa8.05□□□□□ -1.12
UPF1-203ENST00000594504 IFI27P40305 119 aaPredicted RBP8.05□□□□□ -1.12
UPF1-203ENST00000594504 MRPS36P82909 103 aaKnown RBP8.05□□□□□ -1.12
UPF1-203ENST00000594504 YPEL4Q96NS1 127 aa8.05□□□□□ -1.12
UPF1-203ENST00000594504 CYSLTR1Q9Y271 337 aa8.05□□□□□ -1.12
UPF1-203ENST00000594504 PYGO1Q9Y3Y4 419 aa8.05□□□□□ -1.12
UPF1-203ENST00000594504 TRAPPC1Q9Y5R8 145 aa8.05□□□□□ -1.12
UPF1-203ENST00000594504 C1orf196B1AJZ1 125 aa8.04□□□□□ -1.12
UPF1-203ENST00000594504 XCL1P47992 114 aa8.04□□□□□ -1.12
UPF1-203ENST00000594504 HNRNPA3P51991 378 aaKnown RBP8.04□□□□□ -1.12
UPF1-203ENST00000594504 FOXI1Q12951 378 aa8.04□□□□□ -1.12
UPF1-203ENST00000594504 RNASE13Q5GAN3 156 aaKnown RBP8.04□□□□□ -1.12
UPF1-203ENST00000594504 PRSS3P2Q8NHM4 247 aa8.04□□□□□ -1.12
UPF1-203ENST00000594504 SMCO4Q9NRQ5 59 aa8.04□□□□□ -1.12
UPF1-203ENST00000594504 TRAV13-1A0A0B4J241 112 aa8.03□□□□□ -1.12
UPF1-203ENST00000594504 PANO1I0J062 215 aa8.03□□□□□ -1.12
UPF1-203ENST00000594504 G0S2P27469 103 aa8.03□□□□□ -1.12
UPF1-203ENST00000594504 CFAP161Q6P656 301 aa8.03□□□□□ -1.12
UPF1-203ENST00000594504 CD164L2Q6UWJ8 174 aa8.03□□□□□ -1.12
UPF1-203ENST00000594504 C2orf66Q6UXQ4 117 aa8.03□□□□□ -1.12
UPF1-203ENST00000594504 CBLN2Q8IUK8 224 aa8.03□□□□□ -1.12
UPF1-203ENST00000594504 FAM104AQ969W3 186 aa8.03□□□□□ -1.12
UPF1-203ENST00000594504 OXTP01178 125 aa8.02□□□□□ -1.13
UPF1-203ENST00000594504 RPL37AP61513 92 aaKnown RBP8.02□□□□□ -1.13
UPF1-203ENST00000594504 SERTAD4-AS1Q5TG53 156 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms