RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 KRTAP1-4P0C5Y4 121 aa7.65□□□□□ -1.18
SS18-219ENST00000581570 UBE2D1P51668 147 aa7.65□□□□□ -1.18
SS18-219ENST00000581570 MEF2BQ02080 365 aaPredicted RBP7.65□□□□□ -1.18
SS18-219ENST00000581570 MBD3L1Q8WWY6 194 aa7.65□□□□□ -1.18
SS18-219ENST00000581570 RPL39LQ96EH5 51 aaKnown RBP7.65□□□□□ -1.18
SS18-219ENST00000581570 CAMK2N2Q96S95 79 aa7.65□□□□□ -1.18
SS18-219ENST00000581570 C19orf71A6NCJ1 209 aa7.64□□□□□ -1.19
SS18-219ENST00000581570 GIPP09681 153 aaPredicted RBP7.64□□□□□ -1.19
SS18-219ENST00000581570 MALP21145 153 aa7.64□□□□□ -1.19
SS18-219ENST00000581570 TWIST1Q15672 202 aa7.64□□□□□ -1.19
SS18-219ENST00000581570 EIF5AL1Q6IS14 154 aaKnown RBP7.64□□□□□ -1.19
SS18-219ENST00000581570 KCNRGQ8N5I3 272 aa7.64□□□□□ -1.19
SS18-219ENST00000581570 CYTL1Q9NRR1 136 aa7.64□□□□□ -1.19
SS18-219ENST00000581570 SDHAF1A6NFY7 115 aa7.63□□□□□ -1.19
SS18-219ENST00000581570 PMCHP20382 165 aa7.63□□□□□ -1.19
SS18-219ENST00000581570 RPL13AP40429 203 aaKnown RBP7.63□□□□□ -1.19
SS18-219ENST00000581570 CENPWQ5EE01 88 aa7.63□□□□□ -1.19
SS18-219ENST00000581570 C9orf62Q8N4C0 152 aa7.63□□□□□ -1.19
SS18-219ENST00000581570 FAM213BQ8TBF2 198 aa7.63□□□□□ -1.19
SS18-219ENST00000581570 TSKUQ8WUA8 353 aa7.63□□□□□ -1.19
SS18-219ENST00000581570 COX7A2LO14548 114 aa7.62□□□□□ -1.19
SS18-219ENST00000581570 BCL2L11O43521 198 aa7.62□□□□□ -1.19
SS18-219ENST00000581570 KRTAP11-1Q8IUC1 163 aa7.62□□□□□ -1.19
SS18-219ENST00000581570 C2orf48Q96LS8 159 aa7.62□□□□□ -1.19
SS18-219ENST00000581570 OPRPNQ99935 248 aaPredicted RBP7.62□□□□□ -1.19
SS18-219ENST00000581570 CDC42SE2Q9NRR3 84 aa7.62□□□□□ -1.19
SS18-219ENST00000581570 I3L3M4 83 aa7.61□□□□□ -1.19
SS18-219ENST00000581570 ESDP10768 282 aa7.61□□□□□ -1.19
SS18-219ENST00000581570 C11orf52Q96A22 123 aa7.61□□□□□ -1.19
SS18-219ENST00000581570 RAB19A4D1S5 217 aa7.6□□□□□ -1.19
SS18-219ENST00000581570 TSPAN13O95857 204 aa7.6□□□□□ -1.19
SS18-219ENST00000581570 CTRLP40313 264 aa7.6□□□□□ -1.19
SS18-219ENST00000581570 RNF151Q2KHN1 245 aa7.6□□□□□ -1.19
SS18-219ENST00000581570 TEX261Q6UWH6 196 aa7.6□□□□□ -1.19
SS18-219ENST00000581570 MRAP2Q96G30 205 aa7.6□□□□□ -1.19
SS18-219ENST00000581570 C1orf196B1AJZ1 125 aa7.59□□□□□ -1.19
SS18-219ENST00000581570 UMAD1C9J7I0 102 aa7.59□□□□□ -1.19
SS18-219ENST00000581570 SMIM15Q7Z3B0 74 aa7.59□□□□□ -1.19
SS18-219ENST00000581570 MRPL52Q86TS9 123 aaKnown RBP7.59□□□□□ -1.19
SS18-219ENST00000581570 SMIM12Q96EX1 92 aa7.59□□□□□ -1.19
SS18-219ENST00000581570 CNFNQ9BYD5 112 aa7.59□□□□□ -1.19
SS18-219ENST00000581570 CARHSP1Q9Y2V2 147 aaKnown RBP7.59□□□□□ -1.19
SS18-219ENST00000581570 FAM168BA1KXE4 195 aa7.58□□□□□ -1.2
SS18-219ENST00000581570 ARPC5O15511 151 aa7.58□□□□□ -1.2
SS18-219ENST00000581570 TSHBP01222 138 aa7.58□□□□□ -1.2
SS18-219ENST00000581570 GNG4P50150 75 aa7.58□□□□□ -1.2
SS18-219ENST00000581570 FOXA3P55318 350 aaPredicted RBP7.58□□□□□ -1.2
SS18-219ENST00000581570 CCL20P78556 96 aa7.58□□□□□ -1.2
SS18-219ENST00000581570 C5orf38Q86SI9 138 aa7.58□□□□□ -1.2
SS18-219ENST00000581570 BIN3Q9NQY0 253 aa7.58□□□□□ -1.2
SS18-219ENST00000581570 TMEM242Q9NWH2 141 aa7.58□□□□□ -1.2
SS18-219ENST00000581570 TRBV6-5A0A0K0K1A5 114 aa7.57□□□□□ -1.2
SS18-219ENST00000581570 G3V3Q6 166 aa7.57□□□□□ -1.2
SS18-219ENST00000581570 SPAG11BQ08648 103 aa7.57□□□□□ -1.2
SS18-219ENST00000581570 FAM19A5Q7Z5A7 132 aaPredicted RBP7.57□□□□□ -1.2
SS18-219ENST00000581570 NUDT10Q8NFP7 164 aa7.57□□□□□ -1.2
SS18-219ENST00000581570 NUDT11Q96G61 164 aa7.57□□□□□ -1.2
SS18-219ENST00000581570 GNG13Q9P2W3 67 aa7.57□□□□□ -1.2
SS18-219ENST00000581570 FAM210AQ96ND0 272 aa7.56□□□□□ -1.2
SS18-219ENST00000581570 IMMP2LQ96T52 175 aa7.56□□□□□ -1.2
SS18-219ENST00000581570 MANBALQ9NQG1 85 aa7.56□□□□□ -1.2
SS18-219ENST00000581570 TRAV13-1A0A0B4J241 112 aa7.55□□□□□ -1.2
SS18-219ENST00000581570 UBE2BP63146 152 aa7.55□□□□□ -1.2
SS18-219ENST00000581570 ST20Q9HBF5 79 aa7.55□□□□□ -1.2
SS18-219ENST00000581570 MRPL35Q9NZE8 188 aaKnown RBP7.55□□□□□ -1.2
SS18-219ENST00000581570 C7orf77A4D0Y5 90 aa7.54□□□□□ -1.2
SS18-219ENST00000581570 RPP21Q9H633 154 aaKnown RBP7.54□□□□□ -1.2
SS18-219ENST00000581570 MUC17Q685J3 4493 aa7.53□□□□□ -1.2
SS18-219ENST00000581570 TRBV20OR9-2A0A075B6H5 130 aa7.53□□□□□ -1.2
SS18-219ENST00000581570 F8WDY8 70 aa7.53□□□□□ -1.2
SS18-219ENST00000581570 GAGE2EQ4V326 116 aa7.53□□□□□ -1.2
SS18-219ENST00000581570 RNASE13Q5GAN3 156 aaKnown RBP7.53□□□□□ -1.2
SS18-219ENST00000581570 OR10D4PQ8NGN7 298 aa7.53□□□□□ -1.2
SS18-219ENST00000581570 RNASE7Q9H1E1 156 aaKnown RBP7.53□□□□□ -1.2
SS18-219ENST00000581570 MED9Q9NWA0 146 aa7.53□□□□□ -1.2
SS18-219ENST00000581570 GAGE2DQ9UEU5 116 aa7.53□□□□□ -1.2
SS18-219ENST00000581570 M0QXV9 152 aa7.52□□□□□ -1.21
SS18-219ENST00000581570 TLX1NBP0CAT3 122 aa7.52□□□□□ -1.21
SS18-219ENST00000581570 POLR2KP53803 58 aaKnown RBP7.52□□□□□ -1.21
SS18-219ENST00000581570 KRTAP7-1Q8IUC3 87 aa7.52□□□□□ -1.21
SS18-219ENST00000581570 CSDC2Q9Y534 153 aaKnown RBP7.52□□□□□ -1.21
SS18-219ENST00000581570 TRBV27A0A0K0K1C4 114 aa7.51□□□□□ -1.21
SS18-219ENST00000581570 H3BS24 57 aa7.51□□□□□ -1.21
SS18-219ENST00000581570 NDUFA1O15239 70 aa7.51□□□□□ -1.21
SS18-219ENST00000581570 PDE6DO43924 150 aa7.51□□□□□ -1.21
SS18-219ENST00000581570 ZNF861PO60384 105 aa7.51□□□□□ -1.21
SS18-219ENST00000581570 SMAGPQ0VAQ4 97 aa7.51□□□□□ -1.21
SS18-219ENST00000581570 TMEM241Q24JQ0 296 aa7.51□□□□□ -1.21
SS18-219ENST00000581570 C10orf25Q5T742 122 aa7.51□□□□□ -1.21
SS18-219ENST00000581570 ORAOV1Q8WV07 137 aa7.51□□□□□ -1.21
SS18-219ENST00000581570 UNQ6190/PRO20217Q6UXQ8 127 aa7.5□□□□□ -1.21
SS18-219ENST00000581570 UBE2D4Q9Y2X8 147 aa7.5□□□□□ -1.21
SS18-219ENST00000581570 FCER1GP30273 86 aa7.49□□□□□ -1.21
SS18-219ENST00000581570 CDIP1Q9H305 208 aa7.49□□□□□ -1.21
SS18-219ENST00000581570 SMDT1Q9H4I9 107 aa7.49□□□□□ -1.21
SS18-219ENST00000581570 C6orf48Q9UBA6 75 aa7.49□□□□□ -1.21
SS18-219ENST00000581570 SMLR1H3BR10 107 aa7.48□□□□□ -1.21
SS18-219ENST00000581570 VCYO14598 125 aa7.48□□□□□ -1.21
SS18-219ENST00000581570 ZNF345Q14585 488 aa7.48□□□□□ -1.21
SS18-219ENST00000581570 Q6ZUT4 128 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms