RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 IGLV10-54A0A075B6I4 117 aa11.02□□□□□ -0.65
CLK3-207ENST00000562389 LECT2O14960 151 aa11.02□□□□□ -0.65
CLK3-207ENST00000562389 MT-ND6P03923 174 aa11.02□□□□□ -0.65
CLK3-207ENST00000562389 SLC7A5P1Q8MH63 180 aa11.02□□□□□ -0.65
CLK3-207ENST00000562389 UBE2D4Q9Y2X8 147 aa11.02□□□□□ -0.65
CLK3-207ENST00000562389 FUSP35637 526 aaKnown RBP eCLIP11.01□□□□□ -0.65
CLK3-207ENST00000562389 TIMM21Q9BVV7 248 aa11.01□□□□□ -0.65
CLK3-207ENST00000562389 CDC42SE2Q9NRR3 84 aa11.01□□□□□ -0.65
CLK3-207ENST00000562389 IGKV3OR2-268A0A0C4DH90 116 aa11□□□□□ -0.65
CLK3-207ENST00000562389 LOC389332A0A1B0GUA5 103 aa11□□□□□ -0.65
CLK3-207ENST00000562389 RAB5AP20339 215 aa11□□□□□ -0.65
CLK3-207ENST00000562389 KIAA1644Q3SXP7 199 aa11□□□□□ -0.65
CLK3-207ENST00000562389 ZNF664Q8N3J9 261 aa11□□□□□ -0.65
CLK3-207ENST00000562389 Q8N8P6 123 aa11□□□□□ -0.65
CLK3-207ENST00000562389 IGLV5-52A0A0A0MRZ9 124 aa10.99□□□□□ -0.65
CLK3-207ENST00000562389 TGIF2-C20orf24A0A0A6YYL0 155 aa10.99□□□□□ -0.65
CLK3-207ENST00000562389 C14orf177Q52M58 125 aa10.99□□□□□ -0.65
CLK3-207ENST00000562389 DGAT2L7PQ6IED9 249 aa10.99□□□□□ -0.65
CLK3-207ENST00000562389 DNAH5Q8TE73 4624 aa10.98□□□□□ -0.65
CLK3-207ENST00000562389 K7EMI3 77 aa10.98□□□□□ -0.65
CLK3-207ENST00000562389 RPL39P62891 51 aaKnown RBP10.98□□□□□ -0.65
CLK3-207ENST00000562389 MRPL18Q9H0U6 180 aaKnown RBP10.98□□□□□ -0.65
CLK3-207ENST00000562389 NXT2Q9NPJ8 142 aaKnown RBP10.98□□□□□ -0.65
CLK3-207ENST00000562389 USP17L23D6RBM5 183 aa10.97□□□□□ -0.65
CLK3-207ENST00000562389 CHCHD10Q8WYQ3 142 aaPredicted RBP10.97□□□□□ -0.65
CLK3-207ENST00000562389 SPANXA1Q9NS26 97 aa10.97□□□□□ -0.65
CLK3-207ENST00000562389 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.96□□□□□ -0.65
CLK3-207ENST00000562389 LINC00959A0A1B0GUT2 108 aa10.96□□□□□ -0.65
CLK3-207ENST00000562389 GCSHP23434 173 aa10.96□□□□□ -0.65
CLK3-207ENST00000562389 Q6ZUT4 128 aa10.96□□□□□ -0.65
CLK3-207ENST00000562389 ALKBH7Q9BT30 221 aaPredicted RBP10.96□□□□□ -0.65
CLK3-207ENST00000562389 LRP1BQ9NZR2 4599 aa10.95□□□□□ -0.66
CLK3-207ENST00000562389 GAGE12HA6NDE8 117 aa10.95□□□□□ -0.66
CLK3-207ENST00000562389 IFI27P40305 119 aaPredicted RBP10.95□□□□□ -0.66
CLK3-207ENST00000562389 FABP9Q0Z7S8 132 aa10.95□□□□□ -0.66
CLK3-207ENST00000562389 ORMDL2Q53FV1 153 aa10.95□□□□□ -0.66
CLK3-207ENST00000562389 YPEL4Q96NS1 127 aa10.95□□□□□ -0.66
CLK3-207ENST00000562389 CDK2AP2O75956 126 aa10.94□□□□□ -0.66
CLK3-207ENST00000562389 MRPS36P82909 103 aaKnown RBP10.94□□□□□ -0.66
CLK3-207ENST00000562389 SS18Q15532 418 aa10.94□□□□□ -0.66
CLK3-207ENST00000562389 TRAPPC1Q9Y5R8 145 aa10.94□□□□□ -0.66
CLK3-207ENST00000562389 CCL25O15444 150 aa10.93□□□□□ -0.66
CLK3-207ENST00000562389 KRTAP10-1P60331 282 aa10.93□□□□□ -0.66
CLK3-207ENST00000562389 RNASE13Q5GAN3 156 aaKnown RBP10.93□□□□□ -0.66
CLK3-207ENST00000562389 FAM104AQ969W3 186 aa10.93□□□□□ -0.66
CLK3-207ENST00000562389 PYGO1Q9Y3Y4 419 aa10.93□□□□□ -0.66
CLK3-207ENST00000562389 PRSS1P07477 247 aa10.92□□□□□ -0.66
CLK3-207ENST00000562389 FOXI1Q12951 378 aa10.92□□□□□ -0.66
CLK3-207ENST00000562389 C2orf66Q6UXQ4 117 aa10.92□□□□□ -0.66
CLK3-207ENST00000562389 SMCO4Q9NRQ5 59 aa10.92□□□□□ -0.66
CLK3-207ENST00000562389 CYSLTR1Q9Y271 337 aa10.92□□□□□ -0.66
CLK3-207ENST00000562389 C1orf196B1AJZ1 125 aa10.91□□□□□ -0.66
CLK3-207ENST00000562389 XCL1P47992 114 aa10.91□□□□□ -0.66
CLK3-207ENST00000562389 CBLN2Q8IUK8 224 aa10.91□□□□□ -0.66
CLK3-207ENST00000562389 PRSS3P2Q8NHM4 247 aa10.91□□□□□ -0.66
CLK3-207ENST00000562389 HERC2O95714 4834 aa10.9□□□□□ -0.66
CLK3-207ENST00000562389 LINC01546A6NGU7 62 aa10.9□□□□□ -0.66
CLK3-207ENST00000562389 G0S2P27469 103 aa10.9□□□□□ -0.66
CLK3-207ENST00000562389 CFAP161Q6P656 301 aa10.9□□□□□ -0.66
CLK3-207ENST00000562389 CD164L2Q6UWJ8 174 aa10.9□□□□□ -0.66
CLK3-207ENST00000562389 OPRPNQ99935 248 aaPredicted RBP10.9□□□□□ -0.66
CLK3-207ENST00000562389 KRTAP17-1Q9BYP8 105 aa10.9□□□□□ -0.66
CLK3-207ENST00000562389 IGLV4-3A0A075B6K6 122 aa10.89□□□□□ -0.67
CLK3-207ENST00000562389 TRAV13-1A0A0B4J241 112 aa10.89□□□□□ -0.67
CLK3-207ENST00000562389 C15orf56Q8N910 161 aa10.89□□□□□ -0.67
CLK3-207ENST00000562389 hDV102S1A0JD36 115 aa10.88□□□□□ -0.67
CLK3-207ENST00000562389 NPSP0C0P6 89 aa10.88□□□□□ -0.67
CLK3-207ENST00000562389 TMEM141Q96I45 108 aa10.88□□□□□ -0.67
CLK3-207ENST00000562389 KIAA1109Q2LD37 5005 aa10.87□□□□□ -0.67
CLK3-207ENST00000562389 TOMM6Q96B49 74 aa10.87□□□□□ -0.67
CLK3-207ENST00000562389 IGIPA6NJ69 53 aa10.86□□□□□ -0.67
CLK3-207ENST00000562389 IFITM10A6NMD0 228 aa10.86□□□□□ -0.67
CLK3-207ENST00000562389 CNBPP62633 177 aaKnown RBP10.86□□□□□ -0.67
CLK3-207ENST00000562389 FA2HQ7L5A8 372 aa10.86□□□□□ -0.67
CLK3-207ENST00000562389 C18orf32Q8TCD1 76 aa10.86□□□□□ -0.67
CLK3-207ENST00000562389 GVQW2A0A096LPI5 108 aaPredicted RBP10.85□□□□□ -0.67
CLK3-207ENST00000562389 IGHV1-58A0A0C4DH39 117 aa10.85□□□□□ -0.67
CLK3-207ENST00000562389 LINC01549A6NIU2 74 aa10.85□□□□□ -0.67
CLK3-207ENST00000562389 TEX43Q6ZNM6 134 aa10.85□□□□□ -0.67
CLK3-207ENST00000562389 TIMM17AQ99595 171 aa10.85□□□□□ -0.67
CLK3-207ENST00000562389 AP5S1Q9NUS5 200 aa10.85□□□□□ -0.67
CLK3-207ENST00000562389 LINC01620Q4KN68 170 aa10.84□□□□□ -0.67
CLK3-207ENST00000562389 Q6ZN92 141 aa10.84□□□□□ -0.67
CLK3-207ENST00000562389 C9orf163Q8N9P6 203 aa10.84□□□□□ -0.67
CLK3-207ENST00000562389 AMELXQ99217 191 aa10.84□□□□□ -0.67
CLK3-207ENST00000562389 APOBP04114 4563 aaKnown RBP10.84□□□□□ -0.67
CLK3-207ENST00000562389 COX7A2LO14548 114 aa10.83□□□□□ -0.68
CLK3-207ENST00000562389 XGP55808 180 aa10.83□□□□□ -0.68
CLK3-207ENST00000562389 HIGD2BQ4VC39 106 aa10.83□□□□□ -0.68
CLK3-207ENST00000562389 Q6ZSA8 131 aa10.83□□□□□ -0.68
CLK3-207ENST00000562389 LINC00173Q6ZV60 143 aa10.83□□□□□ -0.68
CLK3-207ENST00000562389 C2orf88Q9BSF0 95 aa10.83□□□□□ -0.68
CLK3-207ENST00000562389 SLPIP03973 132 aa10.82□□□□□ -0.68
CLK3-207ENST00000562389 PAPPA-AS1Q5QFB9 102 aa10.82□□□□□ -0.68
CLK3-207ENST00000562389 ERASQ7Z444 233 aa10.82□□□□□ -0.68
CLK3-207ENST00000562389 URB1-AS1Q96HZ7 61 aa10.82□□□□□ -0.68
CLK3-207ENST00000562389 FAM30AQ9NZY2 134 aa10.82□□□□□ -0.68
CLK3-207ENST00000562389 RYR1P21817 5038 aa10.82□□□□□ -0.68
CLK3-207ENST00000562389 HSPG2P98160 4391 aa10.81□□□□□ -0.68
CLK3-207ENST00000562389 PCLOQ9Y6V0 5065 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms