RNA–Protein interactions for RNA: ENST00000555953.1

SCFD1-217, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 497 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-217ENST00000555953 ABCC5O15440 1437 aa0.2□□□□□ -2.38
SCFD1-217ENST00000555953 IGF2RP11717 2491 aa0.19□□□□□ -2.38
SCFD1-217ENST00000555953 KDM5AP29375 1690 aaKnown RBP0.19□□□□□ -2.38
SCFD1-217ENST00000555953 RIMS1Q86UR5 1692 aaKnown RBP0.19□□□□□ -2.38
SCFD1-217ENST00000555953 SHANK2Q9UPX8 1470 aa0.19□□□□□ -2.38
SCFD1-217ENST00000555953 MPC2O95563 127 aa0.19□□□□□ -2.38
SCFD1-217ENST00000555953 MT-ATP8P03928 68 aa0.19□□□□□ -2.38
SCFD1-217ENST00000555953 LCN9Q8WX39 176 aa0.19□□□□□ -2.38
SCFD1-217ENST00000555953 CGREF1Q99674 301 aa0.19□□□□□ -2.38
SCFD1-217ENST00000555953 MANBALQ9NQG1 85 aa0.19□□□□□ -2.38
SCFD1-217ENST00000555953 LINC01558Q9Y6Z2 57 aa0.19□□□□□ -2.38
SCFD1-217ENST00000555953 NSD3Q9BZ95 1437 aa0.19□□□□□ -2.38
SCFD1-217ENST00000555953 ZFYVE16Q7Z3T8 1539 aa0.18□□□□□ -2.38
SCFD1-217ENST00000555953 F8P00451 2351 aa0.18□□□□□ -2.38
SCFD1-217ENST00000555953 WDR7Q9Y4E6 1490 aa0.18□□□□□ -2.38
SCFD1-217ENST00000555953 LRP6O75581 1613 aa0.18□□□□□ -2.38
SCFD1-217ENST00000555953 IGLC1P0CG04 106 aa0.18□□□□□ -2.38
SCFD1-217ENST00000555953 S100A10P60903 97 aa0.18□□□□□ -2.38
SCFD1-217ENST00000555953 NCMAPQ5T1S8 102 aa0.18□□□□□ -2.38
SCFD1-217ENST00000555953 GTF2H5Q6ZYL4 71 aa0.18□□□□□ -2.38
SCFD1-217ENST00000555953 BAGE2Q86Y30 109 aa0.18□□□□□ -2.38
SCFD1-217ENST00000555953 FAM223AQ8IWN6 122 aa0.18□□□□□ -2.38
SCFD1-217ENST00000555953 ARL2-SNX15V9GYD0 113 aa0.18□□□□□ -2.38
SCFD1-217ENST00000555953 EIF4G3O43432 1585 aaKnown RBP0.18□□□□□ -2.38
SCFD1-217ENST00000555953 HMGXB3Q12766 1538 aa0.18□□□□□ -2.38
SCFD1-217ENST00000555953 ASXL3Q9C0F0 2248 aa0.17□□□□□ -2.38
SCFD1-217ENST00000555953 SFT2D2O95562 160 aa0.17□□□□□ -2.38
SCFD1-217ENST00000555953 ASIPP42127 132 aa0.17□□□□□ -2.38
SCFD1-217ENST00000555953 RBP2P50120 134 aa0.17□□□□□ -2.38
SCFD1-217ENST00000555953 UBE2D3P61077 147 aa0.17□□□□□ -2.38
SCFD1-217ENST00000555953 UBE2D2P62837 147 aa0.17□□□□□ -2.38
SCFD1-217ENST00000555953 MRPS10P82664 201 aaKnown RBP0.17□□□□□ -2.38
SCFD1-217ENST00000555953 COX6A2Q02221 97 aa0.17□□□□□ -2.38
SCFD1-217ENST00000555953 SPHKAPQ2M3C7 1700 aa0.17□□□□□ -2.38
SCFD1-217ENST00000555953 TMEM170BQ5T4T1 132 aa0.17□□□□□ -2.38
SCFD1-217ENST00000555953 NRKQ7Z2Y5 1582 aa0.17□□□□□ -2.38
SCFD1-217ENST00000555953 CNFNQ9BYD5 112 aa0.17□□□□□ -2.38
SCFD1-217ENST00000555953 SCP2D1Q9UJQ7 156 aa0.17□□□□□ -2.38
SCFD1-217ENST00000555953 ARHGAP5Q13017 1502 aa0.17□□□□□ -2.38
SCFD1-217ENST00000555953 NCOR2Q9Y618 2525 aa0.17□□□□□ -2.38
SCFD1-217ENST00000555953 PIGBOS1A0A0B4J2F0 54 aa0.16□□□□□ -2.38
SCFD1-217ENST00000555953 TMEM218A2RU14 115 aa0.16□□□□□ -2.38
SCFD1-217ENST00000555953 FAM223BA6NKX1 122 aa0.16□□□□□ -2.38
SCFD1-217ENST00000555953 UQCR11O14957 56 aa0.16□□□□□ -2.38
SCFD1-217ENST00000555953 SMIM6P0DI80 62 aa0.16□□□□□ -2.38
SCFD1-217ENST00000555953 DCDP81605 110 aaKnown RBP0.16□□□□□ -2.38
SCFD1-217ENST00000555953 WHAMMP3Q1A5X7 153 aa0.16□□□□□ -2.38
SCFD1-217ENST00000555953 Q6JHZ5 121 aa0.16□□□□□ -2.38
SCFD1-217ENST00000555953 FDCSPQ8NFU4 85 aa0.16□□□□□ -2.38
SCFD1-217ENST00000555953 FAM167A-AS1Q96KT0 104 aa0.16□□□□□ -2.38
SCFD1-217ENST00000555953 TET3O43151 1660 aa0.16□□□□□ -2.38
SCFD1-217ENST00000555953 KIF21AQ7Z4S6 1674 aa0.16□□□□□ -2.38
SCFD1-217ENST00000555953 LRP1Q07954 4544 aaKnown RBP0.15□□□□□ -2.38
SCFD1-217ENST00000555953 MYH9P35579 1960 aaKnown RBP0.15□□□□□ -2.38
SCFD1-217ENST00000555953 DOCK11Q5JSL3 2073 aa0.15□□□□□ -2.38
SCFD1-217ENST00000555953 MYOM1P52179 1685 aa0.15□□□□□ -2.39
SCFD1-217ENST00000555953 COL4A6Q14031 1691 aa0.15□□□□□ -2.39
SCFD1-217ENST00000555953 FAM135AQ9P2D6 1515 aa0.15□□□□□ -2.39
SCFD1-217ENST00000555953 TRAV30A0A087WSZ9 112 aa0.15□□□□□ -2.39
SCFD1-217ENST00000555953 CRYM-AS1A6NIL9 109 aa0.15□□□□□ -2.39
SCFD1-217ENST00000555953 TMEM262E9PQX1 116 aa0.15□□□□□ -2.39
SCFD1-217ENST00000555953 I3L2K1 104 aa0.15□□□□□ -2.39
SCFD1-217ENST00000555953 GNGT2O14610 69 aa0.15□□□□□ -2.39
SCFD1-217ENST00000555953 SPRR4Q96PI1 79 aa0.15□□□□□ -2.39
SCFD1-217ENST00000555953 PRO0255Q9UI72 69 aa0.15□□□□□ -2.39
SCFD1-217ENST00000555953 PSME4Q14997 1843 aa0.15□□□□□ -2.39
SCFD1-217ENST00000555953 MYH8P13535 1937 aa0.15□□□□□ -2.39
SCFD1-217ENST00000555953 SCN7AQ01118 1682 aa0.14□□□□□ -2.39
SCFD1-217ENST00000555953 ZNF609O15014 1411 aa0.14□□□□□ -2.39
SCFD1-217ENST00000555953 IGSF10Q6WRI0 2623 aa0.14□□□□□ -2.39
SCFD1-217ENST00000555953 A0A0G2JND7 137 aa0.14□□□□□ -2.39
SCFD1-217ENST00000555953 ATP5EP56381 51 aaPredicted RBP0.14□□□□□ -2.39
SCFD1-217ENST00000555953 SEC11AP67812 179 aa0.14□□□□□ -2.39
SCFD1-217ENST00000555953 SMIM4Q8WVI0 70 aa0.14□□□□□ -2.39
SCFD1-217ENST00000555953 NXT2Q9NPJ8 142 aaKnown RBP0.14□□□□□ -2.39
SCFD1-217ENST00000555953 ADGRL2O95490 1459 aa0.14□□□□□ -2.39
SCFD1-217ENST00000555953 CNTLNQ9NXG0 1405 aa0.13□□□□□ -2.39
SCFD1-217ENST00000555953 EHBP1L1Q8N3D4 1523 aa0.13□□□□□ -2.39
SCFD1-217ENST00000555953 UBA52P62987 128 aaKnown RBP0.13□□□□□ -2.39
SCFD1-217ENST00000555953 Q5BKY6 102 aa0.13□□□□□ -2.39
SCFD1-217ENST00000555953 C10orf113Q5VZT2 155 aa0.13□□□□□ -2.39
SCFD1-217ENST00000555953 TCEAL7Q9BRU2 100 aa0.13□□□□□ -2.39
SCFD1-217ENST00000555953 PRO1854Q9UHT4 67 aa0.13□□□□□ -2.39
SCFD1-217ENST00000555953 TOP2BQ02880 1626 aa0.13□□□□□ -2.39
SCFD1-217ENST00000555953 ERCC6L2Q5T890 1561 aa0.12□□□□□ -2.39
SCFD1-217ENST00000555953 ABCC10Q5T3U5 1492 aa0.12□□□□□ -2.39
SCFD1-217ENST00000555953 ANKRD36BQ8N2N9 1353 aa0.12□□□□□ -2.39
SCFD1-217ENST00000555953 A0A087WVE0 104 aa0.12□□□□□ -2.39
SCFD1-217ENST00000555953 NAP1L6A6NFF2 107 aa0.12□□□□□ -2.39
SCFD1-217ENST00000555953 PIN1P1O15428 100 aa0.12□□□□□ -2.39
SCFD1-217ENST00000555953 APOC3P02656 99 aa0.12□□□□□ -2.39
SCFD1-217ENST00000555953 UQCR10Q9UDW1 63 aa0.12□□□□□ -2.39
SCFD1-217ENST00000555953 MAPKBP1O60336 1514 aa0.12□□□□□ -2.39
SCFD1-217ENST00000555953 ZFHX3Q15911 3703 aa0.12□□□□□ -2.39
SCFD1-217ENST00000555953 AHCTF1Q8WYP5 2266 aa0.11□□□□□ -2.39
SCFD1-217ENST00000555953 DOCK2Q92608 1830 aa0.11□□□□□ -2.39
SCFD1-217ENST00000555953 LINC00959A0A1B0GUT2 108 aa0.11□□□□□ -2.39
SCFD1-217ENST00000555953 SPINK1P00995 79 aa0.11□□□□□ -2.39
SCFD1-217ENST00000555953 TRAPPC2P0DI81 140 aa0.11□□□□□ -2.39
SCFD1-217ENST00000555953 TRAPPC2BP0DI82 140 aa0.11□□□□□ -2.39
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms