RNA–Protein interactions for RNA: ENST00000550662.1

NPAS3-208, Transcript of neuronal PAS domain protein 3, humanhuman

TSL 3

Gene NPAS3, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3-208ENST00000550662 SNAPC5O75971 98 aa0.24□□□□□ -2.37
NPAS3-208ENST00000550662 SMG6Q86US8 1419 aaKnown RBP0.23□□□□□ -2.37
NPAS3-208ENST00000550662 C2CD3Q4AC94 2353 aa0.23□□□□□ -2.37
NPAS3-208ENST00000550662 TRAV22A0A0B4J277 110 aa0.23□□□□□ -2.37
NPAS3-208ENST00000550662 IFITM1P13164 125 aa0.23□□□□□ -2.37
NPAS3-208ENST00000550662 MYOM2P54296 1465 aa0.22□□□□□ -2.37
NPAS3-208ENST00000550662 CUL7Q14999 1698 aa0.22□□□□□ -2.37
NPAS3-208ENST00000550662 RIMS1Q86UR5 1692 aaKnown RBP0.22□□□□□ -2.37
NPAS3-208ENST00000550662 UBE2L5PA0A1B0GUS4 154 aa0.22□□□□□ -2.37
NPAS3-208ENST00000550662 UBE2L3P68036 154 aaKnown RBP0.22□□□□□ -2.37
NPAS3-208ENST00000550662 IER3IP1Q9Y5U9 82 aa0.22□□□□□ -2.37
NPAS3-208ENST00000550662 ZNF236Q9UL36 1845 aa0.22□□□□□ -2.37
NPAS3-208ENST00000550662 KIF21AQ7Z4S6 1674 aa0.21□□□□□ -2.38
NPAS3-208ENST00000550662 LRP6O75581 1613 aa0.21□□□□□ -2.38
NPAS3-208ENST00000550662 EIF4G3O43432 1585 aaKnown RBP0.21□□□□□ -2.38
NPAS3-208ENST00000550662 IGLC7A0M8Q6 106 aa0.21□□□□□ -2.38
NPAS3-208ENST00000550662 LINC01558Q9Y6Z2 57 aa0.21□□□□□ -2.38
NPAS3-208ENST00000550662 UBR5O95071 2799 aaPredicted RBP0.21□□□□□ -2.38
NPAS3-208ENST00000550662 M0R3E3 92 aa0.2□□□□□ -2.38
NPAS3-208ENST00000550662 HMGN4O00479 90 aa0.2□□□□□ -2.38
NPAS3-208ENST00000550662 ATP5EP56381 51 aaPredicted RBP0.2□□□□□ -2.38
NPAS3-208ENST00000550662 ROBO1Q9Y6N7 1651 aa0.2□□□□□ -2.38
NPAS3-208ENST00000550662 SHROOM2Q13796 1616 aa0.2□□□□□ -2.38
NPAS3-208ENST00000550662 ZNF292O60281 2723 aa0.19□□□□□ -2.38
NPAS3-208ENST00000550662 FAM24AA6NFZ4 105 aa0.19□□□□□ -2.38
NPAS3-208ENST00000550662 BCE1O60756 84 aa0.19□□□□□ -2.38
NPAS3-208ENST00000550662 CFDP00746 253 aaPredicted RBP0.19□□□□□ -2.38
NPAS3-208ENST00000550662 GNG4P50150 75 aa0.19□□□□□ -2.38
NPAS3-208ENST00000550662 LINC00472Q9H8W2 130 aa0.19□□□□□ -2.38
NPAS3-208ENST00000550662 SBF2Q86WG5 1849 aa0.19□□□□□ -2.38
NPAS3-208ENST00000550662 NHSL1Q5SYE7 1610 aa0.19□□□□□ -2.38
NPAS3-208ENST00000550662 ERCC6L2Q5T890 1561 aa0.19□□□□□ -2.38
NPAS3-208ENST00000550662 C2orf88Q9BSF0 95 aa0.18□□□□□ -2.38
NPAS3-208ENST00000550662 LINC00474Q9P2X8 69 aa0.18□□□□□ -2.38
NPAS3-208ENST00000550662 PLCE1Q9P212 2302 aa0.18□□□□□ -2.38
NPAS3-208ENST00000550662 PSME4Q14997 1843 aa0.17□□□□□ -2.38
NPAS3-208ENST00000550662 CORTO00230 105 aa0.17□□□□□ -2.38
NPAS3-208ENST00000550662 Q8IZM0 81 aa0.17□□□□□ -2.38
NPAS3-208ENST00000550662 TMEM203Q969S6 136 aa0.17□□□□□ -2.38
NPAS3-208ENST00000550662 WFDC2Q14508 124 aa0.16□□□□□ -2.38
NPAS3-208ENST00000550662 Q6JHZ5 121 aa0.16□□□□□ -2.38
NPAS3-208ENST00000550662 AKAP6Q13023 2319 aa0.16□□□□□ -2.38
NPAS3-208ENST00000550662 MYOM1P52179 1685 aa0.15□□□□□ -2.39
NPAS3-208ENST00000550662 F6UZH7 168 aa0.15□□□□□ -2.39
NPAS3-208ENST00000550662 DPH3P1Q9H4G8 78 aa0.15□□□□□ -2.39
NPAS3-208ENST00000550662 UQCR10Q9UDW1 63 aa0.15□□□□□ -2.39
NPAS3-208ENST00000550662 WDR7Q9Y4E6 1490 aa0.15□□□□□ -2.39
NPAS3-208ENST00000550662 ABCA2Q9BZC7 2435 aa0.14□□□□□ -2.39
NPAS3-208ENST00000550662 LAMC1P11047 1609 aa0.14□□□□□ -2.39
NPAS3-208ENST00000550662 SFT2D2O95562 160 aa0.14□□□□□ -2.39
NPAS3-208ENST00000550662 PPP3R1P63098 170 aa0.14□□□□□ -2.39
NPAS3-208ENST00000550662 SVBPQ8N300 66 aa0.14□□□□□ -2.39
NPAS3-208ENST00000550662 TP53AIP1Q9HCN2 124 aa0.14□□□□□ -2.39
NPAS3-208ENST00000550662 PTPRQQ9UMZ3 2332 aa0.13□□□□□ -2.39
NPAS3-208ENST00000550662 CHKB-CPT1BH3BT56 60 aa0.13□□□□□ -2.39
NPAS3-208ENST00000550662 GNG8Q9UK08 70 aa0.13□□□□□ -2.39
NPAS3-208ENST00000550662 SHANK2Q9UPX8 1470 aa0.13□□□□□ -2.39
NPAS3-208ENST00000550662 NCOR1O75376 2440 aa0.13□□□□□ -2.39
NPAS3-208ENST00000550662 TCHHQ07283 1943 aa0.13□□□□□ -2.39
NPAS3-208ENST00000550662 C10orf71Q711Q0 1435 aa0.13□□□□□ -2.39
NPAS3-208ENST00000550662 MRPS10P82664 201 aaKnown RBP0.12□□□□□ -2.39
NPAS3-208ENST00000550662 WNK2Q9Y3S1 2297 aa0.12□□□□□ -2.39
NPAS3-208ENST00000550662 SSPOA2VEC9 5147 aa0.11□□□□□ -2.39
NPAS3-208ENST00000550662 COL7A1Q02388 2944 aa0.11□□□□□ -2.39
NPAS3-208ENST00000550662 DOPEY2Q9Y3R5 2298 aa0.11□□□□□ -2.39
NPAS3-208ENST00000550662 DCDP81605 110 aaKnown RBP0.11□□□□□ -2.39
NPAS3-208ENST00000550662 CDC42SE2Q9NRR3 84 aa0.11□□□□□ -2.39
NPAS3-208ENST00000550662 RAPGEF6Q8TEU7 1601 aa0.11□□□□□ -2.39
NPAS3-208ENST00000550662 CELSR1Q9NYQ6 3014 aa0.1□□□□□ -2.39
NPAS3-208ENST00000550662 PKDREJQ9NTG1 2253 aa0.1□□□□□ -2.39
NPAS3-208ENST00000550662 MAPKBP1O60336 1514 aa0.1□□□□□ -2.39
NPAS3-208ENST00000550662 MGPP08493 103 aa0.1□□□□□ -2.39
NPAS3-208ENST00000550662 GNG11P61952 73 aa0.1□□□□□ -2.39
NPAS3-208ENST00000550662 Q5VSD8 79 aa0.1□□□□□ -2.39
NPAS3-208ENST00000550662 C10orf142B7Z368 130 aa0.09□□□□□ -2.4
NPAS3-208ENST00000550662 FAM167A-AS1Q96KT0 104 aa0.09□□□□□ -2.4
NPAS3-208ENST00000550662 NXT2Q9NPJ8 142 aaKnown RBP0.09□□□□□ -2.4
NPAS3-208ENST00000550662 DSTQ03001 7570 aaKnown RBP0.09□□□□□ -2.4
NPAS3-208ENST00000550662 NEBP20929 6669 aa0.09□□□□□ -2.4
NPAS3-208ENST00000550662 LINC00587B1AMM8 73 aa0.08□□□□□ -2.4
NPAS3-208ENST00000550662 S100A1P23297 94 aa0.08□□□□□ -2.4
NPAS3-208ENST00000550662 WHAMMP3Q1A5X7 153 aa0.08□□□□□ -2.4
NPAS3-208ENST00000550662 FAIMQ9NVQ4 179 aa0.08□□□□□ -2.4
NPAS3-208ENST00000550662 MUC12Q9UKN1 5478 aa0.08□□□□□ -2.4
NPAS3-208ENST00000550662 NRKQ7Z2Y5 1582 aa0.07□□□□□ -2.4
NPAS3-208ENST00000550662 MYO7BQ6PIF6 2116 aa0.07□□□□□ -2.4
NPAS3-208ENST00000550662 SCAPERQ9BY12 1400 aa0.07□□□□□ -2.4
NPAS3-208ENST00000550662 I3L2K1 104 aa0.07□□□□□ -2.4
NPAS3-208ENST00000550662 ANKRD17O75179 2603 aaKnown RBP0.06□□□□□ -2.4
NPAS3-208ENST00000550662 PTPN13Q12923 2485 aa0.06□□□□□ -2.4
NPAS3-208ENST00000550662 DEFB109BQ30KR1 87 aa0.06□□□□□ -2.4
NPAS3-208ENST00000550662 PIGYQ3MUY2 71 aa0.06□□□□□ -2.4
NPAS3-208ENST00000550662 SPRR2GQ9BYE4 73 aa0.06□□□□□ -2.4
NPAS3-208ENST00000550662 FAM135AQ9P2D6 1515 aa0.06□□□□□ -2.4
NPAS3-208ENST00000550662 HUWE1Q7Z6Z7 4374 aaKnown RBP0.04□□□□□ -2.4
NPAS3-208ENST00000550662 ARHGEF5Q12774 1597 aa0.04□□□□□ -2.4
NPAS3-208ENST00000550662 TRBV6-1A0A0K0K1D8 114 aa0.04□□□□□ -2.4
NPAS3-208ENST00000550662 CSMD3Q7Z407 3707 aa0.04□□□□□ -2.4
NPAS3-208ENST00000550662 PZPP20742 1482 aa0.03□□□□□ -2.4
NPAS3-208ENST00000550662 PPRC1Q5VV67 1664 aaKnown RBP0.03□□□□□ -2.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms