RNA–Protein interactions for RNA: ENST00000573169.1

NUP88-206, Transcript of nucleoporin 88, humanhuman

TSL 1 (best)

Gene NUP88, Length 1,195 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-206ENST00000573169 DUSP14O95147 198 aaKnown RBP4.86□□□□□ -1.63
NUP88-206ENST00000573169 IGHV3-23P01764 117 aa4.86□□□□□ -1.63
NUP88-206ENST00000573169 PRB4P10163 310 aaPredicted RBP4.86□□□□□ -1.63
NUP88-206ENST00000573169 TSPEAR-AS2P59090 65 aa4.86□□□□□ -1.63
NUP88-206ENST00000573169 ARL17AQ8IVW1 177 aa4.86□□□□□ -1.63
NUP88-206ENST00000573169 RNF152Q8N8N0 203 aa4.86□□□□□ -1.63
NUP88-206ENST00000573169 PTH2Q96A98 100 aa4.86□□□□□ -1.63
NUP88-206ENST00000573169 RPL39LQ96EH5 51 aaKnown RBP4.86□□□□□ -1.63
NUP88-206ENST00000573169 C20orf173Q96LM9 149 aa4.86□□□□□ -1.63
NUP88-206ENST00000573169 ODF3Q96PU9 254 aa4.86□□□□□ -1.63
NUP88-206ENST00000573169 B9D2Q9BPU9 175 aa4.86□□□□□ -1.63
NUP88-206ENST00000573169 MDFICQ9P1T7 246 aa4.86□□□□□ -1.63
NUP88-206ENST00000573169 TRBV10-2A0A0K0K1G8 114 aa4.85□□□□□ -1.63
NUP88-206ENST00000573169 TMEM223A0PJW6 202 aa4.85□□□□□ -1.63
NUP88-206ENST00000573169 KLLNB2CW77 178 aa4.85□□□□□ -1.63
NUP88-206ENST00000573169 H3BUA1 57 aa4.85□□□□□ -1.63
NUP88-206ENST00000573169 M0R2P5 195 aa4.85□□□□□ -1.63
NUP88-206ENST00000573169 NDUFA4O00483 81 aa4.85□□□□□ -1.63
NUP88-206ENST00000573169 RNASE4P34096 147 aaKnown RBP4.85□□□□□ -1.63
NUP88-206ENST00000573169 ANXA2RQ3ZCQ2 193 aa4.85□□□□□ -1.63
NUP88-206ENST00000573169 C14orf178Q8N769 122 aaPredicted RBP4.85□□□□□ -1.63
NUP88-206ENST00000573169 OR10J6PQ8NGY7 276 aa4.85□□□□□ -1.63
NUP88-206ENST00000573169 ZNRF2Q8NHG8 242 aa4.85□□□□□ -1.63
NUP88-206ENST00000573169 ANAPC13Q9BS18 74 aa4.85□□□□□ -1.63
NUP88-206ENST00000573169 PHLDA3Q9Y5J5 127 aa4.85□□□□□ -1.63
NUP88-206ENST00000573169 AGRNO00468 2067 aa4.85□□□□□ -1.63
NUP88-206ENST00000573169 NBEAL2Q6ZNJ1 2754 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 A4D1N5 150 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 G3V318 75 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 H3BT86 120 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 ATP6V0E1O15342 81 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 NDUFV3P56181 108 aaKnown RBP4.84□□□□□ -1.63
NUP88-206ENST00000573169 CFHR3Q02985 330 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 GAGE2BQ13066 116 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 ATXN8Q156A1 80 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 LINC01620Q4KN68 170 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 GAGE2EQ4V326 116 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 CLEC19AQ6UXS0 136 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 Q6ZQT7 251 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 WWC2-AS2Q96NR7 200 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 KIR2DL4Q99706 377 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 KLK15Q9H2R5 256 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 GAGE2DQ9UEU5 116 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 TP53TG1Q9Y2A0 90 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 ZNF256Q9Y2P7 627 aaPredicted RBP4.84□□□□□ -1.63
NUP88-206ENST00000573169 PYGO1Q9Y3Y4 419 aa4.84□□□□□ -1.63
NUP88-206ENST00000573169 HUWE1Q7Z6Z7 4374 aaKnown RBP4.84□□□□□ -1.63
NUP88-206ENST00000573169 GAGE12JA6NER3 117 aa4.83□□□□□ -1.64
NUP88-206ENST00000573169 GAGE7O76087 117 aa4.83□□□□□ -1.64
NUP88-206ENST00000573169 IGF1P05019 195 aa4.83□□□□□ -1.64
NUP88-206ENST00000573169 GAGE12FP0CL80 117 aa4.83□□□□□ -1.64
NUP88-206ENST00000573169 GAGE12GP0CL81 117 aa4.83□□□□□ -1.64
NUP88-206ENST00000573169 GAGE12IP0CL82 117 aa4.83□□□□□ -1.64
NUP88-206ENST00000573169 LGALS3P17931 250 aaKnown RBP4.83□□□□□ -1.64
NUP88-206ENST00000573169 S100A4P26447 101 aaKnown RBP4.83□□□□□ -1.64
NUP88-206ENST00000573169 PSMB8P28062 276 aa4.83□□□□□ -1.64
NUP88-206ENST00000573169 GAGE4Q13068 117 aa4.83□□□□□ -1.64
NUP88-206ENST00000573169 SUMO4Q6EEV6 95 aa4.83□□□□□ -1.64
NUP88-206ENST00000573169 USMG5Q96IX5 58 aa4.83□□□□□ -1.64
NUP88-206ENST00000573169 C9orf85Q96MD7 179 aa4.83□□□□□ -1.64
NUP88-206ENST00000573169 PPDPFQ9H3Y8 114 aa4.83□□□□□ -1.64
NUP88-206ENST00000573169 SPANXCQ9NY87 97 aa4.83□□□□□ -1.64
NUP88-206ENST00000573169 A0A0J9YXY3 114 aa4.82□□□□□ -1.64
NUP88-206ENST00000573169 TRBV7-7A0A0K0K1E9 115 aa4.82□□□□□ -1.64
NUP88-206ENST00000573169 C9JAW5 83 aa4.82□□□□□ -1.64
NUP88-206ENST00000573169 K7EMT4 169 aa4.82□□□□□ -1.64
NUP88-206ENST00000573169 TIMM17BO60830 172 aa4.82□□□□□ -1.64
NUP88-206ENST00000573169 SNCGO76070 127 aa4.82□□□□□ -1.64
NUP88-206ENST00000573169 ELANEP08246 267 aa4.82□□□□□ -1.64
NUP88-206ENST00000573169 IFITM1P13164 125 aa4.82□□□□□ -1.64
NUP88-206ENST00000573169 ZNF22P17026 224 aaPredicted RBP4.82□□□□□ -1.64
NUP88-206ENST00000573169 C9orf66Q5T8R8 295 aa4.82□□□□□ -1.64
NUP88-206ENST00000573169 C20orf203Q8NBC4 194 aa4.82□□□□□ -1.64
NUP88-206ENST00000573169 C4orf3Q8WVX3 66 aa4.82□□□□□ -1.64
NUP88-206ENST00000573169 LITAFQ99732 161 aa4.82□□□□□ -1.64
NUP88-206ENST00000573169 FAM110AQ9BQ89 295 aa4.82□□□□□ -1.64
NUP88-206ENST00000573169 ZNF580Q9UK33 172 aa4.82□□□□□ -1.64
NUP88-206ENST00000573169 RYR2Q92736 4967 aa4.82□□□□□ -1.64
NUP88-206ENST00000573169 IGHV3OR16-8A0A075B7F1 116 aa4.81□□□□□ -1.64
NUP88-206ENST00000573169 TRAV41A0A0B4J266 112 aa4.81□□□□□ -1.64
NUP88-206ENST00000573169 IGHV3-35A0A0C4DH35 117 aa4.81□□□□□ -1.64
NUP88-206ENST00000573169 IGHV3-66A0A0C4DH42 116 aa4.81□□□□□ -1.64
NUP88-206ENST00000573169 M0QY20 66 aa4.81□□□□□ -1.64
NUP88-206ENST00000573169 GNRH2O43555 120 aa4.81□□□□□ -1.64
NUP88-206ENST00000573169 MGPP08493 103 aa4.81□□□□□ -1.64
NUP88-206ENST00000573169 MRPS36P82909 103 aaKnown RBP4.81□□□□□ -1.64
NUP88-206ENST00000573169 ECSCRQ19T08 205 aa4.81□□□□□ -1.64
NUP88-206ENST00000573169 PIK3CD-AS1Q5SR53 167 aa4.81□□□□□ -1.64
NUP88-206ENST00000573169 TMEM170BQ5T4T1 132 aa4.81□□□□□ -1.64
NUP88-206ENST00000573169 TRPT1Q86TN4 253 aaKnown RBP4.81□□□□□ -1.64
NUP88-206ENST00000573169 MUSTN1Q8IVN3 82 aa4.81□□□□□ -1.64
NUP88-206ENST00000573169 NTN5Q8WTR8 489 aaPredicted RBP4.81□□□□□ -1.64
NUP88-206ENST00000573169 IMUPQ9GZP8 106 aa4.81□□□□□ -1.64
NUP88-206ENST00000573169 DYNC2H1Q8NCM8 4307 aaKnown RBP4.81□□□□□ -1.64
NUP88-206ENST00000573169 IGLV4-3A0A075B6K6 122 aa4.8□□□□□ -1.64
NUP88-206ENST00000573169 TRAV8-4A0A0B4J246 113 aa4.8□□□□□ -1.64
NUP88-206ENST00000573169 TRAV4A0A0B4J268 109 aa4.8□□□□□ -1.64
NUP88-206ENST00000573169 IGHV3-16A0A0C4DH30 117 aa4.8□□□□□ -1.64
NUP88-206ENST00000573169 IGHV3-11P01762 117 aa4.8□□□□□ -1.64
NUP88-206ENST00000573169 ACYP1P07311 99 aa4.8□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms