RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 DEFB134Q4QY38 66 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 HCP5Q6MZN7 132 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 C1orf64Q8NEQ6 169 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 WFDC9Q8NEX5 89 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 FAM218AQ96MZ4 157 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 FGF23Q9GZV9 251 aaPredicted RBP2.22□□□□□ -2.05
VPS35-208ENST00000568612 LINC00574Q9H8X3 128 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 CDC42SE2Q9NRR3 84 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 MRPL36Q9P0J6 103 aaKnown RBP2.22□□□□□ -2.05
VPS35-208ENST00000568612 USF3Q68DE3 2245 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 SPAG17Q6Q759 2223 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 ARFGEF3Q5TH69 2177 aa2.22□□□□□ -2.05
VPS35-208ENST00000568612 LCE6AA0A183 80 aa2.21□□□□□ -2.06
VPS35-208ENST00000568612 LOC101927531A0A1B0GV80 90 aa2.21□□□□□ -2.06
VPS35-208ENST00000568612 C19orf84I3L1E1 186 aa2.21□□□□□ -2.06
VPS35-208ENST00000568612 MOBPQ13875 183 aa2.21□□□□□ -2.06
VPS35-208ENST00000568612 PDE6HQ13956 83 aa2.21□□□□□ -2.06
VPS35-208ENST00000568612 C9orf116Q5BN46 136 aaPredicted RBP2.21□□□□□ -2.06
VPS35-208ENST00000568612 CASC2Q6XLA1 102 aa2.21□□□□□ -2.06
VPS35-208ENST00000568612 SCXQ7RTU7 201 aa2.21□□□□□ -2.06
VPS35-208ENST00000568612 MAPK1IP1LQ8NDC0 245 aa2.21□□□□□ -2.06
VPS35-208ENST00000568612 ZNF625Q96I27 306 aaPredicted RBP2.21□□□□□ -2.06
VPS35-208ENST00000568612 LINC00167Q96N53 147 aa2.21□□□□□ -2.06
VPS35-208ENST00000568612 UNC13CQ8NB66 2214 aa2.21□□□□□ -2.06
VPS35-208ENST00000568612 H0YGX0 51 aa2.2□□□□□ -2.06
VPS35-208ENST00000568612 H3BRN7 92 aa2.2□□□□□ -2.06
VPS35-208ENST00000568612 NDUFA1O15239 70 aa2.2□□□□□ -2.06
VPS35-208ENST00000568612 IGHV3-30-3P0DP02 117 aa2.2□□□□□ -2.06
VPS35-208ENST00000568612 PRB4P10163 310 aaPredicted RBP2.2□□□□□ -2.06
VPS35-208ENST00000568612 RPS21P63220 83 aaKnown RBP2.2□□□□□ -2.06
VPS35-208ENST00000568612 C9orf129Q5T035 196 aaKnown RBP2.2□□□□□ -2.06
VPS35-208ENST00000568612 MIR7-3HGQ8N6C7 128 aa2.2□□□□□ -2.06
VPS35-208ENST00000568612 COX14Q96I36 57 aa2.2□□□□□ -2.06
VPS35-208ENST00000568612 RETNLBQ9BQ08 111 aa2.2□□□□□ -2.06
VPS35-208ENST00000568612 PRR15LQ9BU68 103 aa2.2□□□□□ -2.06
VPS35-208ENST00000568612 OCR1Q9BZK8 76 aa2.2□□□□□ -2.06
VPS35-208ENST00000568612 ZNF702PQ9H963 129 aa2.2□□□□□ -2.06
VPS35-208ENST00000568612 ALPK2Q86TB3 2170 aa2.2□□□□□ -2.06
VPS35-208ENST00000568612 IGHV1OR15-1A0A075B7D0 117 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 LOC110117498A0A087WWA1 95 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 TRAV21A0A0B4J279 112 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 IGHV1-18A0A0C4DH31 117 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 IGHV7-4-1A0A0J9YVY3 117 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 A6NED7 52 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 BPY2O14599 106 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 NCR3O14931 201 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 LY6HO94772 140 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 CRPP02741 224 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 ELOF1P60002 83 aaKnown RBP2.19□□□□□ -2.06
VPS35-208ENST00000568612 LMO4P61968 165 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 NDPQ00604 133 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 FAM27BQ5VT28 67 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 PRSS33Q8NF86 280 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 LINC00308Q8TCZ7 52 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 ZCCHC13Q8WW36 166 aaKnown RBP2.19□□□□□ -2.06
VPS35-208ENST00000568612 CHCHD10Q8WYQ3 142 aaPredicted RBP2.19□□□□□ -2.06
VPS35-208ENST00000568612 Q9BRP9 147 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 ORMDL1Q9P0S3 153 aa2.19□□□□□ -2.06
VPS35-208ENST00000568612 DIDO1Q9BTC0 2240 aaKnown RBP2.18□□□□□ -2.06
VPS35-208ENST00000568612 TRBV10-1A0A0K0K1A3 114 aa2.18□□□□□ -2.06
VPS35-208ENST00000568612 IGKV2-29A2NJV5 120 aaPredicted RBP2.18□□□□□ -2.06
VPS35-208ENST00000568612 KRTAP16-1A8MUX0 517 aa2.18□□□□□ -2.06
VPS35-208ENST00000568612 IGLV1-51P01701 117 aa2.18□□□□□ -2.06
VPS35-208ENST00000568612 SAA2P0DJI9 122 aaPredicted RBP2.18□□□□□ -2.06
VPS35-208ENST00000568612 ZNF32P17041 273 aa2.18□□□□□ -2.06
VPS35-208ENST00000568612 ERHP84090 104 aaKnown RBP2.18□□□□□ -2.06
VPS35-208ENST00000568612 BSPH1Q075Z2 132 aa2.18□□□□□ -2.06
VPS35-208ENST00000568612 FDCSPQ8NFU4 85 aa2.18□□□□□ -2.06
VPS35-208ENST00000568612 FLVCR1-AS1Q8TAF5 88 aa2.18□□□□□ -2.06
VPS35-208ENST00000568612 FREM1Q5H8C1 2179 aa2.17□□□□□ -2.06
VPS35-208ENST00000568612 NOTCH3Q9UM47 2321 aa2.17□□□□□ -2.06
VPS35-208ENST00000568612 IGHV3-64A0A075B6Q5 118 aa2.17□□□□□ -2.06
VPS35-208ENST00000568612 IGKV2-40A0A087WW87 121 aaPredicted RBP2.17□□□□□ -2.06
VPS35-208ENST00000568612 TRBV6-5A0A0K0K1A5 114 aa2.17□□□□□ -2.06
VPS35-208ENST00000568612 PINLYPA6NC86 204 aa2.17□□□□□ -2.06
VPS35-208ENST00000568612 H0YGG7 62 aa2.17□□□□□ -2.06
VPS35-208ENST00000568612 IGKV2D-40P01614 121 aaPredicted RBP2.17□□□□□ -2.06
VPS35-208ENST00000568612 IGHV4-31P0DP07 118 aa2.17□□□□□ -2.06
VPS35-208ENST00000568612 RPL27AP46776 148 aaKnown RBP2.17□□□□□ -2.06
VPS35-208ENST00000568612 DEFB114Q30KQ6 69 aa2.17□□□□□ -2.06
VPS35-208ENST00000568612 C11orf71Q6IPW1 123 aa2.17□□□□□ -2.06
VPS35-208ENST00000568612 Q6ZQT0 140 aa2.17□□□□□ -2.06
VPS35-208ENST00000568612 Q8N814 137 aa2.17□□□□□ -2.06
VPS35-208ENST00000568612 RPL39LQ96EH5 51 aaKnown RBP2.17□□□□□ -2.06
VPS35-208ENST00000568612 HIGD2AQ9BW72 106 aa2.17□□□□□ -2.06
VPS35-208ENST00000568612 NDUFA4L2Q9NRX3 87 aa2.17□□□□□ -2.06
VPS35-208ENST00000568612 ZNF407Q9C0G0 2248 aa2.17□□□□□ -2.06
VPS35-208ENST00000568612 A0A0C4DFX4 3053 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 A0A1B0GW54 56 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 LRCOL1A6NCL2 159 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 B4DSR2 109 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 LECT2O14960 151 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 NDUFB1O75438 58 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 IGKV3-11P04433 115 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 PDE6GP18545 87 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 PI4KAP42356 2102 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 POLR2KP53803 58 aaKnown RBP2.16□□□□□ -2.06
VPS35-208ENST00000568612 LYZP61626 148 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 RPL39P5Q59GN2 51 aa2.16□□□□□ -2.06
VPS35-208ENST00000568612 C9orf66Q5T8R8 295 aa2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms