RNA–Protein interactions for RNA: ENST00000549678.1

PTCH1-219, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 578 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-219ENST00000549678 TMEM136Q6ZRR5 245 aa4.82□□□□□ -1.64
PTCH1-219ENST00000549678 PRELID3AQ96N28 172 aa4.82□□□□□ -1.64
PTCH1-219ENST00000549678 C20orf78Q9BR46 151 aa4.82□□□□□ -1.64
PTCH1-219ENST00000549678 MAP1LC3AQ9H492 121 aa4.82□□□□□ -1.64
PTCH1-219ENST00000549678 RPS10P5Q9NQ39 176 aa4.82□□□□□ -1.64
PTCH1-219ENST00000549678 AP5S1Q9NUS5 200 aa4.82□□□□□ -1.64
PTCH1-219ENST00000549678 LOC389332A0A1B0GUA5 103 aa4.81□□□□□ -1.64
PTCH1-219ENST00000549678 USP17L23D6RBM5 183 aa4.81□□□□□ -1.64
PTCH1-219ENST00000549678 NPYP01303 97 aa4.81□□□□□ -1.64
PTCH1-219ENST00000549678 POLR2KP53803 58 aaKnown RBP4.81□□□□□ -1.64
PTCH1-219ENST00000549678 WFDC2Q14508 124 aa4.81□□□□□ -1.64
PTCH1-219ENST00000549678 SS18Q15532 418 aa4.81□□□□□ -1.64
PTCH1-219ENST00000549678 NRACQ8N912 160 aa4.81□□□□□ -1.64
PTCH1-219ENST00000549678 IMMP2LQ96T52 175 aa4.81□□□□□ -1.64
PTCH1-219ENST00000549678 SMIM2Q9BVW6 85 aa4.81□□□□□ -1.64
PTCH1-219ENST00000549678 PRR34Q9NV39 138 aa4.81□□□□□ -1.64
PTCH1-219ENST00000549678 GAGE12HA6NDE8 117 aa4.8□□□□□ -1.64
PTCH1-219ENST00000549678 EPM2AB3EWF7 344 aa4.8□□□□□ -1.64
PTCH1-219ENST00000549678 PHOX2AO14813 284 aa4.8□□□□□ -1.64
PTCH1-219ENST00000549678 APOC3P02656 99 aa4.8□□□□□ -1.64
PTCH1-219ENST00000549678 TRBV24-1A0A075B6N3 115 aa4.79□□□□□ -1.64
PTCH1-219ENST00000549678 TRAV9-1A0A075B6T8 112 aa4.79□□□□□ -1.64
PTCH1-219ENST00000549678 hDV102S1A0JD36 115 aa4.79□□□□□ -1.64
PTCH1-219ENST00000549678 ESDP10768 282 aa4.79□□□□□ -1.64
PTCH1-219ENST00000549678 IFI27P40305 119 aaPredicted RBP4.79□□□□□ -1.64
PTCH1-219ENST00000549678 XCL1P47992 114 aa4.79□□□□□ -1.64
PTCH1-219ENST00000549678 RHEBQ15382 184 aa4.79□□□□□ -1.64
PTCH1-219ENST00000549678 CFAP161Q6P656 301 aa4.79□□□□□ -1.64
PTCH1-219ENST00000549678 ZNF664Q8N3J9 261 aa4.79□□□□□ -1.64
PTCH1-219ENST00000549678 CLRN3Q8NCR9 226 aa4.79□□□□□ -1.64
PTCH1-219ENST00000549678 CHCHD10Q8WYQ3 142 aaPredicted RBP4.79□□□□□ -1.64
PTCH1-219ENST00000549678 LAMTOR2Q9Y2Q5 125 aa4.79□□□□□ -1.64
PTCH1-219ENST00000549678 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.78□□□□□ -1.64
PTCH1-219ENST00000549678 CCL25O15444 150 aa4.78□□□□□ -1.64
PTCH1-219ENST00000549678 SNAPINO95295 136 aa4.78□□□□□ -1.64
PTCH1-219ENST00000549678 MALP21145 153 aa4.78□□□□□ -1.64
PTCH1-219ENST00000549678 KRTAP10-1P60331 282 aa4.78□□□□□ -1.64
PTCH1-219ENST00000549678 RPL32P62910 135 aaKnown RBP4.78□□□□□ -1.64
PTCH1-219ENST00000549678 COX19Q49B96 90 aa4.78□□□□□ -1.64
PTCH1-219ENST00000549678 RNASE13Q5GAN3 156 aaKnown RBP4.78□□□□□ -1.64
PTCH1-219ENST00000549678 MRPL52Q86TS9 123 aaKnown RBP4.78□□□□□ -1.64
PTCH1-219ENST00000549678 SVBPQ8N300 66 aa4.78□□□□□ -1.64
PTCH1-219ENST00000549678 CARHSP1Q9Y2V2 147 aaKnown RBP4.78□□□□□ -1.64
PTCH1-219ENST00000549678 UBE2D4Q9Y2X8 147 aa4.78□□□□□ -1.64
PTCH1-219ENST00000549678 TRAV13-1A0A0B4J241 112 aa4.77□□□□□ -1.65
PTCH1-219ENST00000549678 LINC00959A0A1B0GUT2 108 aa4.77□□□□□ -1.65
PTCH1-219ENST00000549678 XGP55808 180 aa4.77□□□□□ -1.65
PTCH1-219ENST00000549678 KIAA1644Q3SXP7 199 aa4.77□□□□□ -1.65
PTCH1-219ENST00000549678 LINC01620Q4KN68 170 aa4.77□□□□□ -1.65
PTCH1-219ENST00000549678 Q6ZUT4 128 aa4.77□□□□□ -1.65
PTCH1-219ENST00000549678 SMCO4Q9NRQ5 59 aa4.77□□□□□ -1.65
PTCH1-219ENST00000549678 CDC42SE2Q9NRR3 84 aa4.77□□□□□ -1.65
PTCH1-219ENST00000549678 IFITM10A6NMD0 228 aa4.76□□□□□ -1.65
PTCH1-219ENST00000549678 C1orf196B1AJZ1 125 aa4.76□□□□□ -1.65
PTCH1-219ENST00000549678 MT-ND6P03923 174 aa4.76□□□□□ -1.65
PTCH1-219ENST00000549678 PRSS1P07477 247 aa4.76□□□□□ -1.65
PTCH1-219ENST00000549678 G0S2P27469 103 aa4.76□□□□□ -1.65
PTCH1-219ENST00000549678 RPL39P62891 51 aaKnown RBP4.76□□□□□ -1.65
PTCH1-219ENST00000549678 HAMPP81172 84 aa4.76□□□□□ -1.65
PTCH1-219ENST00000549678 HIGD2BQ4VC39 106 aa4.76□□□□□ -1.65
PTCH1-219ENST00000549678 ORMDL2Q53FV1 153 aa4.76□□□□□ -1.65
PTCH1-219ENST00000549678 Q6ZN92 141 aa4.76□□□□□ -1.65
PTCH1-219ENST00000549678 Q8N8P6 123 aa4.76□□□□□ -1.65
PTCH1-219ENST00000549678 PRSS3P2Q8NHM4 247 aa4.76□□□□□ -1.65
PTCH1-219ENST00000549678 NXT2Q9NPJ8 142 aaKnown RBP4.76□□□□□ -1.65
PTCH1-219ENST00000549678 SPANXA1Q9NS26 97 aa4.76□□□□□ -1.65
PTCH1-219ENST00000549678 CYSLTR1Q9Y271 337 aa4.76□□□□□ -1.65
PTCH1-219ENST00000549678 IGHV1-58A0A0C4DH39 117 aa4.75□□□□□ -1.65
PTCH1-219ENST00000549678 FAM229AH3BQW9 127 aa4.75□□□□□ -1.65
PTCH1-219ENST00000549678 ZNF561-AS1K7EIQ3 104 aa4.75□□□□□ -1.65
PTCH1-219ENST00000549678 APOMO95445 188 aa4.75□□□□□ -1.65
PTCH1-219ENST00000549678 INAFM2P0DMQ5 153 aa4.75□□□□□ -1.65
PTCH1-219ENST00000549678 FABP9Q0Z7S8 132 aa4.75□□□□□ -1.65
PTCH1-219ENST00000549678 C10orf91Q5T1B1 145 aa4.75□□□□□ -1.65
PTCH1-219ENST00000549678 Q5VSD8 79 aa4.75□□□□□ -1.65
PTCH1-219ENST00000549678 DPH3Q96FX2 82 aa4.75□□□□□ -1.65
PTCH1-219ENST00000549678 C2orf88Q9BSF0 95 aa4.75□□□□□ -1.65
PTCH1-219ENST00000549678 TIMM21Q9BVV7 248 aa4.75□□□□□ -1.65
PTCH1-219ENST00000549678 GNB1LQ9BYB4 327 aa4.75□□□□□ -1.65
PTCH1-219ENST00000549678 MRPL18Q9H0U6 180 aaKnown RBP4.75□□□□□ -1.65
PTCH1-219ENST00000549678 CSDC2Q9Y534 153 aaKnown RBP4.75□□□□□ -1.65
PTCH1-219ENST00000549678 FAT3Q8TDW7 4589 aa4.74□□□□□ -1.65
PTCH1-219ENST00000549678 IGHV3-64A0A075B6Q5 118 aa4.74□□□□□ -1.65
PTCH1-219ENST00000549678 K7EMI3 77 aa4.74□□□□□ -1.65
PTCH1-219ENST00000549678 COX7A2LO14548 114 aa4.74□□□□□ -1.65
PTCH1-219ENST00000549678 SMR3BP02814 79 aaPredicted RBP4.74□□□□□ -1.65
PTCH1-219ENST00000549678 KRTAP26-1Q6PEX3 210 aa4.74□□□□□ -1.65
PTCH1-219ENST00000549678 CD164L2Q6UWJ8 174 aa4.74□□□□□ -1.65
PTCH1-219ENST00000549678 C2orf66Q6UXQ4 117 aa4.74□□□□□ -1.65
PTCH1-219ENST00000549678 TEX43Q6ZNM6 134 aa4.74□□□□□ -1.65
PTCH1-219ENST00000549678 FA2HQ7L5A8 372 aa4.74□□□□□ -1.65
PTCH1-219ENST00000549678 TRAPPC1Q9Y5R8 145 aa4.74□□□□□ -1.65
PTCH1-219ENST00000549678 TGIF2-C20orf24A0A0A6YYL0 155 aa4.73□□□□□ -1.65
PTCH1-219ENST00000549678 PRSS47A8MTI9 375 aa4.73□□□□□ -1.65
PTCH1-219ENST00000549678 FOXI1Q12951 378 aa4.73□□□□□ -1.65
PTCH1-219ENST00000549678 C5orf38Q86SI9 138 aa4.73□□□□□ -1.65
PTCH1-219ENST00000549678 C15orf56Q8N910 161 aa4.73□□□□□ -1.65
PTCH1-219ENST00000549678 C9orf163Q8N9P6 203 aa4.73□□□□□ -1.65
PTCH1-219ENST00000549678 TMEM141Q96I45 108 aa4.73□□□□□ -1.65
PTCH1-219ENST00000549678 OPRPNQ99935 248 aaPredicted RBP4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms