RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 MYH11P35749 1972 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 FREM1Q5H8C1 2179 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 DOCK10Q96BY6 2186 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 SPTBP11277 2137 aa1.66□□□□□ -2.14
VPS4B-203ENST00000588323 UBR4Q5T4S7 5183 aa1.65□□□□□ -2.14
VPS4B-203ENST00000588323 MPDZO75970 2070 aa1.65□□□□□ -2.14
VPS4B-203ENST00000588323 DSCAML1Q8TD84 2053 aa1.65□□□□□ -2.14
VPS4B-203ENST00000588323 DNAJC13O75165 2243 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 IGHV3-73A0A0B4J1V6 119 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 A0A1B0GU33 70 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 A0A1B0GW54 56 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 IGLC7A0M8Q6 106 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 GRIFINA4D1Z8 144 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 C19orf71A6NCJ1 209 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 TMEM235A6NFC5 223 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 DEFB108AA8MXU0 73 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 OOSP1A8MZH6 123 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 LY6LH3BQJ8 138 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 H3BRM9 83 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 M0R2P5 195 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 PITX3O75364 302 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 UBL3O95164 117 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 SFT2D2O95562 160 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 CFDP00746 253 aaPredicted RBP1.65□□□□□ -2.15
VPS4B-203ENST00000588323 TRGC1P0CF51 173 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 CRYGAP11844 174 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 RPL27AP46776 148 aaKnown RBP1.65□□□□□ -2.15
VPS4B-203ENST00000588323 CCL20P78556 96 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 KRTAP25-1Q3LHN0 102 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 TDRG1Q3Y452 100 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 ZNF322Q6U7Q0 402 aaPredicted RBP1.65□□□□□ -2.15
VPS4B-203ENST00000588323 DPPA3Q6W0C5 159 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 SLC25A26Q70HW3 274 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 SPATA12Q7Z6I5 190 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 LYPD6Q86Y78 171 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 OR10AG1Q8NH19 301 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 ATP6V0E2Q8NHE4 81 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 MGST2Q99735 147 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 PMCHL2Q9BQD1 86 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 BCL2L10Q9HD36 194 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 IL36BQ9NZH7 164 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 SPCS1Q9Y6A9 102 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 LINC00312Q9Y6C7 94 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 R4GN34 69 aa1.65□□□□□ -2.15
VPS4B-203ENST00000588323 KANTRA0A1W2PQU2 76 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 A6NIN4 97 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 C17orf51A8MQB3 221 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 K7ERJ3 54 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 SDCBPO00560 298 aaPredicted RBP1.64□□□□□ -2.15
VPS4B-203ENST00000588323 SSSCA1O60232 199 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 OR1I1O60431 355 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 HYPMO75409 117 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 SIX6O95475 246 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 CPSF4O95639 269 aaKnown RBP1.64□□□□□ -2.15
VPS4B-203ENST00000588323 IGHV1-69P01742 117 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 IL5P05113 134 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 GYPBP06028 91 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 SLC25A6P12236 298 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 ZNF22P17026 224 aaPredicted RBP1.64□□□□□ -2.15
VPS4B-203ENST00000588323 NFYAP23511 347 aaPredicted RBP1.64□□□□□ -2.15
VPS4B-203ENST00000588323 CKS2P33552 79 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 FUSP35637 526 aaKnown RBP eCLIP1.64□□□□□ -2.15
VPS4B-203ENST00000588323 POLR2JP52435 117 aaKnown RBP1.64□□□□□ -2.15
VPS4B-203ENST00000588323 BLCAPP62952 87 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 RPL18Q07020 188 aaKnown RBP1.64□□□□□ -2.15
VPS4B-203ENST00000588323 LY6EQ16553 131 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 FAM229BQ4G0N7 80 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 TMEM155Q4W5P6 130 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 SPATA45Q537H7 98 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 HEPN1Q6WQI6 88 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 CNEP1R1Q8N9A8 125 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 MORN4Q8NDC4 146 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 OR2T35Q8NGX2 323 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 C10orf105Q8TEF2 133 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 POP5Q969H6 163 aaKnown RBP1.64□□□□□ -2.15
VPS4B-203ENST00000588323 SPTSSAQ969W0 71 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 OR8B2Q96RD0 313 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 C16orf95Q9H693 158 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 LSM2Q9Y333 95 aaKnown RBP1.64□□□□□ -2.15
VPS4B-203ENST00000588323 DNAJC15Q9Y5T4 150 aa1.64□□□□□ -2.15
VPS4B-203ENST00000588323 TRGV5A0A0B4J1U4 118 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 C7orf77A4D0Y5 90 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 C17orf98A8MV24 154 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 BUB1B-PAK6H3BSN5 160 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 PIN1P1O15428 100 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 IGLC2P0DOY2 106 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 IGLC3P0DOY3 106 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 PIPP12273 146 aaPredicted RBP1.63□□□□□ -2.15
VPS4B-203ENST00000588323 COX7CP15954 63 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 SPINT3P49223 89 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 FXYD7P58549 80 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 KRTDAPP60985 99 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 HIST1H4AP62805 103 aaKnown RBP1.63□□□□□ -2.15
VPS4B-203ENST00000588323 UBE2L3P68036 154 aaKnown RBP1.63□□□□□ -2.15
VPS4B-203ENST00000588323 ZNF117Q03924 483 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 Q0VG73 95 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 PMCHL1Q16048 86 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 KRTAP13-2Q52LG2 175 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 LINC01554Q52M75 96 aa1.63□□□□□ -2.15
VPS4B-203ENST00000588323 MIC13Q5XKP0 118 aa1.63□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms