RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 TRGC1P0CF51 173 aa6.32□□□□□ -1.4
VPS29-208ENST00000550267 BCL2P10415 239 aa6.32□□□□□ -1.4
VPS29-208ENST00000550267 CAMPP49913 170 aa6.32□□□□□ -1.4
VPS29-208ENST00000550267 DEFA1P59665 94 aa6.32□□□□□ -1.4
VPS29-208ENST00000550267 OR2D3Q8NGH3 330 aa6.32□□□□□ -1.4
VPS29-208ENST00000550267 A0A1B0GV50 99 aa6.31□□□□□ -1.4
VPS29-208ENST00000550267 H0Y9J4 135 aa6.31□□□□□ -1.4
VPS29-208ENST00000550267 TMUB2Q71RG4 321 aa6.31□□□□□ -1.4
VPS29-208ENST00000550267 GATD1Q8NB37 220 aa6.31□□□□□ -1.4
VPS29-208ENST00000550267 IGLV4-69A0A075B6H9 119 aa6.3□□□□□ -1.4
VPS29-208ENST00000550267 IGLV1-50A0A075B6I6 118 aa6.3□□□□□ -1.4
VPS29-208ENST00000550267 FXYD6-FXYD2A0A087WZ82 144 aa6.3□□□□□ -1.4
VPS29-208ENST00000550267 H7C423 109 aa6.3□□□□□ -1.4
VPS29-208ENST00000550267 PFDN1O60925 122 aa6.3□□□□□ -1.4
VPS29-208ENST00000550267 NCR2O95944 276 aa6.3□□□□□ -1.4
VPS29-208ENST00000550267 APCSP02743 223 aa6.3□□□□□ -1.4
VPS29-208ENST00000550267 RPS20P60866 119 aaKnown RBP6.3□□□□□ -1.4
VPS29-208ENST00000550267 CT83Q5H943 113 aa6.3□□□□□ -1.4
VPS29-208ENST00000550267 LYZL1Q6UWQ5 148 aa6.3□□□□□ -1.4
VPS29-208ENST00000550267 NUP35Q8NFH5 326 aa6.3□□□□□ -1.4
VPS29-208ENST00000550267 RPL39LQ96EH5 51 aaKnown RBP6.3□□□□□ -1.4
VPS29-208ENST00000550267 F2Z2F3 143 aa6.29□□□□□ -1.4
VPS29-208ENST00000550267 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.29□□□□□ -1.4
VPS29-208ENST00000550267 KRTAP1-4P0C5Y4 121 aa6.29□□□□□ -1.4
VPS29-208ENST00000550267 RPL35P42766 123 aaKnown RBP6.29□□□□□ -1.4
VPS29-208ENST00000550267 MEF2BQ02080 365 aaPredicted RBP6.29□□□□□ -1.4
VPS29-208ENST00000550267 RPL18AQ02543 176 aaKnown RBP6.29□□□□□ -1.4
VPS29-208ENST00000550267 KRTAP11-1Q8IUC1 163 aa6.29□□□□□ -1.4
VPS29-208ENST00000550267 ISOC2Q96AB3 205 aa6.29□□□□□ -1.4
VPS29-208ENST00000550267 BTF3L4Q96K17 158 aa6.29□□□□□ -1.4
VPS29-208ENST00000550267 C19orf71A6NCJ1 209 aa6.28□□□□□ -1.4
VPS29-208ENST00000550267 APOMO95445 188 aa6.28□□□□□ -1.4
VPS29-208ENST00000550267 ZNF25P17030 456 aaPredicted RBP6.28□□□□□ -1.4
VPS29-208ENST00000550267 EIF5AP63241 154 aaKnown RBP6.28□□□□□ -1.4
VPS29-208ENST00000550267 SS18Q15532 418 aa6.28□□□□□ -1.4
VPS29-208ENST00000550267 CD164L2Q6UWJ8 174 aa6.28□□□□□ -1.4
VPS29-208ENST00000550267 SFT2D1Q8WV19 159 aa6.28□□□□□ -1.4
VPS29-208ENST00000550267 TMEM101Q96IK0 257 aa6.28□□□□□ -1.4
VPS29-208ENST00000550267 CYTL1Q9NRR1 136 aa6.28□□□□□ -1.4
VPS29-208ENST00000550267 A0A087WZ39 114 aa6.27□□□□□ -1.41
VPS29-208ENST00000550267 GIPP09681 153 aaPredicted RBP6.27□□□□□ -1.41
VPS29-208ENST00000550267 UBE2D1P51668 147 aa6.27□□□□□ -1.41
VPS29-208ENST00000550267 CENPWQ5EE01 88 aa6.27□□□□□ -1.41
VPS29-208ENST00000550267 KCNRGQ8N5I3 272 aa6.27□□□□□ -1.41
VPS29-208ENST00000550267 FAM213BQ8TBF2 198 aa6.27□□□□□ -1.41
VPS29-208ENST00000550267 MBD3L1Q8WWY6 194 aa6.27□□□□□ -1.41
VPS29-208ENST00000550267 CAMK2N2Q96S95 79 aa6.27□□□□□ -1.41
VPS29-208ENST00000550267 TRAV1-1A0A0B4J248 108 aa6.26□□□□□ -1.41
VPS29-208ENST00000550267 XKRY2A2RUG3 117 aa6.26□□□□□ -1.41
VPS29-208ENST00000550267 SDHAF1A6NFY7 115 aa6.26□□□□□ -1.41
VPS29-208ENST00000550267 IFNA1P01562 189 aa6.26□□□□□ -1.41
VPS29-208ENST00000550267 MALP21145 153 aa6.26□□□□□ -1.41
VPS29-208ENST00000550267 TWIST1Q15672 202 aa6.26□□□□□ -1.41
VPS29-208ENST00000550267 OPRPNQ99935 248 aaPredicted RBP6.26□□□□□ -1.41
VPS29-208ENST00000550267 RAB19A4D1S5 217 aa6.25□□□□□ -1.41
VPS29-208ENST00000550267 BCL2L11O43521 198 aa6.25□□□□□ -1.41
VPS29-208ENST00000550267 ESDP10768 282 aa6.25□□□□□ -1.41
VPS29-208ENST00000550267 PMCHP20382 165 aa6.25□□□□□ -1.41
VPS29-208ENST00000550267 CTRLP40313 264 aa6.25□□□□□ -1.41
VPS29-208ENST00000550267 EIF5AL1Q6IS14 154 aaKnown RBP6.25□□□□□ -1.41
VPS29-208ENST00000550267 C11orf52Q96A22 123 aa6.25□□□□□ -1.41
VPS29-208ENST00000550267 CDC42SE2Q9NRR3 84 aa6.25□□□□□ -1.41
VPS29-208ENST00000550267 MUC17Q685J3 4493 aa6.24□□□□□ -1.41
VPS29-208ENST00000550267 FAM168BA1KXE4 195 aa6.24□□□□□ -1.41
VPS29-208ENST00000550267 I3L3M4 83 aa6.24□□□□□ -1.41
VPS29-208ENST00000550267 COX7A2LO14548 114 aa6.24□□□□□ -1.41
VPS29-208ENST00000550267 TSPAN13O95857 204 aa6.24□□□□□ -1.41
VPS29-208ENST00000550267 RPL13AP40429 203 aaKnown RBP6.24□□□□□ -1.41
VPS29-208ENST00000550267 FOXA3P55318 350 aaPredicted RBP6.24□□□□□ -1.41
VPS29-208ENST00000550267 C9orf62Q8N4C0 152 aa6.24□□□□□ -1.41
VPS29-208ENST00000550267 C2orf48Q96LS8 159 aa6.24□□□□□ -1.41
VPS29-208ENST00000550267 G3V3Q6 166 aa6.23□□□□□ -1.41
VPS29-208ENST00000550267 ARPC5O15511 151 aa6.23□□□□□ -1.41
VPS29-208ENST00000550267 TSHBP01222 138 aa6.23□□□□□ -1.41
VPS29-208ENST00000550267 MRAP2Q96G30 205 aa6.23□□□□□ -1.41
VPS29-208ENST00000550267 CNFNQ9BYD5 112 aa6.23□□□□□ -1.41
VPS29-208ENST00000550267 TMEM242Q9NWH2 141 aa6.23□□□□□ -1.41
VPS29-208ENST00000550267 GNG4P50150 75 aa6.22□□□□□ -1.41
VPS29-208ENST00000550267 BLOC1S1P78537 153 aa6.22□□□□□ -1.41
VPS29-208ENST00000550267 CCL20P78556 96 aa6.22□□□□□ -1.41
VPS29-208ENST00000550267 SPAG11BQ08648 103 aa6.22□□□□□ -1.41
VPS29-208ENST00000550267 FAM19A5Q7Z5A7 132 aaPredicted RBP6.22□□□□□ -1.41
VPS29-208ENST00000550267 C5orf38Q86SI9 138 aa6.22□□□□□ -1.41
VPS29-208ENST00000550267 MRPL52Q86TS9 123 aaKnown RBP6.22□□□□□ -1.41
VPS29-208ENST00000550267 TSKUQ8WUA8 353 aa6.22□□□□□ -1.41
VPS29-208ENST00000550267 GNG13Q9P2W3 67 aa6.22□□□□□ -1.41
VPS29-208ENST00000550267 TRBV6-5A0A0K0K1A5 114 aa6.21□□□□□ -1.42
VPS29-208ENST00000550267 C1orf196B1AJZ1 125 aa6.21□□□□□ -1.42
VPS29-208ENST00000550267 UMAD1C9J7I0 102 aa6.21□□□□□ -1.42
VPS29-208ENST00000550267 SMIM12Q96EX1 92 aa6.21□□□□□ -1.42
VPS29-208ENST00000550267 TRBV20OR9-2A0A075B6H5 130 aa6.2□□□□□ -1.42
VPS29-208ENST00000550267 RNASE13Q5GAN3 156 aaKnown RBP6.2□□□□□ -1.42
VPS29-208ENST00000550267 TEX261Q6UWH6 196 aa6.2□□□□□ -1.42
VPS29-208ENST00000550267 SMIM15Q7Z3B0 74 aa6.2□□□□□ -1.42
VPS29-208ENST00000550267 KRTAP7-1Q8IUC3 87 aa6.2□□□□□ -1.42
VPS29-208ENST00000550267 RNASE7Q9H1E1 156 aaKnown RBP6.2□□□□□ -1.42
VPS29-208ENST00000550267 MANBALQ9NQG1 85 aa6.2□□□□□ -1.42
VPS29-208ENST00000550267 CARHSP1Q9Y2V2 147 aaKnown RBP6.2□□□□□ -1.42
VPS29-208ENST00000550267 TRAV13-1A0A0B4J241 112 aa6.19□□□□□ -1.42
VPS29-208ENST00000550267 UBE2BP63146 152 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 618.6 ms