RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	TCEAL7	Q9BRU2	100 aa		5.19	□□□□□ -1.58
SYNE2-222	ENST00000556725	PKIG	Q9Y2B9	76 aa		5.19	□□□□□ -1.58
SYNE2-222	ENST00000556725	BORCS7-ASMT	A0A0B4J1R7	106 aa		5.18	□□□□□ -1.58
SYNE2-222	ENST00000556725	KRTAP23-1	A1A580	65 aa		5.18	□□□□□ -1.58
SYNE2-222	ENST00000556725		H0Y9J4	135 aa		5.18	□□□□□ -1.58
SYNE2-222	ENST00000556725	KRTAP1-4	P0C5Y4	121 aa		5.18	□□□□□ -1.58
SYNE2-222	ENST00000556725	TMUB2	Q71RG4	321 aa		5.18	□□□□□ -1.58
SYNE2-222	ENST00000556725	GATD1	Q8NB37	220 aa		5.18	□□□□□ -1.58
SYNE2-222	ENST00000556725	IGLV4-69	A0A075B6H9	119 aa		5.17	□□□□□ -1.58
SYNE2-222	ENST00000556725	IGLV1-50	A0A075B6I6	118 aa		5.17	□□□□□ -1.58
SYNE2-222	ENST00000556725		A0A1B0GV50	99 aa		5.17	□□□□□ -1.58
SYNE2-222	ENST00000556725	CAMP	P49913	170 aa		5.17	□□□□□ -1.58
SYNE2-222	ENST00000556725	LYZL1	Q6UWQ5	148 aa		5.17	□□□□□ -1.58
SYNE2-222	ENST00000556725	NUP35	Q8NFH5	326 aa		5.17	□□□□□ -1.58
SYNE2-222	ENST00000556725	OR2D3	Q8NGH3	330 aa		5.17	□□□□□ -1.58
SYNE2-222	ENST00000556725	RPL39L	Q96EH5	51 aa	Known RBP	5.17	□□□□□ -1.58
SYNE2-222	ENST00000556725	MED28	Q9H204	178 aa		5.17	□□□□□ -1.58
SYNE2-222	ENST00000556725	ALG5	Q9Y673	324 aa		5.17	□□□□□ -1.58
SYNE2-222	ENST00000556725	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE2-222	ENST00000556725	PFDN1	O60925	122 aa		5.16	□□□□□ -1.58
SYNE2-222	ENST00000556725	MAL	P21145	153 aa		5.16	□□□□□ -1.58
SYNE2-222	ENST00000556725	RPL35	P42766	123 aa	Known RBP	5.16	□□□□□ -1.58
SYNE2-222	ENST00000556725	MEF2B	Q02080	365 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE2-222	ENST00000556725	OPRPN	Q99935	248 aa	Predicted RBP	5.16	□□□□□ -1.58
SYNE2-222	ENST00000556725	CYTL1	Q9NRR1	136 aa		5.16	□□□□□ -1.58
SYNE2-222	ENST00000556725	MUC17	Q685J3	4493 aa		5.16	□□□□□ -1.58
SYNE2-222	ENST00000556725		A0A087WZ39	114 aa		5.15	□□□□□ -1.59
SYNE2-222	ENST00000556725	FXYD6-FXYD2	A0A087WZ82	144 aa		5.15	□□□□□ -1.59
SYNE2-222	ENST00000556725		A0A1B0GVG6	124 aa		5.15	□□□□□ -1.59
SYNE2-222	ENST00000556725	C19orf71	A6NCJ1	209 aa		5.15	□□□□□ -1.59
SYNE2-222	ENST00000556725		H7C423	109 aa		5.15	□□□□□ -1.59
SYNE2-222	ENST00000556725	TSPAN13	O95857	204 aa		5.15	□□□□□ -1.59
SYNE2-222	ENST00000556725	APCS	P02743	223 aa		5.15	□□□□□ -1.59
SYNE2-222	ENST00000556725	TRGC1	P0CF51	173 aa		5.15	□□□□□ -1.59
SYNE2-222	ENST00000556725	RPS20	P60866	119 aa	Known RBP	5.15	□□□□□ -1.59
SYNE2-222	ENST00000556725	RPL18A	Q02543	176 aa	Known RBP	5.15	□□□□□ -1.59
SYNE2-222	ENST00000556725	CD164L2	Q6UWJ8	174 aa		5.15	□□□□□ -1.59
SYNE2-222	ENST00000556725	SFT2D1	Q8WV19	159 aa		5.15	□□□□□ -1.59
SYNE2-222	ENST00000556725	FAM168B	A1KXE4	195 aa		5.14	□□□□□ -1.59
SYNE2-222	ENST00000556725		F2Z2F3	143 aa		5.14	□□□□□ -1.59
SYNE2-222	ENST00000556725	APOM	O95445	188 aa		5.14	□□□□□ -1.59
SYNE2-222	ENST00000556725	NCR2	O95944	276 aa		5.14	□□□□□ -1.59
SYNE2-222	ENST00000556725	FOXA3	P55318	350 aa	Predicted RBP	5.14	□□□□□ -1.59
SYNE2-222	ENST00000556725	EIF5A	P63241	154 aa	Known RBP	5.14	□□□□□ -1.59
SYNE2-222	ENST00000556725	SS18	Q15532	418 aa		5.14	□□□□□ -1.59
SYNE2-222	ENST00000556725	MBD3L1	Q8WWY6	194 aa		5.14	□□□□□ -1.59
SYNE2-222	ENST00000556725	ISOC2	Q96AB3	205 aa		5.14	□□□□□ -1.59
SYNE2-222	ENST00000556725	CAMK2N2	Q96S95	79 aa		5.14	□□□□□ -1.59
SYNE2-222	ENST00000556725	RAB19	A4D1S5	217 aa		5.13	□□□□□ -1.59
SYNE2-222	ENST00000556725	SDHAF1	A6NFY7	115 aa		5.13	□□□□□ -1.59
SYNE2-222	ENST00000556725	BCL2L11	O43521	198 aa		5.13	□□□□□ -1.59
SYNE2-222	ENST00000556725	IFNA1	P01562	189 aa		5.13	□□□□□ -1.59
SYNE2-222	ENST00000556725	ESD	P10768	282 aa		5.13	□□□□□ -1.59
SYNE2-222	ENST00000556725	ZNF25	P17030	456 aa	Predicted RBP	5.13	□□□□□ -1.59
SYNE2-222	ENST00000556725	UBE2D1	P51668	147 aa		5.13	□□□□□ -1.59
SYNE2-222	ENST00000556725	TWIST1	Q15672	202 aa		5.13	□□□□□ -1.59
SYNE2-222	ENST00000556725	C9orf62	Q8N4C0	152 aa		5.13	□□□□□ -1.59
SYNE2-222	ENST00000556725	KCNRG	Q8N5I3	272 aa		5.13	□□□□□ -1.59
SYNE2-222	ENST00000556725	TMEM101	Q96IK0	257 aa		5.13	□□□□□ -1.59
SYNE2-222	ENST00000556725	BTF3L4	Q96K17	158 aa		5.13	□□□□□ -1.59
SYNE2-222	ENST00000556725	CDC42SE2	Q9NRR3	84 aa		5.13	□□□□□ -1.59
SYNE2-222	ENST00000556725	TRAV1-1	A0A0B4J248	108 aa		5.12	□□□□□ -1.59
SYNE2-222	ENST00000556725	GIP	P09681	153 aa	Predicted RBP	5.12	□□□□□ -1.59
SYNE2-222	ENST00000556725	PMCH	P20382	165 aa		5.12	□□□□□ -1.59
SYNE2-222	ENST00000556725	CENPW	Q5EE01	88 aa		5.12	□□□□□ -1.59
SYNE2-222	ENST00000556725	EIF5AL1	Q6IS14	154 aa	Known RBP	5.12	□□□□□ -1.59
SYNE2-222	ENST00000556725	KRTAP7-1	Q8IUC3	87 aa		5.12	□□□□□ -1.59
SYNE2-222	ENST00000556725	FAM213B	Q8TBF2	198 aa		5.12	□□□□□ -1.59
SYNE2-222	ENST00000556725	XKRY2	A2RUG3	117 aa		5.11	□□□□□ -1.59
SYNE2-222	ENST00000556725		G3V3Q6	166 aa		5.11	□□□□□ -1.59
SYNE2-222	ENST00000556725		I3L3M4	83 aa		5.11	□□□□□ -1.59
SYNE2-222	ENST00000556725	COX7A2L	O14548	114 aa		5.11	□□□□□ -1.59
SYNE2-222	ENST00000556725	TSHB	P01222	138 aa		5.11	□□□□□ -1.59
SYNE2-222	ENST00000556725	CTRL	P40313	264 aa		5.11	□□□□□ -1.59
SYNE2-222	ENST00000556725	RPL13A	P40429	203 aa	Known RBP	5.11	□□□□□ -1.59
SYNE2-222	ENST00000556725	CCL20	P78556	96 aa		5.11	□□□□□ -1.59
SYNE2-222	ENST00000556725	C5orf38	Q86SI9	138 aa		5.11	□□□□□ -1.59
SYNE2-222	ENST00000556725	RNASE13	Q5GAN3	156 aa	Known RBP	5.1	□□□□□ -1.59
SYNE2-222	ENST00000556725	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	5.1	□□□□□ -1.59
SYNE2-222	ENST00000556725	MRPL52	Q86TS9	123 aa	Known RBP	5.1	□□□□□ -1.59
SYNE2-222	ENST00000556725	C11orf52	Q96A22	123 aa		5.1	□□□□□ -1.59
SYNE2-222	ENST00000556725	C2orf48	Q96LS8	159 aa		5.1	□□□□□ -1.59
SYNE2-222	ENST00000556725	CNFN	Q9BYD5	112 aa		5.1	□□□□□ -1.59
SYNE2-222	ENST00000556725	RNASE7	Q9H1E1	156 aa	Known RBP	5.1	□□□□□ -1.59
SYNE2-222	ENST00000556725	TMEM242	Q9NWH2	141 aa		5.1	□□□□□ -1.59
SYNE2-222	ENST00000556725	TRBV20OR9-2	A0A075B6H5	130 aa		5.09	□□□□□ -1.59
SYNE2-222	ENST00000556725	C1orf196	B1AJZ1	125 aa		5.09	□□□□□ -1.59
SYNE2-222	ENST00000556725	ARPC5	O15511	151 aa		5.09	□□□□□ -1.59
SYNE2-222	ENST00000556725	C10orf25	Q5T742	122 aa		5.09	□□□□□ -1.59
SYNE2-222	ENST00000556725	AKAP14	Q86UN6	197 aa		5.09	□□□□□ -1.59
SYNE2-222	ENST00000556725	MRAP2	Q96G30	205 aa		5.09	□□□□□ -1.59
SYNE2-222	ENST00000556725	GNG13	Q9P2W3	67 aa		5.09	□□□□□ -1.59
SYNE2-222	ENST00000556725	CRCT1	Q9UGL9	99 aa		5.09	□□□□□ -1.59
SYNE2-222	ENST00000556725	TRAV13-1	A0A0B4J241	112 aa		5.08	□□□□□ -1.6
SYNE2-222	ENST00000556725	TRBV6-5	A0A0K0K1A5	114 aa		5.08	□□□□□ -1.6
SYNE2-222	ENST00000556725	GNG4	P50150	75 aa		5.08	□□□□□ -1.6
SYNE2-222	ENST00000556725	SPAG11B	Q08648	103 aa		5.08	□□□□□ -1.6
SYNE2-222	ENST00000556725	RPP21	Q9H633	154 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-222	ENST00000556725	CARHSP1	Q9Y2V2	147 aa	Known RBP	5.08	□□□□□ -1.6
SYNE2-222	ENST00000556725	FSIP2	Q5CZC0	6907 aa		5.07	□□□□□ -1.6

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