RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 RPL35P42766 123 aaKnown RBP9.56□□□□□ -0.88
CLK3-223ENST00000568488 IFITM3Q01628 133 aa9.56□□□□□ -0.88
CLK3-223ENST00000568488 TWIST1Q15672 202 aa9.56□□□□□ -0.88
CLK3-223ENST00000568488 S100ZQ8WXG8 99 aa9.56□□□□□ -0.88
CLK3-223ENST00000568488 CDC42SE2Q9NRR3 84 aa9.56□□□□□ -0.88
CLK3-223ENST00000568488 XKRY2A2RUG3 117 aa9.55□□□□□ -0.88
CLK3-223ENST00000568488 C19orf71A6NCJ1 209 aa9.55□□□□□ -0.88
CLK3-223ENST00000568488 IFNA1P01562 189 aa9.55□□□□□ -0.88
CLK3-223ENST00000568488 Q5BKY6 102 aa9.55□□□□□ -0.88
CLK3-223ENST00000568488 LINC00299Q6ZSB3 139 aa9.55□□□□□ -0.88
CLK3-223ENST00000568488 I3L3M4 83 aa9.54□□□□□ -0.88
CLK3-223ENST00000568488 RNF151Q2KHN1 245 aa9.54□□□□□ -0.88
CLK3-223ENST00000568488 C5orf38Q86SI9 138 aa9.54□□□□□ -0.88
CLK3-223ENST00000568488 RETNLBQ9BQ08 111 aa9.54□□□□□ -0.88
CLK3-223ENST00000568488 C1orf196B1AJZ1 125 aa9.53□□□□□ -0.88
CLK3-223ENST00000568488 ESDP10768 282 aa9.53□□□□□ -0.88
CLK3-223ENST00000568488 SPAG11BQ08648 103 aa9.53□□□□□ -0.88
CLK3-223ENST00000568488 SFT2D1Q8WV19 159 aa9.53□□□□□ -0.88
CLK3-223ENST00000568488 MRAP2Q96G30 205 aa9.53□□□□□ -0.88
CLK3-223ENST00000568488 IMMP2LQ96T52 175 aa9.52□□□□□ -0.89
CLK3-223ENST00000568488 RPP21Q9H633 154 aaKnown RBP9.52□□□□□ -0.89
CLK3-223ENST00000568488 FXYD6-FXYD2A0A087WZ82 144 aa9.51□□□□□ -0.89
CLK3-223ENST00000568488 LINC01547P58512 204 aaPredicted RBP9.51□□□□□ -0.89
CLK3-223ENST00000568488 GAGE2EQ4V326 116 aa9.51□□□□□ -0.89
CLK3-223ENST00000568488 CENPWQ5EE01 88 aa9.51□□□□□ -0.89
CLK3-223ENST00000568488 C9orf62Q8N4C0 152 aa9.51□□□□□ -0.89
CLK3-223ENST00000568488 KCNRGQ8N5I3 272 aa9.51□□□□□ -0.89
CLK3-223ENST00000568488 GAGE2DQ9UEU5 116 aa9.51□□□□□ -0.89
CLK3-223ENST00000568488 G3V3Q6 166 aa9.5□□□□□ -0.89
CLK3-223ENST00000568488 M0QXV9 152 aa9.5□□□□□ -0.89
CLK3-223ENST00000568488 TYMSOSQ8TAI1 123 aa9.5□□□□□ -0.89
CLK3-223ENST00000568488 TMEM242Q9NWH2 141 aa9.5□□□□□ -0.89
CLK3-223ENST00000568488 ALG5Q9Y673 324 aa9.5□□□□□ -0.89
CLK3-223ENST00000568488 ZNF861PO60384 105 aa9.49□□□□□ -0.89
CLK3-223ENST00000568488 TSHBP01222 138 aa9.49□□□□□ -0.89
CLK3-223ENST00000568488 FOXA3P55318 350 aaPredicted RBP9.49□□□□□ -0.89
CLK3-223ENST00000568488 SMIM15Q7Z3B0 74 aa9.49□□□□□ -0.89
CLK3-223ENST00000568488 MRPL52Q86TS9 123 aaKnown RBP9.49□□□□□ -0.89
CLK3-223ENST00000568488 FAM213BQ8TBF2 198 aa9.49□□□□□ -0.89
CLK3-223ENST00000568488 MRPL35Q9NZE8 188 aaKnown RBP9.49□□□□□ -0.89
CLK3-223ENST00000568488 A0A087X002 238 aa9.48□□□□□ -0.89
CLK3-223ENST00000568488 TRAV13-1A0A0B4J241 112 aa9.48□□□□□ -0.89
CLK3-223ENST00000568488 RNASE13Q5GAN3 156 aaKnown RBP9.48□□□□□ -0.89
CLK3-223ENST00000568488 TEX261Q6UWH6 196 aa9.48□□□□□ -0.89
CLK3-223ENST00000568488 RAB19A4D1S5 217 aa9.47□□□□□ -0.89
CLK3-223ENST00000568488 CTRLP40313 264 aa9.47□□□□□ -0.89
CLK3-223ENST00000568488 KRTAP7-1Q8IUC3 87 aa9.47□□□□□ -0.89
CLK3-223ENST00000568488 MBD3L1Q8WWY6 194 aa9.47□□□□□ -0.89
CLK3-223ENST00000568488 GNG4P50150 75 aa9.46□□□□□ -0.9
CLK3-223ENST00000568488 TPRXLQ17RH7 258 aa9.46□□□□□ -0.9
CLK3-223ENST00000568488 C10orf25Q5T742 122 aa9.46□□□□□ -0.9
CLK3-223ENST00000568488 IGLV7-46A0A075B6I9 117 aa9.45□□□□□ -0.9
CLK3-223ENST00000568488 C7orf77A4D0Y5 90 aa9.45□□□□□ -0.9
CLK3-223ENST00000568488 NDUFA1O15239 70 aa9.45□□□□□ -0.9
CLK3-223ENST00000568488 CRYGAP11844 174 aa9.45□□□□□ -0.9
CLK3-223ENST00000568488 OR10D4PQ8NGN7 298 aa9.45□□□□□ -0.9
CLK3-223ENST00000568488 ORAOV1Q8WV07 137 aa9.45□□□□□ -0.9
CLK3-223ENST00000568488 ST20Q9HBF5 79 aa9.45□□□□□ -0.9
CLK3-223ENST00000568488 CYTL1Q9NRR1 136 aa9.45□□□□□ -0.9
CLK3-223ENST00000568488 TRBV6-5A0A0K0K1A5 114 aa9.44□□□□□ -0.9
CLK3-223ENST00000568488 TLX1NBP0CAT3 122 aa9.44□□□□□ -0.9
CLK3-223ENST00000568488 TMEM241Q24JQ0 296 aa9.44□□□□□ -0.9
CLK3-223ENST00000568488 UNQ6190/PRO20217Q6UXQ8 127 aa9.44□□□□□ -0.9
CLK3-223ENST00000568488 CNFNQ9BYD5 112 aa9.44□□□□□ -0.9
CLK3-223ENST00000568488 RNASE7Q9H1E1 156 aaKnown RBP9.44□□□□□ -0.9
CLK3-223ENST00000568488 SRSF3P84103 164 aaKnown RBP9.43□□□□□ -0.9
CLK3-223ENST00000568488 NUDT10Q8NFP7 164 aa9.43□□□□□ -0.9
CLK3-223ENST00000568488 NUDT11Q96G61 164 aa9.43□□□□□ -0.9
CLK3-223ENST00000568488 SMDT1Q9H4I9 107 aa9.43□□□□□ -0.9
CLK3-223ENST00000568488 C6orf48Q9UBA6 75 aa9.43□□□□□ -0.9
CLK3-223ENST00000568488 F8WDY8 70 aa9.42□□□□□ -0.9
CLK3-223ENST00000568488 GIPP09681 153 aaPredicted RBP9.42□□□□□ -0.9
CLK3-223ENST00000568488 H2AFB1P0C5Y9 115 aa9.42□□□□□ -0.9
CLK3-223ENST00000568488 CCL20P78556 96 aa9.42□□□□□ -0.9
CLK3-223ENST00000568488 C11orf52Q96A22 123 aa9.42□□□□□ -0.9
CLK3-223ENST00000568488 GNG13Q9P2W3 67 aa9.42□□□□□ -0.9
CLK3-223ENST00000568488 LINC00173Q6ZV60 143 aa9.41□□□□□ -0.9
CLK3-223ENST00000568488 BIN3Q9NQY0 253 aa9.41□□□□□ -0.9
CLK3-223ENST00000568488 SMIM12Q96EX1 92 aa9.4□□□□□ -0.9
CLK3-223ENST00000568488 FAM210AQ96ND0 272 aa9.4□□□□□ -0.9
CLK3-223ENST00000568488 CTDSP1Q9GZU7 261 aa9.4□□□□□ -0.9
CLK3-223ENST00000568488 ANAPC11Q9NYG5 84 aa9.4□□□□□ -0.9
CLK3-223ENST00000568488 UMAD1C9J7I0 102 aa9.39□□□□□ -0.91
CLK3-223ENST00000568488 ARPC5O15511 151 aa9.39□□□□□ -0.91
CLK3-223ENST00000568488 FCER1GP30273 86 aa9.39□□□□□ -0.91
CLK3-223ENST00000568488 POLR2KP53803 58 aaKnown RBP9.39□□□□□ -0.91
CLK3-223ENST00000568488 SMAGPQ0VAQ4 97 aa9.39□□□□□ -0.91
CLK3-223ENST00000568488 Q6ZUT4 128 aa9.39□□□□□ -0.91
CLK3-223ENST00000568488 UBE2D4Q9Y2X8 147 aa9.39□□□□□ -0.91
CLK3-223ENST00000568488 CSDC2Q9Y534 153 aaKnown RBP9.39□□□□□ -0.91
CLK3-223ENST00000568488 NUPR1O60356 82 aa9.38□□□□□ -0.91
CLK3-223ENST00000568488 LINC00304Q8N9R0 145 aa9.38□□□□□ -0.91
CLK3-223ENST00000568488 MANBALQ9NQG1 85 aa9.38□□□□□ -0.91
CLK3-223ENST00000568488 C9orf129Q5T035 196 aaKnown RBP9.37□□□□□ -0.91
CLK3-223ENST00000568488 PPDPFQ9H3Y8 114 aa9.37□□□□□ -0.91
CLK3-223ENST00000568488 TRBV20OR9-2A0A075B6H5 130 aa9.36□□□□□ -0.91
CLK3-223ENST00000568488 TRBV27A0A0K0K1C4 114 aa9.36□□□□□ -0.91
CLK3-223ENST00000568488 RPL28P46779 137 aaKnown RBP9.36□□□□□ -0.91
CLK3-223ENST00000568488 MED9Q9NWA0 146 aa9.36□□□□□ -0.91
CLK3-223ENST00000568488 VCYO14598 125 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms