RNA–Protein interactions for RNA: ENST00000544584.1

CLSTN3-215, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 546 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-215ENST00000544584 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 IGKV2-29A2NJV5 120 aaPredicted RBP3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 LINC01549A6NIU2 74 aa3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 ZNF561-AS1K7EIQ3 104 aa3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 K7EMI3 77 aa3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 POLR2KP53803 58 aaKnown RBP3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 KRTAP10-1P60331 282 aa3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 CNBPP62633 177 aaKnown RBP3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 COX19Q49B96 90 aa3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 PAPPA-AS1Q5QFB9 102 aa3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 CLPSL2Q6UWE3 100 aa3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 MRPL52Q86TS9 123 aaKnown RBP3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 Q8N3U1 123 aa3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 C20orf203Q8NBC4 194 aa3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 CHCHD10Q8WYQ3 142 aaPredicted RBP3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 IMMP2LQ96T52 175 aa3.69□□□□□ -1.82
CLSTN3-215ENST00000544584 FAT1Q14517 4588 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 VPS13BQ7Z7G8 4022 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 IGLV4-60A0A075B6I1 120 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 TRAV9-1A0A075B6T8 112 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 IGHV1-58A0A0C4DH39 117 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 RPS10P46783 165 aaKnown RBP3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 NDUFA5Q16718 116 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 MRPL51Q4U2R6 128 aaKnown RBP3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 ORMDL2Q53FV1 153 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 CLLU1Q5K131 121 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 SERTAD4-AS1Q5TG53 156 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 Q5VSD8 79 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 MRPL54Q6P161 138 aaKnown RBP3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 CD164L2Q6UWJ8 174 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 TMEM136Q6ZRR5 245 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 ZNF664Q8N3J9 261 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 RNF185Q96GF1 192 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 CHAC1Q9BUX1 264 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 TIMM21Q9BVV7 248 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 CTDSP1Q9GZU7 261 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 SPANXA1Q9NS26 97 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 TMEM242Q9NWH2 141 aa3.68□□□□□ -1.82
CLSTN3-215ENST00000544584 KRTAP9-6A0A140TA67 174 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 GAGE12HA6NDE8 117 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 D6R8Y8 96 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 F8WDY8 70 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 J3QL48 77 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 COX7A2LO14548 114 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 TNFRSF6BO95407 300 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 TSHBP01222 138 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 PRSS1P07477 247 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 ESDP10768 282 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 IFI27P40305 119 aaPredicted RBP3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 XCL1P47992 114 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 Q6ZN92 141 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 C9orf163Q8N9P6 203 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 DEFB104AQ8WTQ1 72 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 C7orf33Q8WU49 177 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 PRELID3AQ96N28 172 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 C2orf88Q9BSF0 95 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 SMIM2Q9BVW6 85 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 MAP1LC3AQ9H492 121 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 NXT2Q9NPJ8 142 aaKnown RBP3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 CDC42SE2Q9NRR3 84 aa3.67□□□□□ -1.82
CLSTN3-215ENST00000544584 TGIF2-C20orf24A0A0A6YYL0 155 aa3.66□□□□□ -1.82
CLSTN3-215ENST00000544584 LINC00959A0A1B0GUT2 108 aa3.66□□□□□ -1.82
CLSTN3-215ENST00000544584 C9JQL5 133 aa3.66□□□□□ -1.82
CLSTN3-215ENST00000544584 NPSP0C0P6 89 aa3.66□□□□□ -1.82
CLSTN3-215ENST00000544584 XGP55808 180 aa3.66□□□□□ -1.82
CLSTN3-215ENST00000544584 SEC11AP67812 179 aa3.66□□□□□ -1.82
CLSTN3-215ENST00000544584 SRSF3P84103 164 aaKnown RBP3.66□□□□□ -1.82
CLSTN3-215ENST00000544584 Q6ZSA8 131 aa3.66□□□□□ -1.82
CLSTN3-215ENST00000544584 SEC11CQ9BY50 192 aa3.66□□□□□ -1.82
CLSTN3-215ENST00000544584 KRTAP9-2Q9BYQ4 174 aa3.66□□□□□ -1.82
CLSTN3-215ENST00000544584 TRAV13-1A0A0B4J241 112 aa3.65□□□□□ -1.83
CLSTN3-215ENST00000544584 A0A1B0GXF2 115 aa3.65□□□□□ -1.83
CLSTN3-215ENST00000544584 TMEM218A2RU14 115 aa3.65□□□□□ -1.83
CLSTN3-215ENST00000544584 SMKR1H3BMG3 65 aa3.65□□□□□ -1.83
CLSTN3-215ENST00000544584 SMR3BP02814 79 aaPredicted RBP3.65□□□□□ -1.83
CLSTN3-215ENST00000544584 MT-ND6P03923 174 aa3.65□□□□□ -1.83
CLSTN3-215ENST00000544584 FUSP35637 526 aaKnown RBP eCLIP3.65□□□□□ -1.83
CLSTN3-215ENST00000544584 MRPS36P82909 103 aaKnown RBP3.65□□□□□ -1.83
CLSTN3-215ENST00000544584 WFDC2Q14508 124 aa3.65□□□□□ -1.83
CLSTN3-215ENST00000544584 LINC00528Q8N1L1 170 aa3.65□□□□□ -1.83
CLSTN3-215ENST00000544584 NRACQ8N912 160 aa3.65□□□□□ -1.83
CLSTN3-215ENST00000544584 UBE2D4Q9Y2X8 147 aa3.65□□□□□ -1.83
CLSTN3-215ENST00000544584 GVQW2A0A096LPI5 108 aaPredicted RBP3.64□□□□□ -1.83
CLSTN3-215ENST00000544584 IFITM10A6NMD0 228 aa3.64□□□□□ -1.83
CLSTN3-215ENST00000544584 PRSS47A8MTI9 375 aa3.64□□□□□ -1.83
CLSTN3-215ENST00000544584 RHEBQ15382 184 aa3.64□□□□□ -1.83
CLSTN3-215ENST00000544584 TEX43Q6ZNM6 134 aa3.64□□□□□ -1.83
CLSTN3-215ENST00000544584 SCXQ7RTU7 201 aa3.64□□□□□ -1.83
CLSTN3-215ENST00000544584 OR10D4PQ8NGN7 298 aa3.64□□□□□ -1.83
CLSTN3-215ENST00000544584 PRSS3P2Q8NHM4 247 aa3.64□□□□□ -1.83
CLSTN3-215ENST00000544584 TMEM141Q96I45 108 aa3.64□□□□□ -1.83
CLSTN3-215ENST00000544584 CARD19Q96LW7 228 aa3.64□□□□□ -1.83
CLSTN3-215ENST00000544584 VCX2Q9H322 139 aa3.64□□□□□ -1.83
CLSTN3-215ENST00000544584 CYSLTR1Q9Y271 337 aa3.64□□□□□ -1.83
CLSTN3-215ENST00000544584 PYGO1Q9Y3Y4 419 aa3.64□□□□□ -1.83
CLSTN3-215ENST00000544584 RNF213Q63HN8 5207 aa3.63□□□□□ -1.83
CLSTN3-215ENST00000544584 IGLV4-69A0A075B6H9 119 aa3.63□□□□□ -1.83
CLSTN3-215ENST00000544584 LOC107984640A0A0U1RRK4 108 aa3.63□□□□□ -1.83
CLSTN3-215ENST00000544584 SNAPINO95295 136 aa3.63□□□□□ -1.83
CLSTN3-215ENST00000544584 RPL37AP61513 92 aaKnown RBP3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms