RNA–Protein interactions for RNA: ENST00000543995.5

TNFRSF1A-216, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 1,531 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-216ENST00000543995 RYR3Q15413 4870 aa9.7□□□□□ -0.86
TNFRSF1A-216ENST00000543995 LINC01546A6NGU7 62 aa9.7□□□□□ -0.86
TNFRSF1A-216ENST00000543995 LINC00614P0C842 121 aa9.7□□□□□ -0.86
TNFRSF1A-216ENST00000543995 ZNF664Q8N3J9 261 aa9.7□□□□□ -0.86
TNFRSF1A-216ENST00000543995 TIMM21Q9BVV7 248 aa9.7□□□□□ -0.86
TNFRSF1A-216ENST00000543995 TM2D2Q9BX73 214 aa9.7□□□□□ -0.86
TNFRSF1A-216ENST00000543995 CDC42SE2Q9NRR3 84 aa9.7□□□□□ -0.86
TNFRSF1A-216ENST00000543995 Q6ZRN7 208 aaPredicted RBP9.69□□□□□ -0.86
TNFRSF1A-216ENST00000543995 C1orf43Q9BWL3 253 aa9.69□□□□□ -0.86
TNFRSF1A-216ENST00000543995 RNASE13Q5GAN3 156 aaKnown RBP9.68□□□□□ -0.86
TNFRSF1A-216ENST00000543995 LINC00336Q6ZUF6 198 aa9.68□□□□□ -0.86
TNFRSF1A-216ENST00000543995 Q6ZUT4 128 aa9.68□□□□□ -0.86
TNFRSF1A-216ENST00000543995 BAGE3Q86Y29 109 aa9.68□□□□□ -0.86
TNFRSF1A-216ENST00000543995 IGLV10-54A0A075B6I4 117 aa9.67□□□□□ -0.86
TNFRSF1A-216ENST00000543995 PRSS29PA6NIE9 313 aa9.67□□□□□ -0.86
TNFRSF1A-216ENST00000543995 TOMM6Q96B49 74 aa9.67□□□□□ -0.86
TNFRSF1A-216ENST00000543995 URB1-AS1Q96HZ7 61 aa9.67□□□□□ -0.86
TNFRSF1A-216ENST00000543995 OPRPNQ99935 248 aaPredicted RBP9.67□□□□□ -0.86
TNFRSF1A-216ENST00000543995 COX11Q9Y6N1 276 aa9.67□□□□□ -0.86
TNFRSF1A-216ENST00000543995 TRAV8-4A0A0B4J246 113 aa9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 HIST1H2BKO60814 126 aa9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 HIST1H2BJP06899 126 aa9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 HIST1H2BOP23527 126 aa9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 HIST1H2BBP33778 126 aa9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 HIST1H2BDP58876 126 aa9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 HIST1H2BCP62807 126 aa9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 HIST2H2BEQ16778 126 aa9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 HIST1H2BHQ93079 126 aa9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 HIST1H2BNQ99877 126 aa9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 HIST1H2BMQ99879 126 aa9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 PYGO1Q9Y3Y4 419 aa9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 TNP2Q05952 138 aa9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 CHCHD1Q96BP2 118 aaKnown RBP9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 FRAS1Q86XX4 4008 aa9.66□□□□□ -0.86
TNFRSF1A-216ENST00000543995 LINC01549A6NIU2 74 aa9.65□□□□□ -0.86
TNFRSF1A-216ENST00000543995 MRPS36P82909 103 aaKnown RBP9.65□□□□□ -0.86
TNFRSF1A-216ENST00000543995 PMCHL1Q16048 86 aa9.65□□□□□ -0.86
TNFRSF1A-216ENST00000543995 Q6ZN92 141 aa9.65□□□□□ -0.86
TNFRSF1A-216ENST00000543995 TMEM141Q96I45 108 aa9.65□□□□□ -0.86
TNFRSF1A-216ENST00000543995 SCGB3A1Q96QR1 104 aa9.65□□□□□ -0.86
TNFRSF1A-216ENST00000543995 IGLV4-3A0A075B6K6 122 aa9.64□□□□□ -0.87
TNFRSF1A-216ENST00000543995 LINC00959A0A1B0GUT2 108 aa9.64□□□□□ -0.87
TNFRSF1A-216ENST00000543995 C1orf196B1AJZ1 125 aa9.64□□□□□ -0.87
TNFRSF1A-216ENST00000543995 SS18Q15532 418 aa9.64□□□□□ -0.87
TNFRSF1A-216ENST00000543995 DNAH2Q9P225 4427 aa9.64□□□□□ -0.87
TNFRSF1A-216ENST00000543995 TRAV13-1A0A0B4J241 112 aa9.63□□□□□ -0.87
TNFRSF1A-216ENST00000543995 IGIPA6NJ69 53 aa9.63□□□□□ -0.87
TNFRSF1A-216ENST00000543995 HSBP1O75506 76 aa9.63□□□□□ -0.87
TNFRSF1A-216ENST00000543995 HBDP02042 147 aa9.63□□□□□ -0.87
TNFRSF1A-216ENST00000543995 ERASQ7Z444 233 aa9.63□□□□□ -0.87
TNFRSF1A-216ENST00000543995 FAM104AQ969W3 186 aa9.63□□□□□ -0.87
TNFRSF1A-216ENST00000543995 TIMM17AQ99595 171 aa9.63□□□□□ -0.87
TNFRSF1A-216ENST00000543995 TEX43Q6ZNM6 134 aa9.62□□□□□ -0.87
TNFRSF1A-216ENST00000543995 CHCHD10Q8WYQ3 142 aaPredicted RBP9.62□□□□□ -0.87
TNFRSF1A-216ENST00000543995 IFITM10A6NMD0 228 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 EREGO14944 169 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 CCL25O15444 150 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 SERF1AO75920 110 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 NPSP0C0P6 89 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 XCL1P47992 114 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 PAPPA-AS1Q5QFB9 102 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 MAPKAPK5-AS1Q8N8E1 139 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 BAALCQ8WXS3 180 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 C2orf88Q9BSF0 95 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 VCX2Q9H322 139 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 DNAH10Q8IVF4 4471 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 A0A096LNJ9 63 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 GAGE12HA6NDE8 117 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 LINC00310P59036 64 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 KRTAP26-1Q6PEX3 210 aa9.61□□□□□ -0.87
TNFRSF1A-216ENST00000543995 A0A087WTM6 91 aa9.6□□□□□ -0.87
TNFRSF1A-216ENST00000543995 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.6□□□□□ -0.87
TNFRSF1A-216ENST00000543995 LECT2O14960 151 aa9.6□□□□□ -0.87
TNFRSF1A-216ENST00000543995 ZC2HC1BQ5TFG8 222 aa9.6□□□□□ -0.87
TNFRSF1A-216ENST00000543995 LRCOL1A6NCL2 159 aa9.59□□□□□ -0.87
TNFRSF1A-216ENST00000543995 NUPR1O60356 82 aa9.59□□□□□ -0.87
TNFRSF1A-216ENST00000543995 FAM19A2Q8N3H0 131 aa9.59□□□□□ -0.87
TNFRSF1A-216ENST00000543995 DNAH17Q9UFH2 4485 aa9.58□□□□□ -0.88
TNFRSF1A-216ENST00000543995 AMELXQ99217 191 aa9.58□□□□□ -0.88
TNFRSF1A-216ENST00000543995 ATP5LO75964 103 aa9.57□□□□□ -0.88
TNFRSF1A-216ENST00000543995 PDZD11Q5EBL8 140 aa9.57□□□□□ -0.88
TNFRSF1A-216ENST00000543995 CD164L2Q6UWJ8 174 aa9.57□□□□□ -0.88
TNFRSF1A-216ENST00000543995 LINC00173Q6ZV60 143 aa9.57□□□□□ -0.88
TNFRSF1A-216ENST00000543995 NDUFA6P56556 154 aa9.56□□□□□ -0.88
TNFRSF1A-216ENST00000543995 FOXI1Q12951 378 aa9.56□□□□□ -0.88
TNFRSF1A-216ENST00000543995 WFDC2Q14508 124 aa9.56□□□□□ -0.88
TNFRSF1A-216ENST00000543995 USP17L23D6RBM5 183 aa9.56□□□□□ -0.88
TNFRSF1A-216ENST00000543995 UBE2D1P51668 147 aa9.56□□□□□ -0.88
TNFRSF1A-216ENST00000543995 PMVKQ15126 192 aa9.55□□□□□ -0.88
TNFRSF1A-216ENST00000543995 COA6Q5JTJ3 125 aaKnown RBP9.55□□□□□ -0.88
TNFRSF1A-216ENST00000543995 SPATA12Q7Z6I5 190 aa9.55□□□□□ -0.88
TNFRSF1A-216ENST00000543995 Q8N814 137 aa9.55□□□□□ -0.88
TNFRSF1A-216ENST00000543995 FAT2Q9NYQ8 4349 aa9.55□□□□□ -0.88
TNFRSF1A-216ENST00000543995 A0A1B0GVY2 172 aa9.54□□□□□ -0.88
TNFRSF1A-216ENST00000543995 MALP21145 153 aa9.54□□□□□ -0.88
TNFRSF1A-216ENST00000543995 C14orf177Q52M58 125 aa9.54□□□□□ -0.88
TNFRSF1A-216ENST00000543995 LINC00242Q5T6M2 205 aa9.54□□□□□ -0.88
TNFRSF1A-216ENST00000543995 CFAP161Q6P656 301 aa9.54□□□□□ -0.88
TNFRSF1A-216ENST00000543995 CST9LQ9H4G1 147 aa9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms