RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 C11orf72Q8NBR9 251 aa9.12□□□□□ -0.95
CDK5RAP3-217ENST00000580287 Q9UF83 564 aa9.12□□□□□ -0.95
CDK5RAP3-217ENST00000580287 CSDC2Q9Y534 153 aaKnown RBP9.12□□□□□ -0.95
CDK5RAP3-217ENST00000580287 M0R2P5 195 aa9.12□□□□□ -0.95
CDK5RAP3-217ENST00000580287 MRPL16Q9NX20 251 aaKnown RBP9.12□□□□□ -0.95
CDK5RAP3-217ENST00000580287 APOMO95445 188 aa9.11□□□□□ -0.95
CDK5RAP3-217ENST00000580287 RPL32P62910 135 aaKnown RBP9.11□□□□□ -0.95
CDK5RAP3-217ENST00000580287 TRBV6-5A0A0K0K1A5 114 aa9.11□□□□□ -0.95
CDK5RAP3-217ENST00000580287 OR11H2Q8NH07 326 aa9.11□□□□□ -0.95
CDK5RAP3-217ENST00000580287 PLEKHB2Q96CS7 222 aa9.11□□□□□ -0.95
CDK5RAP3-217ENST00000580287 PRADC1Q9BSG0 188 aa9.11□□□□□ -0.95
CDK5RAP3-217ENST00000580287 C11orf86A6NJI1 115 aa9.1□□□□□ -0.95
CDK5RAP3-217ENST00000580287 SMCPP49901 116 aaPredicted RBP9.1□□□□□ -0.95
CDK5RAP3-217ENST00000580287 DEFB135Q30KP9 77 aa9.1□□□□□ -0.95
CDK5RAP3-217ENST00000580287 C1QTNF4Q9BXJ3 329 aa9.1□□□□□ -0.95
CDK5RAP3-217ENST00000580287 FOXI1Q12951 378 aa9.09□□□□□ -0.95
CDK5RAP3-217ENST00000580287 IGIPA6NJ69 53 aa9.09□□□□□ -0.95
CDK5RAP3-217ENST00000580287 A8MWV9 139 aa9.09□□□□□ -0.95
CDK5RAP3-217ENST00000580287 I3L3M4 83 aa9.09□□□□□ -0.95
CDK5RAP3-217ENST00000580287 DEFB4AO15263 64 aa9.09□□□□□ -0.95
CDK5RAP3-217ENST00000580287 CFAP126Q5VTH2 177 aa9.09□□□□□ -0.95
CDK5RAP3-217ENST00000580287 IGHV3-64A0A075B6Q5 118 aa9.08□□□□□ -0.96
CDK5RAP3-217ENST00000580287 RS1O15537 224 aa9.08□□□□□ -0.96
CDK5RAP3-217ENST00000580287 PMVKQ15126 192 aa9.08□□□□□ -0.96
CDK5RAP3-217ENST00000580287 NOP10Q9NPE3 64 aaKnown RBP9.08□□□□□ -0.96
CDK5RAP3-217ENST00000580287 IGLV4-69A0A075B6H9 119 aa9.08□□□□□ -0.96
CDK5RAP3-217ENST00000580287 TRAV26-1A0A087WT03 109 aa9.08□□□□□ -0.96
CDK5RAP3-217ENST00000580287 NFE4Q86UQ8 179 aa9.08□□□□□ -0.96
CDK5RAP3-217ENST00000580287 DNHD1Q96M86 4753 aa9.07□□□□□ -0.96
CDK5RAP3-217ENST00000580287 ZNF815PA8K554 130 aa9.07□□□□□ -0.96
CDK5RAP3-217ENST00000580287 ATP6V0E2Q8NHE4 81 aa9.07□□□□□ -0.96
CDK5RAP3-217ENST00000580287 TMEM141Q96I45 108 aa9.07□□□□□ -0.96
CDK5RAP3-217ENST00000580287 TRGV1A0A0A0MS02 117 aa9.07□□□□□ -0.96
CDK5RAP3-217ENST00000580287 PLAC8L1A1L4L8 177 aa9.07□□□□□ -0.96
CDK5RAP3-217ENST00000580287 LINC01549A6NIU2 74 aa9.07□□□□□ -0.96
CDK5RAP3-217ENST00000580287 TSPEAR-AS2P59090 65 aa9.07□□□□□ -0.96
CDK5RAP3-217ENST00000580287 EGFEM1PQ0D2K5 195 aa9.07□□□□□ -0.96
CDK5RAP3-217ENST00000580287 TMEM170BQ5T4T1 132 aa9.07□□□□□ -0.96
CDK5RAP3-217ENST00000580287 SCGB1D4Q6XE38 83 aa9.07□□□□□ -0.96
CDK5RAP3-217ENST00000580287 Q6ZSN1 163 aa9.07□□□□□ -0.96
CDK5RAP3-217ENST00000580287 Q6ZTI0 123 aa9.07□□□□□ -0.96
CDK5RAP3-217ENST00000580287 ZNRF2Q8NHG8 242 aa9.07□□□□□ -0.96
CDK5RAP3-217ENST00000580287 RNASE13Q5GAN3 156 aaKnown RBP9.06□□□□□ -0.96
CDK5RAP3-217ENST00000580287 TIMM17AQ99595 171 aa9.06□□□□□ -0.96
CDK5RAP3-217ENST00000580287 IGHV3-53P01767 116 aa9.06□□□□□ -0.96
CDK5RAP3-217ENST00000580287 RHOHQ15669 191 aa9.06□□□□□ -0.96
CDK5RAP3-217ENST00000580287 CEMP1Q6PRD7 247 aaPredicted RBP9.06□□□□□ -0.96
CDK5RAP3-217ENST00000580287 IGHV3-38A0A0C4DH36 116 aa9.05□□□□□ -0.96
CDK5RAP3-217ENST00000580287 TSPAN13O95857 204 aa9.05□□□□□ -0.96
CDK5RAP3-217ENST00000580287 PSMB2P49721 201 aa9.05□□□□□ -0.96
CDK5RAP3-217ENST00000580287 C20orf203Q8NBC4 194 aa9.05□□□□□ -0.96
CDK5RAP3-217ENST00000580287 TMEM263Q8WUH6 116 aaKnown RBP9.05□□□□□ -0.96
CDK5RAP3-217ENST00000580287 LINC00467Q9BRT7 94 aa9.05□□□□□ -0.96
CDK5RAP3-217ENST00000580287 TENM3Q9P273 2699 aa9.05□□□□□ -0.96
CDK5RAP3-217ENST00000580287 MT-ATP8P03928 68 aa9.05□□□□□ -0.96
CDK5RAP3-217ENST00000580287 UBE2D1P51668 147 aa9.05□□□□□ -0.96
CDK5RAP3-217ENST00000580287 X6R8D5 127 aa9.05□□□□□ -0.96
CDK5RAP3-217ENST00000580287 LOC107984156A0A0G2JMH3 177 aa9.04□□□□□ -0.96
CDK5RAP3-217ENST00000580287 SPINK8P0C7L1 97 aa9.04□□□□□ -0.96
CDK5RAP3-217ENST00000580287 ARL17AQ8IVW1 177 aa9.04□□□□□ -0.96
CDK5RAP3-217ENST00000580287 PTH2Q96A98 100 aa9.04□□□□□ -0.96
CDK5RAP3-217ENST00000580287 RETNQ9HD89 108 aa9.04□□□□□ -0.96
CDK5RAP3-217ENST00000580287 GAGE7O76087 117 aa9.03□□□□□ -0.96
CDK5RAP3-217ENST00000580287 GAGE12FP0CL80 117 aa9.03□□□□□ -0.96
CDK5RAP3-217ENST00000580287 GAGE12GP0CL81 117 aa9.03□□□□□ -0.96
CDK5RAP3-217ENST00000580287 GAGE12IP0CL82 117 aa9.03□□□□□ -0.96
CDK5RAP3-217ENST00000580287 HERVK_113P61574 105 aa9.03□□□□□ -0.96
CDK5RAP3-217ENST00000580287 RHODO00212 210 aa9.03□□□□□ -0.96
CDK5RAP3-217ENST00000580287 XGP55808 180 aa9.03□□□□□ -0.96
CDK5RAP3-217ENST00000580287 UBE2D3P61077 147 aa9.03□□□□□ -0.96
CDK5RAP3-217ENST00000580287 UBE2D2P62837 147 aa9.03□□□□□ -0.96
CDK5RAP3-217ENST00000580287 SRSF9Q13242 221 aaKnown RBP eCLIP9.03□□□□□ -0.962e-12■■□□□ 12.4
CDK5RAP3-217ENST00000580287 PAPPA-AS1Q5QFB9 102 aa9.03□□□□□ -0.96
CDK5RAP3-217ENST00000580287 CARD19Q96LW7 228 aa9.03□□□□□ -0.96
CDK5RAP3-217ENST00000580287 APOC4P55056 127 aa9.02□□□□□ -0.96
CDK5RAP3-217ENST00000580287 Q6ZUT4 128 aa9.02□□□□□ -0.96
CDK5RAP3-217ENST00000580287 IL17DQ8TAD2 202 aa9.02□□□□□ -0.96
CDK5RAP3-217ENST00000580287 DNAH3Q8TD57 4116 aa9.02□□□□□ -0.96
CDK5RAP3-217ENST00000580287 DEFB130BP0DP73 79 aa9.01□□□□□ -0.97
CDK5RAP3-217ENST00000580287 DEFB130AP0DP74 79 aa9.01□□□□□ -0.97
CDK5RAP3-217ENST00000580287 KIR2DL5BQ8NHK3 375 aa9.01□□□□□ -0.97
CDK5RAP3-217ENST00000580287 C16orf74Q96GX8 76 aa9.01□□□□□ -0.97
CDK5RAP3-217ENST00000580287 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.01□□□□□ -0.97
CDK5RAP3-217ENST00000580287 IGKV2-29A2NJV5 120 aaPredicted RBP9.01□□□□□ -0.97
CDK5RAP3-217ENST00000580287 PIK3CD-AS1Q5SR53 167 aa9.01□□□□□ -0.97
CDK5RAP3-217ENST00000580287 IGLV4-3A0A075B6K6 122 aa9.01□□□□□ -0.97
CDK5RAP3-217ENST00000580287 PPDPFLQ8WWR9 84 aa9.01□□□□□ -0.97
CDK5RAP3-217ENST00000580287 A0A0J9YXV3 536 aa9□□□□□ -0.97
CDK5RAP3-217ENST00000580287 TCL1BO95988 128 aa9□□□□□ -0.97
CDK5RAP3-217ENST00000580287 TEN1Q86WV5 123 aa9□□□□□ -0.97
CDK5RAP3-217ENST00000580287 TRGV2A0A075B6R0 118 aa9□□□□□ -0.97
CDK5RAP3-217ENST00000580287 EDA2RQ9HAV5 297 aa9□□□□□ -0.97
CDK5RAP3-217ENST00000580287 IGHV4-28A0A0C4DH34 117 aa8.99□□□□□ -0.97
CDK5RAP3-217ENST00000580287 DAZ2Q13117 558 aaKnown RBP8.99□□□□□ -0.97
CDK5RAP3-217ENST00000580287 MRAPQ8TCY5 172 aa8.99□□□□□ -0.97
CDK5RAP3-217ENST00000580287 A0A0J9YY99 117 aa8.99□□□□□ -0.97
CDK5RAP3-217ENST00000580287 DEFB121Q5J5C9 76 aa8.99□□□□□ -0.97
CDK5RAP3-217ENST00000580287 LYRM7Q5U5X0 104 aa8.98□□□□□ -0.97
CDK5RAP3-217ENST00000580287 SBSPONQ8IVN8 264 aa8.98□□□□□ -0.97
CDK5RAP3-217ENST00000580287 RNF183Q96D59 192 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 184.1 ms