RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 ASPMQ8IZT6 3477 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 DCHS1Q96JQ0 3298 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 CFAP54Q96N23 3096 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 DSPP15924 2871 aaKnown RBP0.19□□□□□ -2.38
USP3-209ENST00000558925 KDM5AP29375 1690 aaKnown RBP0.19□□□□□ -2.38
USP3-209ENST00000558925 CUL7Q14999 1698 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 BCL9LQ86UU0 1499 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 FAM92AA1XBS5 289 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 OOSP1A8MZH6 123 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 HCG22E2RYF7 251 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 F6UZH7 168 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 CORTO00230 105 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 IFNA17P01571 189 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 APODP05090 189 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 INSL4Q14641 139 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 Q6ZRX8 168 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 VMO1Q7Z5L0 202 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 Q8N8P6 123 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 SMIM11BQ8TCY0 68 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 C1orf54Q8WWF1 131 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 PP6455Q8WZ26 134 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 C14orf144Q96I85 54 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 CGREF1Q99674 301 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 WFDC6Q9BQY6 131 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 PRR15LQ9BU68 103 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 SNRNP25Q9BV90 132 aaKnown RBP0.19□□□□□ -2.38
USP3-209ENST00000558925 BPESC1Q9GZL8 116 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 RERGLQ9H628 205 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 LINC00474Q9P2X8 69 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 GNG8Q9UK08 70 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 NF1P21359 2839 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 PSME4Q14997 1843 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 MYOM3Q5VTT5 1437 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 OTOGQ6ZRI0 2925 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 LRBAP50851 2863 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 CENPFP49454 3210 aa0.19□□□□□ -2.38
USP3-209ENST00000558925 ARAP2Q8WZ64 1704 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 COL7A1Q02388 2944 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 BRCA2P51587 3418 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 PRRC2CQ9Y520 2896 aaKnown RBP0.18□□□□□ -2.38
USP3-209ENST00000558925 CFTRP13569 1480 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 ZNF518AQ6AHZ1 1483 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 FRYLO94915 3013 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 MAP1AP78559 2803 aaPredicted RBP0.18□□□□□ -2.38
USP3-209ENST00000558925 RAPGEF6Q8TEU7 1601 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 TRBV10-3A0A0K0K1G6 114 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 MIF4GDA9UHW6 222 aaKnown RBP0.18□□□□□ -2.38
USP3-209ENST00000558925 PHGR1C9JFL3 82 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 MCRIP1C9JLW8 97 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 APOC4-APOC2K7ER74 178 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 SNAPC5O75971 98 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 IFNGP01579 166 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 NMBP08949 121 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 AKAIN1P0CW23 69 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 FGF7P21781 194 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 S100A1P23297 94 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 BTG2P78543 158 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 CATR1Q13166 79 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 Q56UQ5 140 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 Q6AWC8 147 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 ZNF818PQ6ZRF7 136 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 TSLPQ969D9 159 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 C12orf57Q99622 126 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 SERP1Q9Y6X1 66 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 AHCTF1Q8WYP5 2266 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 CASKIN1Q8WXD9 1431 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 RNF213Q63HN8 5207 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 SPTBN1Q01082 2364 aaKnown RBP0.18□□□□□ -2.38
USP3-209ENST00000558925 SPTBN5Q9NRC6 3674 aaKnown RBP0.18□□□□□ -2.38
USP3-209ENST00000558925 ZMYM4Q5VZL5 1548 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 CSPG4Q6UVK1 2322 aa0.18□□□□□ -2.38
USP3-209ENST00000558925 DOCK2Q92608 1830 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 ZNF236Q9UL36 1845 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 HERC2O95714 4834 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 A2ML1A8K2U0 1454 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 MYOM2P54296 1465 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 MUC3AQ02505 3323 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 HTTP42858 3142 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 TRAV13-2A0A0B4J235 113 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 TRAV1-2A0A0B4J238 106 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 TMEM14DPA8MWL7 114 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 G3V318 75 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 SIX6O95475 246 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 APC2O95996 2303 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 S100PP25815 95 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 RBP2P50120 134 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 GNG4P50150 75 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 TPPP2P59282 170 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 PPP3R1P63098 170 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 CCL8P80075 99 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 NCMAPQ5T1S8 102 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 C9orf153Q5TBE3 101 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 MRPL54Q6P161 138 aaKnown RBP0.17□□□□□ -2.38
USP3-209ENST00000558925 SPINK6Q6UWN8 80 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 SMG6Q86US8 1419 aaKnown RBP0.17□□□□□ -2.38
USP3-209ENST00000558925 DEFB123Q8N688 67 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 TMEM203Q969S6 136 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 DPH3P1Q9H4G8 78 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 NAA60Q9H7X0 242 aa0.17□□□□□ -2.38
USP3-209ENST00000558925 PTPRQQ9UMZ3 2332 aa0.17□□□□□ -2.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms