RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 Q8NAQ8 132 aa4.11□□□□□ -1.75
VPS53-212ENST00000572259 AQP10Q96PS8 301 aa4.11□□□□□ -1.75
VPS53-212ENST00000572259 CHCHD7Q9BUK0 85 aa4.11□□□□□ -1.75
VPS53-212ENST00000572259 ZNF471Q9BX82 626 aaPredicted RBP4.11□□□□□ -1.75
VPS53-212ENST00000572259 NKX6-2Q9C056 277 aaPredicted RBP4.11□□□□□ -1.75
VPS53-212ENST00000572259 ZNF586Q9NXT0 402 aa4.11□□□□□ -1.75
VPS53-212ENST00000572259 TRAV10A0A0B4J240 114 aa4.1□□□□□ -1.75
VPS53-212ENST00000572259 ZNF705FA8MVS1 300 aaPredicted RBP4.1□□□□□ -1.75
VPS53-212ENST00000572259 H3BQ15 152 aa4.1□□□□□ -1.75
VPS53-212ENST00000572259 BPY2O14599 106 aa4.1□□□□□ -1.75
VPS53-212ENST00000572259 UBE2L6O14933 153 aa4.1□□□□□ -1.75
VPS53-212ENST00000572259 ZNF705BP0CI00 300 aaPredicted RBP4.1□□□□□ -1.75
VPS53-212ENST00000572259 PYYP10082 97 aa4.1□□□□□ -1.75
VPS53-212ENST00000572259 HLA-DMBP28068 263 aa4.1□□□□□ -1.75
VPS53-212ENST00000572259 KRTAP10-7P60409 375 aaPredicted RBP4.1□□□□□ -1.75
VPS53-212ENST00000572259 RNASE13Q5GAN3 156 aaKnown RBP4.1□□□□□ -1.75
VPS53-212ENST00000572259 AMTNQ6UX39 209 aa4.1□□□□□ -1.75
VPS53-212ENST00000572259 MIR17HGQ75NE6 70 aa4.1□□□□□ -1.75
VPS53-212ENST00000572259 CMTM2Q8TAZ6 248 aa4.1□□□□□ -1.75
VPS53-212ENST00000572259 CARD19Q96LW7 228 aa4.1□□□□□ -1.75
VPS53-212ENST00000572259 ODF3Q96PU9 254 aa4.1□□□□□ -1.75
VPS53-212ENST00000572259 PSMG3Q9BT73 122 aaPredicted RBP4.1□□□□□ -1.75
VPS53-212ENST00000572259 CSMD3Q7Z407 3707 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 LCE6AA0A183 80 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 FABP5P3A8MUU1 101 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 IGLL5B9A064 214 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 H7BYZ3 331 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 DPM2O94777 84 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 SLC25A5P05141 298 aaKnown RBP4.09□□□□□ -1.75
VPS53-212ENST00000572259 NMBP08949 121 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 HTN1P15515 57 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 EIF5AP63241 154 aaKnown RBP4.09□□□□□ -1.75
VPS53-212ENST00000572259 UBE2L3P68036 154 aaKnown RBP4.09□□□□□ -1.75
VPS53-212ENST00000572259 DNLZQ5SXM8 178 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 KTN1-AS1Q86SY8 53 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 RPP25LQ8N5L8 163 aaKnown RBP4.09□□□□□ -1.75
VPS53-212ENST00000572259 FER1L6-AS1Q8NA97 138 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 FAM167A-AS1Q96KT0 104 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 VGLL1Q99990 258 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 GFRA4Q9GZZ7 299 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 TMEM167BQ9NRX6 74 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 TNFSF18Q9UNG2 199 aa4.09□□□□□ -1.75
VPS53-212ENST00000572259 TRAV12-2A0A075B6T6 113 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 DEFB131BA0A096LNP1 70 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 A0A0D9SG52 128 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 RBAKDNA6NC62 111 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 C9JCJ5 164 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 F6UZH7 168 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 J3QR89 54 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 M0R3E3 92 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 GPX1P07203 203 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 P0DMU3 169 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 FAM231AP0DMU4 169 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 FAM231CP0DMU5 169 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 ATP6V0CP27449 155 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 OCIAD2Q56VL3 154 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 SLC25A34Q6PIV7 304 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 PRR15Q8IV56 129 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 C16orf74Q96GX8 76 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 PYGO2Q9BRQ0 406 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 PRADC1Q9BSG0 188 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 OTORQ9NRC9 128 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 MRPL16Q9NX20 251 aaKnown RBP4.08□□□□□ -1.76
VPS53-212ENST00000572259 TIMM8BQ9Y5J9 83 aaPredicted RBP4.08□□□□□ -1.76
VPS53-212ENST00000572259 STARD9Q9P2P6 4700 aa4.08□□□□□ -1.76
VPS53-212ENST00000572259 TRAV12-3A0A0B4J271 114 aa4.07□□□□□ -1.76
VPS53-212ENST00000572259 KANTRA0A1W2PQU2 76 aa4.07□□□□□ -1.76
VPS53-212ENST00000572259 C7orf71A4D174 169 aa4.07□□□□□ -1.76
VPS53-212ENST00000572259 HMSDA8MTL9 139 aa4.07□□□□□ -1.76
VPS53-212ENST00000572259 BCL2L11O43521 198 aa4.07□□□□□ -1.76
VPS53-212ENST00000572259 LY6G6CO95867 125 aa4.07□□□□□ -1.76
VPS53-212ENST00000572259 APCSP02743 223 aa4.07□□□□□ -1.76
VPS53-212ENST00000572259 RNASE4P34096 147 aaKnown RBP4.07□□□□□ -1.76
VPS53-212ENST00000572259 ZNF345Q14585 488 aa4.07□□□□□ -1.76
VPS53-212ENST00000572259 Q5BKY6 102 aa4.07□□□□□ -1.76
VPS53-212ENST00000572259 RPL7L1Q6DKI1 246 aaKnown RBP4.07□□□□□ -1.76
VPS53-212ENST00000572259 LCA10Q71F78 164 aa4.07□□□□□ -1.76
VPS53-212ENST00000572259 KRTAP7-1Q8IUC3 87 aa4.07□□□□□ -1.76
VPS53-212ENST00000572259 TMEM263Q8WUH6 116 aaKnown RBP4.07□□□□□ -1.76
VPS53-212ENST00000572259 HYLS1Q96M11 299 aa4.07□□□□□ -1.76
VPS53-212ENST00000572259 AGPAT4-IT1Q9H0P7 198 aa4.07□□□□□ -1.76
VPS53-212ENST00000572259 LENEPQ9Y5L5 61 aa4.07□□□□□ -1.76
VPS53-212ENST00000572259 MUC4Q99102 2169 aa4.07□□□□□ -1.76
VPS53-212ENST00000572259 KMT2CQ8NEZ4 4911 aaKnown RBP4.06□□□□□ -1.76
VPS53-212ENST00000572259 CTXND1A0A1B0GTU2 59 aa4.06□□□□□ -1.76
VPS53-212ENST00000572259 A0A1B0GVX0 72 aa4.06□□□□□ -1.76
VPS53-212ENST00000572259 C20orf202A1L168 122 aa4.06□□□□□ -1.76
VPS53-212ENST00000572259 ARL14EPLP0DKL9 152 aa4.06□□□□□ -1.76
VPS53-212ENST00000572259 GCHFRP30047 84 aa4.06□□□□□ -1.76
VPS53-212ENST00000572259 CCL20P78556 96 aa4.06□□□□□ -1.76
VPS53-212ENST00000572259 LGALS9CQ6DKI2 356 aa4.06□□□□□ -1.76
VPS53-212ENST00000572259 EIF5AL1Q6IS14 154 aaKnown RBP4.06□□□□□ -1.76
VPS53-212ENST00000572259 KCNRGQ8N5I3 272 aa4.06□□□□□ -1.76
VPS53-212ENST00000572259 NAT8Q9UHE5 227 aa4.06□□□□□ -1.76
VPS53-212ENST00000572259 CELA1Q9UNI1 258 aa4.06□□□□□ -1.76
VPS53-212ENST00000572259 PLECQ15149 4684 aaKnown RBP4.06□□□□□ -1.76
VPS53-212ENST00000572259 IGKV2-40A0A087WW87 121 aaPredicted RBP4.05□□□□□ -1.76
VPS53-212ENST00000572259 UMAD1C9J7I0 102 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 J3QQQ9 107 aa4.05□□□□□ -1.76
VPS53-212ENST00000572259 IGKV2D-40P01614 121 aaPredicted RBP4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms