RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 NANOS2P60321 138 aaKnown RBP10.37□□□□□ -0.75
USP3-204ENST00000540797 C9orf153Q5TBE3 101 aa10.37□□□□□ -0.75
USP3-204ENST00000540797 COX7BP24311 80 aa10.37□□□□□ -0.75
USP3-204ENST00000540797 C11orf21Q9P2W6 132 aa10.37□□□□□ -0.75
USP3-204ENST00000540797 NDUFB1O75438 58 aa10.37□□□□□ -0.75
USP3-204ENST00000540797 RNF185Q96GF1 192 aa10.37□□□□□ -0.75
USP3-204ENST00000540797 IGLV1-51P01701 117 aa10.37□□□□□ -0.75
USP3-204ENST00000540797 RBX1P62877 108 aa10.37□□□□□ -0.75
USP3-204ENST00000540797 LY6G6CO95867 125 aa10.36□□□□□ -0.75
USP3-204ENST00000540797 LOC100131303A0A0U1RQF7 123 aa10.36□□□□□ -0.75
USP3-204ENST00000540797 CRYBA4P53673 196 aa10.36□□□□□ -0.75
USP3-204ENST00000540797 MIAQ16674 131 aa10.36□□□□□ -0.75
USP3-204ENST00000540797 TNRC6BQ9UPQ9 1833 aaKnown RBP10.36□□□□□ -0.75
USP3-204ENST00000540797 NPSP0C0P6 89 aa10.36□□□□□ -0.75
USP3-204ENST00000540797 SPATA12Q7Z6I5 190 aa10.36□□□□□ -0.75
USP3-204ENST00000540797 HIGD2AQ9BW72 106 aa10.36□□□□□ -0.75
USP3-204ENST00000540797 ABCA12Q86UK0 2595 aa10.36□□□□□ -0.75
USP3-204ENST00000540797 CLUHP3Q96NS8 147 aa10.35□□□□□ -0.75
USP3-204ENST00000540797 A0A0J9YXY3 114 aa10.35□□□□□ -0.75
USP3-204ENST00000540797 LINC01620Q4KN68 170 aa10.35□□□□□ -0.75
USP3-204ENST00000540797 LELP1Q5T871 98 aa10.35□□□□□ -0.75
USP3-204ENST00000540797 A0A087WZ39 114 aa10.35□□□□□ -0.75
USP3-204ENST00000540797 C9orf85Q96MD7 179 aa10.35□□□□□ -0.75
USP3-204ENST00000540797 TRBV6-5A0A0K0K1A5 114 aa10.34□□□□□ -0.75
USP3-204ENST00000540797 HCFC1P51610 2035 aa10.34□□□□□ -0.75
USP3-204ENST00000540797 TRBV27A0A0K0K1C4 114 aa10.34□□□□□ -0.75
USP3-204ENST00000540797 SYCNQ0VAF6 134 aa10.34□□□□□ -0.75
USP3-204ENST00000540797 SPANXCQ9NY87 97 aa10.34□□□□□ -0.75
USP3-204ENST00000540797 C2CD3Q4AC94 2353 aa10.34□□□□□ -0.75
USP3-204ENST00000540797 ZNF22P17026 224 aaPredicted RBP10.34□□□□□ -0.75
USP3-204ENST00000540797 NREPQ16612 68 aa10.33□□□□□ -0.76
USP3-204ENST00000540797 CITED1Q99966 193 aa10.33□□□□□ -0.76
USP3-204ENST00000540797 CLEC2BQ92478 149 aa10.33□□□□□ -0.76
USP3-204ENST00000540797 RAI1Q7Z5J4 1906 aaPredicted RBP10.33□□□□□ -0.76
USP3-204ENST00000540797 TLN2Q9Y4G6 2542 aa10.33□□□□□ -0.76
USP3-204ENST00000540797 DSCAML1Q8TD84 2053 aa10.32□□□□□ -0.76
USP3-204ENST00000540797 U3KQK5 164 aa10.32□□□□□ -0.76
USP3-204ENST00000540797 LRCOL1A6NCL2 159 aa10.32□□□□□ -0.76
USP3-204ENST00000540797 ZNF580Q9UK33 172 aa10.32□□□□□ -0.76
USP3-204ENST00000540797 USP9XQ93008 2570 aaPredicted RBP10.32□□□□□ -0.76
USP3-204ENST00000540797 RETNQ9HD89 108 aa10.32□□□□□ -0.76
USP3-204ENST00000540797 MRGPRG-AS1Q2M3A8 158 aa10.32□□□□□ -0.76
USP3-204ENST00000540797 TMEM223A0PJW6 202 aa10.31□□□□□ -0.76
USP3-204ENST00000540797 JMJD7-PLA2G4BH0Y9G9 81 aa10.31□□□□□ -0.76
USP3-204ENST00000540797 FAM19A1Q7Z5A9 133 aa10.31□□□□□ -0.76
USP3-204ENST00000540797 SPANXDQ9BXN6 97 aa10.31□□□□□ -0.76
USP3-204ENST00000540797 TSHBP01222 138 aa10.31□□□□□ -0.76
USP3-204ENST00000540797 ACYP1P07311 99 aa10.31□□□□□ -0.76
USP3-204ENST00000540797 FAM19A5Q7Z5A7 132 aaPredicted RBP10.31□□□□□ -0.76
USP3-204ENST00000540797 BRI3O95415 125 aa10.31□□□□□ -0.76
USP3-204ENST00000540797 XAGE1AQ9HD64 81 aa10.31□□□□□ -0.76
USP3-204ENST00000540797 PYGO1Q9Y3Y4 419 aa10.3□□□□□ -0.76
USP3-204ENST00000540797 ZNF462Q96JM2 2506 aa10.3□□□□□ -0.76
USP3-204ENST00000540797 IBA57-AS1B1ANH7 110 aa10.3□□□□□ -0.76
USP3-204ENST00000540797 CD164L2Q6UWJ8 174 aa10.3□□□□□ -0.76
USP3-204ENST00000540797 ATG2AQ2TAZ0 1938 aa10.3□□□□□ -0.76
USP3-204ENST00000540797 RBM3P98179 157 aaKnown RBP10.29□□□□□ -0.76
USP3-204ENST00000540797 ADAMTS20P59510 1910 aa10.29□□□□□ -0.76
USP3-204ENST00000540797 TMEM256-PLSCR3K7ERE1 68 aa10.29□□□□□ -0.76
USP3-204ENST00000540797 MRPS12O15235 138 aaKnown RBP10.29□□□□□ -0.76
USP3-204ENST00000540797 NRACQ8N912 160 aa10.28□□□□□ -0.76
USP3-204ENST00000540797 CENPFP49454 3210 aa10.28□□□□□ -0.76
USP3-204ENST00000540797 C7orf33Q8WU49 177 aa10.28□□□□□ -0.76
USP3-204ENST00000540797 CPAMD8Q8IZJ3 1885 aa10.28□□□□□ -0.76
USP3-204ENST00000540797 PIK3CD-AS1Q5SR53 167 aa10.28□□□□□ -0.76
USP3-204ENST00000540797 NUPR2A6NF83 97 aa10.27□□□□□ -0.77
USP3-204ENST00000540797 LINC00959A0A1B0GUT2 108 aa10.27□□□□□ -0.77
USP3-204ENST00000540797 UBE2D3P61077 147 aa10.26□□□□□ -0.77
USP3-204ENST00000540797 UBE2D2P62837 147 aa10.26□□□□□ -0.77
USP3-204ENST00000540797 TRBV10-2A0A0K0K1G8 114 aa10.26□□□□□ -0.77
USP3-204ENST00000540797 LINC00526Q96FQ7 95 aa10.26□□□□□ -0.77
USP3-204ENST00000540797 EML5Q05BV3 1969 aa10.25□□□□□ -0.77
USP3-204ENST00000540797 A0A096LNI7 61 aa10.25□□□□□ -0.77
USP3-204ENST00000540797 POLR2KP53803 58 aaKnown RBP10.25□□□□□ -0.77
USP3-204ENST00000540797 UBE2D4Q9Y2X8 147 aa10.25□□□□□ -0.77
USP3-204ENST00000540797 GOLGB1Q14789 3259 aaKnown RBP10.25□□□□□ -0.77
USP3-204ENST00000540797 A0A0B4J2C4 111 aa10.25□□□□□ -0.77
USP3-204ENST00000540797 TEN1Q86WV5 123 aa10.24□□□□□ -0.77
USP3-204ENST00000540797 USP9YO00507 2555 aaPredicted RBP10.24□□□□□ -0.77
USP3-204ENST00000540797 DOPEY1Q5JWR5 2465 aa10.24□□□□□ -0.77
USP3-204ENST00000540797 LINC00308Q8TCZ7 52 aa10.24□□□□□ -0.77
USP3-204ENST00000540797 LRRK2Q5S007 2527 aa10.24□□□□□ -0.77
USP3-204ENST00000540797 IGLV4-69A0A075B6H9 119 aa10.24□□□□□ -0.77
USP3-204ENST00000540797 H3BT86 120 aa10.24□□□□□ -0.77
USP3-204ENST00000540797 C1orf158Q8N1D5 194 aa10.23□□□□□ -0.77
USP3-204ENST00000540797 SPANXB1Q9NS25 103 aaPredicted RBP10.23□□□□□ -0.77
USP3-204ENST00000540797 IGKV3D-7A0A0C4DH55 119 aa10.23□□□□□ -0.77
USP3-204ENST00000540797 TAX1BP3O14907 124 aa10.23□□□□□ -0.77
USP3-204ENST00000540797 MRPS36P82909 103 aaKnown RBP10.23□□□□□ -0.77
USP3-204ENST00000540797 FASNP49327 2511 aaKnown RBP10.22□□□□□ -0.77
USP3-204ENST00000540797 H0Y9J4 135 aa10.22□□□□□ -0.77
USP3-204ENST00000540797 COL4A2P08572 1712 aa10.22□□□□□ -0.77
USP3-204ENST00000540797 FN1P02751 2386 aaKnown RBP10.22□□□□□ -0.77
USP3-204ENST00000540797 IGKV2D-26A0A0A0MRZ7 120 aa10.22□□□□□ -0.77
USP3-204ENST00000540797 PDE6GP18545 87 aa10.22□□□□□ -0.77
USP3-204ENST00000540797 WFDC2Q14508 124 aa10.22□□□□□ -0.77
USP3-204ENST00000540797 A8MZ25 164 aa10.22□□□□□ -0.77
USP3-204ENST00000540797 Q6ZTC4 211 aa10.21□□□□□ -0.77
USP3-204ENST00000540797 GAS8-AS1O95177 125 aa10.21□□□□□ -0.78
USP3-204ENST00000540797 CNFNQ9BYD5 112 aa10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms