RNA–Protein interactions for RNA: ENST00000558561.1

SPG11-211, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 555 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-211ENST00000558561 IGLV4-60A0A075B6I1 120 aa2.76□□□□□ -1.97
SPG11-211ENST00000558561 TRAV8-6A0A0B4J262 113 aa2.76□□□□□ -1.97
SPG11-211ENST00000558561 FAM231BA6NCW3 169 aa2.76□□□□□ -1.97
SPG11-211ENST00000558561 ZNF727A8MUV8 499 aa2.76□□□□□ -1.97
SPG11-211ENST00000558561 TMEM262E9PQX1 116 aa2.76□□□□□ -1.97
SPG11-211ENST00000558561 CXCL1P09341 107 aa2.76□□□□□ -1.97
SPG11-211ENST00000558561 RPS10P46783 165 aaKnown RBP2.76□□□□□ -1.97
SPG11-211ENST00000558561 MPV17L2Q567V2 206 aa2.76□□□□□ -1.97
SPG11-211ENST00000558561 CLPSL2Q6UWE3 100 aa2.76□□□□□ -1.97
SPG11-211ENST00000558561 SMIM7Q9BQ49 75 aa2.76□□□□□ -1.97
SPG11-211ENST00000558561 RPP21Q9H633 154 aaKnown RBP2.76□□□□□ -1.97
SPG11-211ENST00000558561 V9GYV3 84 aa2.76□□□□□ -1.97
SPG11-211ENST00000558561 ABCA13Q86UQ4 5058 aa2.76□□□□□ -1.97
SPG11-211ENST00000558561 VPS13BQ7Z7G8 4022 aa2.76□□□□□ -1.97
SPG11-211ENST00000558561 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.75□□□□□ -1.97
SPG11-211ENST00000558561 TRBV6-8A0A0A6YYG3 113 aa2.75□□□□□ -1.97
SPG11-211ENST00000558561 TMEM250H0YL14 139 aa2.75□□□□□ -1.97
SPG11-211ENST00000558561 RAB4AP20338 218 aa2.75□□□□□ -1.97
SPG11-211ENST00000558561 CTRLP40313 264 aa2.75□□□□□ -1.97
SPG11-211ENST00000558561 TMEM241Q24JQ0 296 aa2.75□□□□□ -1.97
SPG11-211ENST00000558561 Q6ZVQ6 151 aa2.75□□□□□ -1.97
SPG11-211ENST00000558561 FAM231DQ6ZW35 169 aa2.75□□□□□ -1.97
SPG11-211ENST00000558561 Q8N377 158 aa2.75□□□□□ -1.97
SPG11-211ENST00000558561 C15orf54Q8N8G6 183 aa2.75□□□□□ -1.97
SPG11-211ENST00000558561 C20orf203Q8NBC4 194 aa2.75□□□□□ -1.97
SPG11-211ENST00000558561 NUP35Q8NFH5 326 aa2.75□□□□□ -1.97
SPG11-211ENST00000558561 ISOC2Q96AB3 205 aa2.75□□□□□ -1.97
SPG11-211ENST00000558561 UBE2WQ96B02 151 aa2.75□□□□□ -1.97
SPG11-211ENST00000558561 IGLV10-54A0A075B6I4 117 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 IGKV2D-24A0A075B6R9 120 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.74□□□□□ -1.97
SPG11-211ENST00000558561 TRAV9-2A0A087WT02 112 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 TRBV10-1A0A0K0K1A3 114 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 IGKV2-29A2NJV5 120 aaPredicted RBP2.74□□□□□ -1.97
SPG11-211ENST00000558561 HIGD1CA8MV81 97 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 PANO1I0J062 215 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 NCR2O95944 276 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 DSCR10P59022 87 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 RPS20P60866 119 aaKnown RBP2.74□□□□□ -1.97
SPG11-211ENST00000558561 RBX1P62877 108 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 CACNG7P62955 275 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 TTC32Q5I0X7 151 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 RASL11AQ6T310 242 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 SH2D6Q7Z4S9 175 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 AMN1Q8IY45 258 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 LINC00269Q8N2A0 174 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 CHCHD5Q9BSY4 110 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 CNFNQ9BYD5 112 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 DPH3P1Q9H4G8 78 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 RPS10P5Q9NQ39 176 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 NIT2Q9NQR4 276 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 OSTCQ9NRP0 149 aa2.74□□□□□ -1.97
SPG11-211ENST00000558561 IGKV3OR2-268A0A0C4DH90 116 aa2.73□□□□□ -1.97
SPG11-211ENST00000558561 A4D1N5 150 aa2.73□□□□□ -1.97
SPG11-211ENST00000558561 A8MWL6 223 aa2.73□□□□□ -1.97
SPG11-211ENST00000558561 F2Z2F3 143 aa2.73□□□□□ -1.97
SPG11-211ENST00000558561 PSCAO43653 123 aa2.73□□□□□ -1.97
SPG11-211ENST00000558561 ANGP03950 147 aaKnown RBP2.73□□□□□ -1.97
SPG11-211ENST00000558561 SMIM17P0DL12 118 aa2.73□□□□□ -1.97
SPG11-211ENST00000558561 POLR2KP53803 58 aaKnown RBP2.73□□□□□ -1.97
SPG11-211ENST00000558561 ADIRFQ15847 76 aa2.73□□□□□ -1.97
SPG11-211ENST00000558561 MRPL51Q4U2R6 128 aaKnown RBP2.73□□□□□ -1.97
SPG11-211ENST00000558561 Q8N814 137 aa2.73□□□□□ -1.97
SPG11-211ENST00000558561 TSKUQ8WUA8 353 aa2.73□□□□□ -1.97
SPG11-211ENST00000558561 FAM104AQ969W3 186 aa2.73□□□□□ -1.97
SPG11-211ENST00000558561 SMIM12Q96EX1 92 aa2.73□□□□□ -1.97
SPG11-211ENST00000558561 LINC00526Q96FQ7 95 aa2.73□□□□□ -1.97
SPG11-211ENST00000558561 AP1S3Q96PC3 154 aa2.73□□□□□ -1.97
SPG11-211ENST00000558561 CHCHD7Q9BUK0 85 aa2.73□□□□□ -1.97
SPG11-211ENST00000558561 FLG2Q5D862 2391 aaPredicted RBP2.72□□□□□ -1.97
SPG11-211ENST00000558561 IGLV4-3A0A075B6K6 122 aa2.72□□□□□ -1.97
SPG11-211ENST00000558561 A0A087WWC5 75 aa2.72□□□□□ -1.97
SPG11-211ENST00000558561 A0A087WX48 190 aa2.72□□□□□ -1.97
SPG11-211ENST00000558561 A0A1B0GUT8 65 aa2.72□□□□□ -1.97
SPG11-211ENST00000558561 SMIM27A0A1W2PRY6 76 aa2.72□□□□□ -1.97
SPG11-211ENST00000558561 ADCYAP1P18509 176 aa2.72□□□□□ -1.97
SPG11-211ENST00000558561 TAGLN2P37802 199 aaKnown RBP2.72□□□□□ -1.97
SPG11-211ENST00000558561 NDUFV3P56181 108 aaKnown RBP2.72□□□□□ -1.97
SPG11-211ENST00000558561 KRTAP10-5P60370 271 aa2.72□□□□□ -1.97
SPG11-211ENST00000558561 PEA15Q15121 130 aa2.72□□□□□ -1.97
SPG11-211ENST00000558561 IQCJQ1A5X6 159 aa2.72□□□□□ -1.97
SPG11-211ENST00000558561 RNASE13Q5GAN3 156 aaKnown RBP2.72□□□□□ -1.97
SPG11-211ENST00000558561 MRPL54Q6P161 138 aaKnown RBP2.72□□□□□ -1.97
SPG11-211ENST00000558561 PRR34Q9NV39 138 aa2.72□□□□□ -1.97
SPG11-211ENST00000558561 TMEM242Q9NWH2 141 aa2.72□□□□□ -1.97
SPG11-211ENST00000558561 NAT8Q9UHE5 227 aa2.72□□□□□ -1.97
SPG11-211ENST00000558561 TRAV8-3A0A0A6YYJ7 113 aa2.71□□□□□ -1.98
SPG11-211ENST00000558561 IGHV1-24A0A0C4DH33 117 aa2.71□□□□□ -1.98
SPG11-211ENST00000558561 XKRY2A2RUG3 117 aa2.71□□□□□ -1.98
SPG11-211ENST00000558561 SDHAF1A6NFY7 115 aa2.71□□□□□ -1.98
SPG11-211ENST00000558561 TRGC1P0CF51 173 aa2.71□□□□□ -1.98
SPG11-211ENST00000558561 ESDP10768 282 aa2.71□□□□□ -1.98
SPG11-211ENST00000558561 PMCHP20382 165 aa2.71□□□□□ -1.98
SPG11-211ENST00000558561 REG3AQ06141 175 aa2.71□□□□□ -1.98
SPG11-211ENST00000558561 FAM74A3Q4VXF1 159 aa2.71□□□□□ -1.98
SPG11-211ENST00000558561 FAM104BQ5XKR9 115 aa2.71□□□□□ -1.98
SPG11-211ENST00000558561 C10orf126Q8N4M7 172 aa2.71□□□□□ -1.98
SPG11-211ENST00000558561 TMEM70Q9BUB7 260 aa2.71□□□□□ -1.98
SPG11-211ENST00000558561 TMEM191AQ9H0A3 160 aa2.71□□□□□ -1.98
SPG11-211ENST00000558561 BIN3Q9NQY0 253 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 267.5 ms