RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 A0A1B0GUT8 65 aa4.84□□□□□ -1.63
NUP88-205ENST00000572809 FAM231BA6NCW3 169 aa4.84□□□□□ -1.63
NUP88-205ENST00000572809 HIGD1CA8MV81 97 aa4.84□□□□□ -1.63
NUP88-205ENST00000572809 HLA-DQA1P01909 254 aa4.84□□□□□ -1.63
NUP88-205ENST00000572809 FAM74A3Q4VXF1 159 aa4.84□□□□□ -1.63
NUP88-205ENST00000572809 KRTAP26-1Q6PEX3 210 aa4.84□□□□□ -1.63
NUP88-205ENST00000572809 Q6ZSA8 131 aa4.84□□□□□ -1.63
NUP88-205ENST00000572809 RPL39LQ96EH5 51 aaKnown RBP4.84□□□□□ -1.63
NUP88-205ENST00000572809 GFRA4Q9GZZ7 299 aa4.84□□□□□ -1.63
NUP88-205ENST00000572809 IGLV10-54A0A075B6I4 117 aa4.83□□□□□ -1.64
NUP88-205ENST00000572809 IGLV5-39A0A0G2JS06 123 aa4.83□□□□□ -1.64
NUP88-205ENST00000572809 SDHAF1A6NFY7 115 aa4.83□□□□□ -1.64
NUP88-205ENST00000572809 NCR2O95944 276 aa4.83□□□□□ -1.64
NUP88-205ENST00000572809 PRSS1P07477 247 aa4.83□□□□□ -1.64
NUP88-205ENST00000572809 PMCHP20382 165 aa4.83□□□□□ -1.64
NUP88-205ENST00000572809 PEA15Q15121 130 aa4.83□□□□□ -1.64
NUP88-205ENST00000572809 TMEM191AQ9H0A3 160 aa4.83□□□□□ -1.64
NUP88-205ENST00000572809 TRBV6-5A0A0K0K1A5 114 aa4.82□□□□□ -1.64
NUP88-205ENST00000572809 C9JQL5 133 aa4.82□□□□□ -1.64
NUP88-205ENST00000572809 H7C423 109 aa4.82□□□□□ -1.64
NUP88-205ENST00000572809 I3L3M4 83 aa4.82□□□□□ -1.64
NUP88-205ENST00000572809 VCYO14598 125 aa4.82□□□□□ -1.64
NUP88-205ENST00000572809 RAB4AP20338 218 aa4.82□□□□□ -1.64
NUP88-205ENST00000572809 RPL23P62829 140 aaKnown RBP4.82□□□□□ -1.64
NUP88-205ENST00000572809 RIGQ13278 110 aa4.82□□□□□ -1.64
NUP88-205ENST00000572809 AMMECR1LQ6DCA0 310 aa4.82□□□□□ -1.64
NUP88-205ENST00000572809 ISOC2Q96AB3 205 aa4.82□□□□□ -1.64
NUP88-205ENST00000572809 CHAC1Q9BUX1 264 aa4.82□□□□□ -1.64
NUP88-205ENST00000572809 SMDT1Q9H4I9 107 aa4.82□□□□□ -1.64
NUP88-205ENST00000572809 ST20Q9HBF5 79 aa4.82□□□□□ -1.64
NUP88-205ENST00000572809 V9GYV3 84 aa4.82□□□□□ -1.64
NUP88-205ENST00000572809 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.81□□□□□ -1.64
NUP88-205ENST00000572809 IGKV2-29A2NJV5 120 aaPredicted RBP4.81□□□□□ -1.64
NUP88-205ENST00000572809 GAS8-AS1O95177 125 aa4.81□□□□□ -1.64
NUP88-205ENST00000572809 APCSP02743 223 aa4.81□□□□□ -1.64
NUP88-205ENST00000572809 ADIRFQ15847 76 aa4.81□□□□□ -1.64
NUP88-205ENST00000572809 RNASEKQ6P5S7 137 aaKnown RBP4.81□□□□□ -1.64
NUP88-205ENST00000572809 SCXQ7RTU7 201 aa4.81□□□□□ -1.64
NUP88-205ENST00000572809 C9orf163Q8N9P6 203 aa4.81□□□□□ -1.64
NUP88-205ENST00000572809 NUP35Q8NFH5 326 aa4.81□□□□□ -1.64
NUP88-205ENST00000572809 RNF185Q96GF1 192 aa4.81□□□□□ -1.64
NUP88-205ENST00000572809 NAT8Q9UHE5 227 aa4.81□□□□□ -1.64
NUP88-205ENST00000572809 NAT8BQ9UHF3 227 aa4.81□□□□□ -1.64
NUP88-205ENST00000572809 ABCA13Q86UQ4 5058 aa4.81□□□□□ -1.64
NUP88-205ENST00000572809 IGKV3OR2-268A0A0C4DH90 116 aa4.8□□□□□ -1.64
NUP88-205ENST00000572809 hDV102S1A0JD36 115 aa4.8□□□□□ -1.64
NUP88-205ENST00000572809 FGF6P10767 208 aa4.8□□□□□ -1.64
NUP88-205ENST00000572809 POLR2KP53803 58 aaKnown RBP4.8□□□□□ -1.64
NUP88-205ENST00000572809 AMN1Q8IY45 258 aa4.8□□□□□ -1.64
NUP88-205ENST00000572809 CIRBP-AS1Q8TBR5 109 aa4.8□□□□□ -1.64
NUP88-205ENST00000572809 MRAP2Q96G30 205 aa4.8□□□□□ -1.64
NUP88-205ENST00000572809 BTF3L4Q96K17 158 aa4.8□□□□□ -1.64
NUP88-205ENST00000572809 SMIM27A0A1W2PRY6 76 aa4.79□□□□□ -1.64
NUP88-205ENST00000572809 PPP1R17O96001 155 aa4.79□□□□□ -1.64
NUP88-205ENST00000572809 ESDP10768 282 aa4.79□□□□□ -1.64
NUP88-205ENST00000572809 ZNF25P17030 456 aaPredicted RBP4.79□□□□□ -1.64
NUP88-205ENST00000572809 RPS10P46783 165 aaKnown RBP4.79□□□□□ -1.64
NUP88-205ENST00000572809 SDIM1Q6ZPB5 146 aa4.79□□□□□ -1.64
NUP88-205ENST00000572809 URB1-AS1Q96HZ7 61 aa4.79□□□□□ -1.64
NUP88-205ENST00000572809 TMEM101Q96IK0 257 aa4.79□□□□□ -1.64
NUP88-205ENST00000572809 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.78□□□□□ -1.64
NUP88-205ENST00000572809 TRBV27A0A0K0K1C4 114 aa4.78□□□□□ -1.64
NUP88-205ENST00000572809 KRTAP29-1A8MX34 341 aaPredicted RBP4.78□□□□□ -1.64
NUP88-205ENST00000572809 SMKR1H3BMG3 65 aa4.78□□□□□ -1.64
NUP88-205ENST00000572809 TSHBP01222 138 aa4.78□□□□□ -1.64
NUP88-205ENST00000572809 CNBPP62633 177 aaKnown RBP4.78□□□□□ -1.64
NUP88-205ENST00000572809 MRPL51Q4U2R6 128 aaKnown RBP4.78□□□□□ -1.64
NUP88-205ENST00000572809 FAM104BQ5XKR9 115 aa4.78□□□□□ -1.64
NUP88-205ENST00000572809 OR5A1Q8NGJ0 315 aa4.78□□□□□ -1.64
NUP88-205ENST00000572809 CHCHD10Q8WYQ3 142 aaPredicted RBP4.78□□□□□ -1.64
NUP88-205ENST00000572809 TMEM242Q9NWH2 141 aa4.78□□□□□ -1.64
NUP88-205ENST00000572809 SRRM2Q9UQ35 2752 aaKnown RBP4.78□□□□□ -1.64
NUP88-205ENST00000572809 FAT1Q14517 4588 aa4.77□□□□□ -1.65
NUP88-205ENST00000572809 A0A1B0GW15 77 aa4.77□□□□□ -1.65
NUP88-205ENST00000572809 LINC00862A6NCI5 91 aa4.77□□□□□ -1.65
NUP88-205ENST00000572809 FCER1GP30273 86 aa4.77□□□□□ -1.65
NUP88-205ENST00000572809 NRACQ8N912 160 aa4.77□□□□□ -1.65
NUP88-205ENST00000572809 DPH3Q96FX2 82 aa4.77□□□□□ -1.65
NUP88-205ENST00000572809 CDC42SE2Q9NRR3 84 aa4.77□□□□□ -1.65
NUP88-205ENST00000572809 DNAH8Q96JB1 4490 aa4.77□□□□□ -1.65
NUP88-205ENST00000572809 TRBV24-1A0A075B6N3 115 aa4.76□□□□□ -1.65
NUP88-205ENST00000572809 IGHV3-64A0A075B6Q5 118 aa4.76□□□□□ -1.65
NUP88-205ENST00000572809 LINC00959A0A1B0GUT2 108 aa4.76□□□□□ -1.65
NUP88-205ENST00000572809 C7orf77A4D0Y5 90 aa4.76□□□□□ -1.65
NUP88-205ENST00000572809 PPP1R2P9O14990 202 aa4.76□□□□□ -1.65
NUP88-205ENST00000572809 CKS2P33552 79 aa4.76□□□□□ -1.65
NUP88-205ENST00000572809 RAB14P61106 215 aa4.76□□□□□ -1.65
NUP88-205ENST00000572809 SS18Q15532 418 aa4.76□□□□□ -1.65
NUP88-205ENST00000572809 MRPL52Q86TS9 123 aaKnown RBP4.76□□□□□ -1.65
NUP88-205ENST00000572809 ZNF664Q8N3J9 261 aa4.76□□□□□ -1.65
NUP88-205ENST00000572809 C15orf56Q8N910 161 aa4.76□□□□□ -1.65
NUP88-205ENST00000572809 KIR2DL4Q99706 377 aa4.76□□□□□ -1.65
NUP88-205ENST00000572809 F8W036 122 aa4.75□□□□□ -1.65
NUP88-205ENST00000572809 PANO1I0J062 215 aa4.75□□□□□ -1.65
NUP88-205ENST00000572809 CCL25O15444 150 aa4.75□□□□□ -1.65
NUP88-205ENST00000572809 S100A8P05109 93 aa4.75□□□□□ -1.65
NUP88-205ENST00000572809 VPREB1P12018 145 aa4.75□□□□□ -1.65
NUP88-205ENST00000572809 XCL1P47992 114 aa4.75□□□□□ -1.65
NUP88-205ENST00000572809 SMAGPQ0VAQ4 97 aa4.75□□□□□ -1.65
NUP88-205ENST00000572809 HIGD2BQ4VC39 106 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms