RNA–Protein interactions for RNA: ENST00000567320.1

CDH1-211, Transcript of cadherin 1, humanhuman

TSL 3

Gene CDH1, Length 352 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-211ENST00000567320 SIX6O95475 246 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 NCR2O95944 276 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 MT1AP04731 61 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 IL5P05113 134 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 FABP1P07148 127 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 CBLN1P23435 193 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 S100GP29377 79 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 CMPK1P30085 196 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 CCL8P80075 99 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 MRPS25P82663 173 aaKnown RBP-0.41□□□□□ -2.48
CDH1-211ENST00000567320 MORN2Q502X0 79 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 TMEM170BQ5T4T1 132 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 C10orf113Q5VZT2 155 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 RPL7L1Q6DKI1 246 aaKnown RBP-0.41□□□□□ -2.48
CDH1-211ENST00000567320 Q8N8P6 123 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 TMEM35BQ8NCS4 154 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 LSM10Q969L4 123 aaKnown RBP-0.41□□□□□ -2.48
CDH1-211ENST00000567320 SEC11CQ9BY50 192 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 ATPIF1Q9UII2 106 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 LENEPQ9Y5L5 61 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 R4GMQ9 66 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 MYH6P13533 1939 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 TNRC18O15417 2968 aaPredicted RBP-0.41□□□□□ -2.48
CDH1-211ENST00000567320 PPIP5K1Q6PFW1 1433 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 NINQ8N4C6 2090 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 CDK5RAP2Q96SN8 1893 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 POLA1P09884 1462 aaPredicted RBP-0.41□□□□□ -2.48
CDH1-211ENST00000567320 ZNF518AQ6AHZ1 1483 aa-0.41□□□□□ -2.48
CDH1-211ENST00000567320 TOP2BQ02880 1626 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 VPS13DQ5THJ4 4388 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 PLCE1Q9P212 2302 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 HECTD1Q9ULT8 2610 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 CUX1P39880 1505 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 EHBP1L1Q8N3D4 1523 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 KIAA0100Q14667 2235 aaKnown RBP-0.42□□□□□ -2.48
CDH1-211ENST00000567320 DNAH6Q9C0G6 4158 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 PSME4Q14997 1843 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 TRAV13-2A0A0B4J235 113 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 TRBV7-4A0A0J9YYF1 115 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 IGLC7A0M8Q6 106 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 E5RI56 91 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 F8VRH5 84 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 SYS1-DBNDD2H3BUS1 97 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 HMGN4O00479 90 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 UQCR11O14957 56 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 SPINK4O60575 86 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 YPEL1O60688 119 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 IFNA17P01571 189 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 NBEAP1P0C6P0 100 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 RPS28P62857 69 aaKnown RBP-0.42□□□□□ -2.48
CDH1-211ENST00000567320 HIST1H1AQ02539 215 aaPredicted RBP-0.42□□□□□ -2.48
CDH1-211ENST00000567320 COX17Q14061 63 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 ALX1Q15699 326 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 C10orf128Q5T292 105 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 BAGE2Q86Y30 109 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 TTC9CQ8N5M4 171 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 SMIM4Q8WVI0 70 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 SPTSSAQ969W0 71 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 LINC01600Q96MT4 127 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 SMIM3Q9BZL3 60 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 LINC01558Q9Y6Z2 57 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 OVOS2A0A0J9YW53 1432 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 FHAD1B1AJZ9 1412 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 OVOS2Q6IE36 1432 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 APOBP04114 4563 aaKnown RBP-0.42□□□□□ -2.48
CDH1-211ENST00000567320 BIRC6Q9NR09 4857 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 CUBNO60494 3623 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 ATRQ13535 2644 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 ADGRL2O95490 1459 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 PLEKHH2Q8IVE3 1493 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 MBD5Q9P267 1494 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 SHANK2Q9UPX8 1470 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 CICQ96RK0 1608 aaPredicted RBP-0.42□□□□□ -2.48
CDH1-211ENST00000567320 COL14A1Q05707 1796 aaKnown RBP-0.42□□□□□ -2.48
CDH1-211ENST00000567320 SCN11AQ9UI33 1791 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 MXRA5Q9NR99 2828 aa-0.42□□□□□ -2.48
CDH1-211ENST00000567320 ANK3Q12955 4377 aaKnown RBP-0.43□□□□□ -2.48
CDH1-211ENST00000567320 FOCADQ5VW36 1801 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 PRKDCP78527 4128 aaKnown RBP-0.43□□□□□ -2.48
CDH1-211ENST00000567320 PIEZO2Q9H5I5 2752 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 PKD1P98161 4303 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 A0A0G2JMZ2 1700 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 CEP152O94986 1710 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 KIAA1551Q9HCM1 1747 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 NF1P21359 2839 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 CPSF1Q10570 1443 aaKnown RBP-0.43□□□□□ -2.48
CDH1-211ENST00000567320 NCOA3Q9Y6Q9 1424 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 LOC100130705A0A1B0GUX0 176 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 CPSF4LA6NMK7 179 aaKnown RBP-0.43□□□□□ -2.48
CDH1-211ENST00000567320 H3BNG1 76 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 ARPC5O15511 151 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 SNCGO76070 127 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 NDUFB6O95139 128 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 SFT2D2O95562 160 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 TSPAN19P0C672 248 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 SMIM6P0DI80 62 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 PIPP12273 146 aaPredicted RBP-0.43□□□□□ -2.48
CDH1-211ENST00000567320 HIST1H1DP16402 221 aaKnown RBP-0.43□□□□□ -2.48
CDH1-211ENST00000567320 S100A3P33764 101 aa-0.43□□□□□ -2.48
CDH1-211ENST00000567320 NCS1P62166 190 aa-0.43□□□□□ -2.48
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms