RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 C18orf32Q8TCD1 76 aa6.49□□□□□ -1.37
CLK3-208ENST00000562626 DYNC1H1Q14204 4646 aaKnown RBP6.49□□□□□ -1.37
CLK3-208ENST00000562626 IGKV2D-24A0A075B6R9 120 aa6.48□□□□□ -1.37
CLK3-208ENST00000562626 TRAV8-3A0A0A6YYJ7 113 aa6.48□□□□□ -1.37
CLK3-208ENST00000562626 IGKV3OR2-268A0A0C4DH90 116 aa6.48□□□□□ -1.37
CLK3-208ENST00000562626 H7C423 109 aa6.48□□□□□ -1.37
CLK3-208ENST00000562626 BTF3P20290 206 aaKnown RBP6.48□□□□□ -1.37
CLK3-208ENST00000562626 KRTAP10-2P60368 255 aa6.48□□□□□ -1.37
CLK3-208ENST00000562626 PKIAP61925 76 aa6.48□□□□□ -1.37
CLK3-208ENST00000562626 AMMECR1LQ6DCA0 310 aa6.48□□□□□ -1.37
CLK3-208ENST00000562626 LINC00336Q6ZUF6 198 aa6.48□□□□□ -1.37
CLK3-208ENST00000562626 Q6ZUT4 128 aa6.48□□□□□ -1.37
CLK3-208ENST00000562626 CDC42SE2Q9NRR3 84 aa6.48□□□□□ -1.37
CLK3-208ENST00000562626 A0A087WTM6 91 aa6.47□□□□□ -1.37
CLK3-208ENST00000562626 LINC01546A6NGU7 62 aa6.47□□□□□ -1.37
CLK3-208ENST00000562626 LECT2O14960 151 aa6.47□□□□□ -1.37
CLK3-208ENST00000562626 CRPP02741 224 aa6.47□□□□□ -1.37
CLK3-208ENST00000562626 TRGC2P03986 189 aa6.47□□□□□ -1.37
CLK3-208ENST00000562626 ZC2HC1BQ5TFG8 222 aa6.47□□□□□ -1.37
CLK3-208ENST00000562626 NFE4Q86UQ8 179 aa6.47□□□□□ -1.37
CLK3-208ENST00000562626 A0A096LNJ9 63 aa6.46□□□□□ -1.38
CLK3-208ENST00000562626 ZNF25P17030 456 aaPredicted RBP6.46□□□□□ -1.38
CLK3-208ENST00000562626 RAB5AP20339 215 aa6.46□□□□□ -1.38
CLK3-208ENST00000562626 MIAQ16674 131 aa6.46□□□□□ -1.38
CLK3-208ENST00000562626 ZNF664Q8N3J9 261 aa6.46□□□□□ -1.38
CLK3-208ENST00000562626 OR5A1Q8NGJ0 315 aa6.46□□□□□ -1.38
CLK3-208ENST00000562626 BAALCQ8WXS3 180 aa6.46□□□□□ -1.38
CLK3-208ENST00000562626 NXT2Q9NPJ8 142 aaKnown RBP6.46□□□□□ -1.38
CLK3-208ENST00000562626 LINC00310P59036 64 aa6.45□□□□□ -1.38
CLK3-208ENST00000562626 Q0VG73 95 aa6.45□□□□□ -1.38
CLK3-208ENST00000562626 C2orf66Q6UXQ4 117 aa6.45□□□□□ -1.38
CLK3-208ENST00000562626 PRSS3P2Q8NHM4 247 aa6.45□□□□□ -1.38
CLK3-208ENST00000562626 TIMM21Q9BVV7 248 aa6.45□□□□□ -1.38
CLK3-208ENST00000562626 C1orf43Q9BWL3 253 aa6.45□□□□□ -1.38
CLK3-208ENST00000562626 IGLV4-3A0A075B6K6 122 aa6.44□□□□□ -1.38
CLK3-208ENST00000562626 LINC00959A0A1B0GUT2 108 aa6.44□□□□□ -1.38
CLK3-208ENST00000562626 PSCAO43653 123 aa6.44□□□□□ -1.38
CLK3-208ENST00000562626 PMCHL1Q16048 86 aa6.44□□□□□ -1.38
CLK3-208ENST00000562626 LINC00173Q6ZV60 143 aa6.44□□□□□ -1.38
CLK3-208ENST00000562626 SPATA12Q7Z6I5 190 aa6.44□□□□□ -1.38
CLK3-208ENST00000562626 TMEM101Q96IK0 257 aa6.44□□□□□ -1.38
CLK3-208ENST00000562626 CSDC2Q9Y534 153 aaKnown RBP6.44□□□□□ -1.38
CLK3-208ENST00000562626 GAGE12HA6NDE8 117 aa6.43□□□□□ -1.38
CLK3-208ENST00000562626 IGIPA6NJ69 53 aa6.43□□□□□ -1.38
CLK3-208ENST00000562626 ORMDL2Q53FV1 153 aa6.43□□□□□ -1.38
CLK3-208ENST00000562626 DGAT2L7PQ6IED9 249 aa6.43□□□□□ -1.38
CLK3-208ENST00000562626 NTN5Q8WTR8 489 aaPredicted RBP6.43□□□□□ -1.38
CLK3-208ENST00000562626 CHCHD10Q8WYQ3 142 aaPredicted RBP6.43□□□□□ -1.38
CLK3-208ENST00000562626 TM2D2Q9BX73 214 aa6.43□□□□□ -1.38
CLK3-208ENST00000562626 SPANXA1Q9NS26 97 aa6.43□□□□□ -1.38
CLK3-208ENST00000562626 CYSLTR1Q9Y271 337 aa6.43□□□□□ -1.38
CLK3-208ENST00000562626 TMA7Q9Y2S6 64 aaKnown RBP6.43□□□□□ -1.38
CLK3-208ENST00000562626 HERC1Q15751 4861 aa6.42□□□□□ -1.38
CLK3-208ENST00000562626 LOC105371267A0A1B0GV96 52 aa6.42□□□□□ -1.38
CLK3-208ENST00000562626 K7EMI3 77 aa6.42□□□□□ -1.38
CLK3-208ENST00000562626 CCL25O15444 150 aa6.42□□□□□ -1.38
CLK3-208ENST00000562626 MRPS36P82909 103 aaKnown RBP6.42□□□□□ -1.38
CLK3-208ENST00000562626 FOXI1Q12951 378 aa6.42□□□□□ -1.38
CLK3-208ENST00000562626 FA2HQ7L5A8 372 aa6.42□□□□□ -1.38
CLK3-208ENST00000562626 Q8N814 137 aa6.42□□□□□ -1.38
CLK3-208ENST00000562626 TMEM18Q96B42 140 aa6.42□□□□□ -1.38
CLK3-208ENST00000562626 TOMM6Q96B49 74 aa6.42□□□□□ -1.38
CLK3-208ENST00000562626 RMI2Q96E14 147 aa6.42□□□□□ -1.38
CLK3-208ENST00000562626 PYGO1Q9Y3Y4 419 aa6.42□□□□□ -1.38
CLK3-208ENST00000562626 TRAV13-1A0A0B4J241 112 aa6.41□□□□□ -1.38
CLK3-208ENST00000562626 TRAV8-4A0A0B4J246 113 aa6.41□□□□□ -1.38
CLK3-208ENST00000562626 USP17L23D6RBM5 183 aa6.41□□□□□ -1.38
CLK3-208ENST00000562626 NUPR1O60356 82 aa6.41□□□□□ -1.38
CLK3-208ENST00000562626 LINC00614P0C842 121 aa6.41□□□□□ -1.38
CLK3-208ENST00000562626 XCL1P47992 114 aa6.41□□□□□ -1.38
CLK3-208ENST00000562626 C15orf56Q8N910 161 aa6.41□□□□□ -1.38
CLK3-208ENST00000562626 LRP1BQ9NZR2 4599 aa6.41□□□□□ -1.38
CLK3-208ENST00000562626 DNAH8Q96JB1 4490 aa6.41□□□□□ -1.38
CLK3-208ENST00000562626 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.4□□□□□ -1.38
CLK3-208ENST00000562626 PRSS1P07477 247 aa6.4□□□□□ -1.38
CLK3-208ENST00000562626 TMEM141Q96I45 108 aa6.4□□□□□ -1.38
CLK3-208ENST00000562626 AMELXQ99217 191 aa6.4□□□□□ -1.38
CLK3-208ENST00000562626 AP5S1Q9NUS5 200 aa6.4□□□□□ -1.38
CLK3-208ENST00000562626 COX11Q9Y6N1 276 aa6.4□□□□□ -1.38
CLK3-208ENST00000562626 IFITM10A6NMD0 228 aa6.39□□□□□ -1.39
CLK3-208ENST00000562626 SLPIP03973 132 aa6.39□□□□□ -1.39
CLK3-208ENST00000562626 COX6A2Q02221 97 aa6.39□□□□□ -1.39
CLK3-208ENST00000562626 LINC01620Q4KN68 170 aa6.39□□□□□ -1.39
CLK3-208ENST00000562626 PDZD11Q5EBL8 140 aa6.39□□□□□ -1.39
CLK3-208ENST00000562626 TIMM17AQ99595 171 aa6.39□□□□□ -1.39
CLK3-208ENST00000562626 HIST1H2BKO60814 126 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 SERF1AO75920 110 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 HIST1H2BJP06899 126 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 HIST1H2BOP23527 126 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 HIST1H2BBP33778 126 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 UBE2D1P51668 147 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 HIST1H2BDP58876 126 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 KRTAP10-1P60331 282 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 HIST1H2BCP62807 126 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 SMAGPQ0VAQ4 97 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 SS18Q15532 418 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 HIST2H2BEQ16778 126 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.38□□□□□ -1.39
CLK3-208ENST00000562626 LINC00242Q5T6M2 205 aa6.38□□□□□ -1.39
CLK3-208ENST00000562626 FAM19A2Q8N3H0 131 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms