RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 Q9H8V8 135 aa9.93□□□□□ -0.82
SHMT2-226ENST00000556825 ORMDL1Q9P0S3 153 aa9.93□□□□□ -0.82
SHMT2-226ENST00000556825 POLEQ07864 2286 aa9.93□□□□□ -0.82
SHMT2-226ENST00000556825 CADP27708 2225 aa9.93□□□□□ -0.82
SHMT2-226ENST00000556825 ZNF292O60281 2723 aa9.93□□□□□ -0.82
SHMT2-226ENST00000556825 A0A087WZ39 114 aa9.92□□□□□ -0.82
SHMT2-226ENST00000556825 IGHV3-35A0A0C4DH35 117 aa9.92□□□□□ -0.82
SHMT2-226ENST00000556825 IGKV2-29A2NJV5 120 aaPredicted RBP9.92□□□□□ -0.82
SHMT2-226ENST00000556825 JMJD7-PLA2G4BH0Y9G9 81 aa9.92□□□□□ -0.82
SHMT2-226ENST00000556825 Q9UF83 564 aa9.92□□□□□ -0.82
SHMT2-226ENST00000556825 IGLV3-9A0A075B6K5 115 aa9.91□□□□□ -0.82
SHMT2-226ENST00000556825 CCDC140Q96MF4 163 aa9.91□□□□□ -0.82
SHMT2-226ENST00000556825 ZFHX2Q9C0A1 2572 aaPredicted RBP9.91□□□□□ -0.82
SHMT2-226ENST00000556825 ZFHX4Q86UP3 3567 aa9.91□□□□□ -0.82
SHMT2-226ENST00000556825 F6UB75 175 aa9.91□□□□□ -0.82
SHMT2-226ENST00000556825 LECT2O14960 151 aa9.91□□□□□ -0.82
SHMT2-226ENST00000556825 NDUFB3O43676 98 aa9.91□□□□□ -0.82
SHMT2-226ENST00000556825 IGLV1-47P01700 117 aa9.91□□□□□ -0.82
SHMT2-226ENST00000556825 CRPP02741 224 aa9.91□□□□□ -0.82
SHMT2-226ENST00000556825 Q1T7F1 81 aa9.9□□□□□ -0.82
SHMT2-226ENST00000556825 C11orf72Q8NBR9 251 aa9.9□□□□□ -0.82
SHMT2-226ENST00000556825 ITLN2Q8WWU7 325 aaPredicted RBP9.9□□□□□ -0.82
SHMT2-226ENST00000556825 RNASE13Q5GAN3 156 aaKnown RBP9.9□□□□□ -0.83
SHMT2-226ENST00000556825 DYNLRB2Q8TF09 96 aa9.9□□□□□ -0.83
SHMT2-226ENST00000556825 PRRC2CQ9Y520 2896 aaKnown RBP9.9□□□□□ -0.83
SHMT2-226ENST00000556825 DMXL1Q9Y485 3027 aa9.89□□□□□ -0.83
SHMT2-226ENST00000556825 FAM74A4Q5TZK3 123 aa9.89□□□□□ -0.83
SHMT2-226ENST00000556825 SMIM11BQ8TCY0 68 aa9.89□□□□□ -0.83
SHMT2-226ENST00000556825 CDKN2A-AS1Q9UH64 79 aa9.89□□□□□ -0.83
SHMT2-226ENST00000556825 MUC4Q99102 2169 aa9.89□□□□□ -0.83
SHMT2-226ENST00000556825 IGLV5-45A0A087WSX0 123 aa9.88□□□□□ -0.83
SHMT2-226ENST00000556825 IGHV3OR16-13A0A075B7E8 117 aa9.88□□□□□ -0.83
SHMT2-226ENST00000556825 IGHV3-74A0A0B4J1X5 117 aa9.88□□□□□ -0.83
SHMT2-226ENST00000556825 CNEP1R1Q8N9A8 125 aa9.88□□□□□ -0.83
SHMT2-226ENST00000556825 IGLV5-39A0A0G2JS06 123 aa9.87□□□□□ -0.83
SHMT2-226ENST00000556825 ERC2-IT1O76042 136 aa9.87□□□□□ -0.83
SHMT2-226ENST00000556825 Q6ZTC4 211 aa9.87□□□□□ -0.83
SHMT2-226ENST00000556825 LINC00337Q8N6G1 96 aa9.87□□□□□ -0.83
SHMT2-226ENST00000556825 TMEM254Q8TBM7 123 aa9.87□□□□□ -0.83
SHMT2-226ENST00000556825 E7EQL1 145 aa9.87□□□□□ -0.83
SHMT2-226ENST00000556825 SLPIP03973 132 aa9.87□□□□□ -0.83
SHMT2-226ENST00000556825 KTN1-AS1Q86SY8 53 aa9.87□□□□□ -0.83
SHMT2-226ENST00000556825 C11orf45Q8TAV5 145 aa9.87□□□□□ -0.83
SHMT2-226ENST00000556825 PTPRZ1P23471 2315 aaPredicted RBP9.87□□□□□ -0.83
SHMT2-226ENST00000556825 C9orf106Q8NAJ2 232 aa9.86□□□□□ -0.83
SHMT2-226ENST00000556825 C11orf68Q9H3H3 251 aaKnown RBP9.86□□□□□ -0.83
SHMT2-226ENST00000556825 CEP250Q9BV73 2442 aa9.86□□□□□ -0.83
SHMT2-226ENST00000556825 CACNA1BQ00975 2339 aa9.86□□□□□ -0.83
SHMT2-226ENST00000556825 FUSP35637 526 aaKnown RBP eCLIP9.86□□□□□ -0.83
SHMT2-226ENST00000556825 LYPD2Q6UXB3 125 aa9.86□□□□□ -0.83
SHMT2-226ENST00000556825 LINC01547P58512 204 aaPredicted RBP9.85□□□□□ -0.83
SHMT2-226ENST00000556825 RPL36AP83881 106 aaKnown RBP9.85□□□□□ -0.83
SHMT2-226ENST00000556825 NPBQ8NG41 125 aa9.85□□□□□ -0.83
SHMT2-226ENST00000556825 RPL36ALQ969Q0 106 aaKnown RBP9.85□□□□□ -0.83
SHMT2-226ENST00000556825 CFAP47Q6ZTR5 3102 aa9.85□□□□□ -0.83
SHMT2-226ENST00000556825 IGFL3Q6UXB1 125 aa9.84□□□□□ -0.83
SHMT2-226ENST00000556825 GVINP1Q7Z2Y8 2422 aa9.84□□□□□ -0.83
SHMT2-226ENST00000556825 IGKV2-28A0A075B6P5 120 aa9.84□□□□□ -0.83
SHMT2-226ENST00000556825 IGKV2D-28P01615 120 aa9.84□□□□□ -0.83
SHMT2-226ENST00000556825 IGHV3-49A0A0A0MS15 119 aa9.83□□□□□ -0.84
SHMT2-226ENST00000556825 M0R1B8 84 aa9.83□□□□□ -0.84
SHMT2-226ENST00000556825 UBE2E2Q96LR5 201 aa9.83□□□□□ -0.84
SHMT2-226ENST00000556825 DSPP15924 2871 aaKnown RBP9.83□□□□□ -0.84
SHMT2-226ENST00000556825 SPTBN4Q9H254 2564 aa9.83□□□□□ -0.84
SHMT2-226ENST00000556825 NREPQ16612 68 aa9.82□□□□□ -0.84
SHMT2-226ENST00000556825 Q6ZRP5 223 aa9.82□□□□□ -0.84
SHMT2-226ENST00000556825 LINC00167Q96N53 147 aa9.82□□□□□ -0.84
SHMT2-226ENST00000556825 CACNA1GO43497 2377 aa9.82□□□□□ -0.84
SHMT2-226ENST00000556825 PRB3Q04118 309 aaPredicted RBP9.82□□□□□ -0.84
SHMT2-226ENST00000556825 IGHV1OR15-1A0A075B7D0 117 aa9.81□□□□□ -0.84
SHMT2-226ENST00000556825 PRYO14603 147 aa9.81□□□□□ -0.84
SHMT2-226ENST00000556825 IGHV3-38A0A0C4DH36 116 aa9.8□□□□□ -0.84
SHMT2-226ENST00000556825 hDV103S1A0JD37 113 aa9.8□□□□□ -0.84
SHMT2-226ENST00000556825 APOC4P55056 127 aa9.8□□□□□ -0.84
SHMT2-226ENST00000556825 CXCL6P80162 114 aa9.8□□□□□ -0.84
SHMT2-226ENST00000556825 Q6ZTI0 123 aa9.8□□□□□ -0.84
SHMT2-226ENST00000556825 Q8N3U1 123 aa9.8□□□□□ -0.84
SHMT2-226ENST00000556825 LINC00588Q9Y4M8 146 aa9.8□□□□□ -0.84
SHMT2-226ENST00000556825 SND1-IT1Q9HBX3 110 aa9.8□□□□□ -0.84
SHMT2-226ENST00000556825 COX6A2Q02221 97 aa9.79□□□□□ -0.84
SHMT2-226ENST00000556825 SEM1Q6ZVN7 128 aa9.79□□□□□ -0.84
SHMT2-226ENST00000556825 AKAP13Q12802 2813 aa9.79□□□□□ -0.84
SHMT2-226ENST00000556825 TMEM256-PLSCR3K7ERE1 68 aa9.79□□□□□ -0.84
SHMT2-226ENST00000556825 M0R378 163 aa9.79□□□□□ -0.84
SHMT2-226ENST00000556825 HAMPP81172 84 aa9.79□□□□□ -0.84
SHMT2-226ENST00000556825 BBC3Q96PG8 261 aaPredicted RBP9.79□□□□□ -0.84
SHMT2-226ENST00000556825 KMT2BQ9UMN6 2715 aaPredicted RBP9.79□□□□□ -0.84
SHMT2-226ENST00000556825 COX7A1P24310 79 aa9.78□□□□□ -0.84
SHMT2-226ENST00000556825 DEFB1P60022 68 aa9.78□□□□□ -0.84
SHMT2-226ENST00000556825 CLEC19AQ6UXS0 136 aa9.78□□□□□ -0.84
SHMT2-226ENST00000556825 CHCHD7Q9BUK0 85 aa9.78□□□□□ -0.84
SHMT2-226ENST00000556825 LAMA5O15230 3695 aa9.78□□□□□ -0.84
SHMT2-226ENST00000556825 SPTBN2O15020 2390 aa9.77□□□□□ -0.84
SHMT2-226ENST00000556825 KLLNB2CW77 178 aa9.77□□□□□ -0.85
SHMT2-226ENST00000556825 SMIM1B2RUZ4 78 aa9.77□□□□□ -0.85
SHMT2-226ENST00000556825 KAAG1Q9UBP8 84 aa9.77□□□□□ -0.85
SHMT2-226ENST00000556825 BOD1L1Q8NFC6 3051 aa9.77□□□□□ -0.85
SHMT2-226ENST00000556825 IGHV3-16A0A0C4DH30 117 aa9.76□□□□□ -0.85
SHMT2-226ENST00000556825 LYRM9A8MSI8 78 aa9.76□□□□□ -0.85
SHMT2-226ENST00000556825 Q8N6K4 173 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms