RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 FCER1GP30273 86 aa10.38□□□□□ -0.75
RPAIN-206ENST00000539417 RPL32P62910 135 aaKnown RBP10.38□□□□□ -0.75
RPAIN-206ENST00000539417 MIAQ16674 131 aa10.38□□□□□ -0.75
RPAIN-206ENST00000539417 AMMECR1LQ6DCA0 310 aa10.38□□□□□ -0.75
RPAIN-206ENST00000539417 Q8N814 137 aa10.38□□□□□ -0.75
RPAIN-206ENST00000539417 RMI2Q96E14 147 aa10.38□□□□□ -0.75
RPAIN-206ENST00000539417 C1orf43Q9BWL3 253 aa10.38□□□□□ -0.75
RPAIN-206ENST00000539417 IGKV3OR2-268A0A0C4DH90 116 aa10.37□□□□□ -0.75
RPAIN-206ENST00000539417 H7C423 109 aa10.37□□□□□ -0.75
RPAIN-206ENST00000539417 PHOX2AO14813 284 aa10.37□□□□□ -0.75
RPAIN-206ENST00000539417 TRGC2P03986 189 aa10.37□□□□□ -0.75
RPAIN-206ENST00000539417 LOC389332A0A1B0GUA5 103 aa10.36□□□□□ -0.75
RPAIN-206ENST00000539417 EREGO14944 169 aa10.36□□□□□ -0.75
RPAIN-206ENST00000539417 KIR2DL4Q99706 377 aa10.36□□□□□ -0.75
RPAIN-206ENST00000539417 HLA-DQA1P01909 254 aa10.36□□□□□ -0.75
RPAIN-206ENST00000539417 RPL39P62891 51 aaKnown RBP10.36□□□□□ -0.75
RPAIN-206ENST00000539417 FABP9Q0Z7S8 132 aa10.36□□□□□ -0.75
RPAIN-206ENST00000539417 COX11Q9Y6N1 276 aa10.36□□□□□ -0.75
RPAIN-206ENST00000539417 HIST1H2BKO60814 126 aa10.35□□□□□ -0.75
RPAIN-206ENST00000539417 HIST1H2BJP06899 126 aa10.35□□□□□ -0.75
RPAIN-206ENST00000539417 HIST1H2BOP23527 126 aa10.35□□□□□ -0.75
RPAIN-206ENST00000539417 HIST1H2BBP33778 126 aa10.35□□□□□ -0.75
RPAIN-206ENST00000539417 AKR1D1P51857 326 aa10.35□□□□□ -0.75
RPAIN-206ENST00000539417 HIST1H2BDP58876 126 aa10.35□□□□□ -0.75
RPAIN-206ENST00000539417 HIST1H2BCP62807 126 aa10.35□□□□□ -0.75
RPAIN-206ENST00000539417 HIST2H2BEQ16778 126 aa10.35□□□□□ -0.75
RPAIN-206ENST00000539417 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.35□□□□□ -0.75
RPAIN-206ENST00000539417 MRPL52Q86TS9 123 aaKnown RBP10.35□□□□□ -0.75
RPAIN-206ENST00000539417 HIST1H2BHQ93079 126 aa10.35□□□□□ -0.75
RPAIN-206ENST00000539417 HIST1H2BNQ99877 126 aa10.35□□□□□ -0.75
RPAIN-206ENST00000539417 HIST1H2BMQ99879 126 aa10.35□□□□□ -0.75
RPAIN-206ENST00000539417 PGPEP1Q9NXJ5 209 aa10.35□□□□□ -0.75
RPAIN-206ENST00000539417 UBE2D4Q9Y2X8 147 aa10.35□□□□□ -0.75
RPAIN-206ENST00000539417 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.34□□□□□ -0.75
RPAIN-206ENST00000539417 PRSS47A8MTI9 375 aa10.34□□□□□ -0.75
RPAIN-206ENST00000539417 KRTAP10-1P60331 282 aa10.34□□□□□ -0.75
RPAIN-206ENST00000539417 RNASE13Q5GAN3 156 aaKnown RBP10.34□□□□□ -0.75
RPAIN-206ENST00000539417 FAM104AQ969W3 186 aa10.34□□□□□ -0.75
RPAIN-206ENST00000539417 CDC42SE2Q9NRR3 84 aa10.34□□□□□ -0.75
RPAIN-206ENST00000539417 ZNF25P17030 456 aaPredicted RBP10.33□□□□□ -0.76
RPAIN-206ENST00000539417 NDUFA6P56556 154 aa10.33□□□□□ -0.76
RPAIN-206ENST00000539417 GNB1LQ9BYB4 327 aa10.33□□□□□ -0.76
RPAIN-206ENST00000539417 KRTAP17-1Q9BYP8 105 aa10.33□□□□□ -0.76
RPAIN-206ENST00000539417 USP17L23D6RBM5 183 aa10.32□□□□□ -0.76
RPAIN-206ENST00000539417 COX19Q49B96 90 aa10.32□□□□□ -0.76
RPAIN-206ENST00000539417 LCE2DQ5TA82 110 aaPredicted RBP10.32□□□□□ -0.76
RPAIN-206ENST00000539417 OR5A1Q8NGJ0 315 aa10.32□□□□□ -0.76
RPAIN-206ENST00000539417 MAP1LC3AQ9H492 121 aa10.32□□□□□ -0.76
RPAIN-206ENST00000539417 LAMTOR2Q9Y2Q5 125 aa10.32□□□□□ -0.76
RPAIN-206ENST00000539417 IGLV5-52A0A0A0MRZ9 124 aa10.31□□□□□ -0.76
RPAIN-206ENST00000539417 Q6ZUT4 128 aa10.31□□□□□ -0.76
RPAIN-206ENST00000539417 LINC00518Q8N0U6 118 aa10.31□□□□□ -0.76
RPAIN-206ENST00000539417 ZNF664Q8N3J9 261 aa10.31□□□□□ -0.76
RPAIN-206ENST00000539417 NTN5Q8WTR8 489 aaPredicted RBP10.31□□□□□ -0.76
RPAIN-206ENST00000539417 TMEM101Q96IK0 257 aa10.31□□□□□ -0.76
RPAIN-206ENST00000539417 OPRPNQ99935 248 aaPredicted RBP10.31□□□□□ -0.76
RPAIN-206ENST00000539417 TRAV8-4A0A0B4J246 113 aa10.3□□□□□ -0.76
RPAIN-206ENST00000539417 GAGE12HA6NDE8 117 aa10.3□□□□□ -0.76
RPAIN-206ENST00000539417 LINC01620Q4KN68 170 aa10.3□□□□□ -0.76
RPAIN-206ENST00000539417 CDPF1Q6NVV7 123 aa10.3□□□□□ -0.76
RPAIN-206ENST00000539417 Q8N8P6 123 aa10.3□□□□□ -0.76
RPAIN-206ENST00000539417 MRPL18Q9H0U6 180 aaKnown RBP10.3□□□□□ -0.76
RPAIN-206ENST00000539417 TRAPPC1Q9Y5R8 145 aa10.3□□□□□ -0.76
RPAIN-206ENST00000539417 LINC00959A0A1B0GUT2 108 aa10.3□□□□□ -0.76
RPAIN-206ENST00000539417 IFI27P40305 119 aaPredicted RBP10.3□□□□□ -0.76
RPAIN-206ENST00000539417 CHCHD10Q8WYQ3 142 aaPredicted RBP10.3□□□□□ -0.76
RPAIN-206ENST00000539417 ALKBH7Q9BT30 221 aaPredicted RBP10.3□□□□□ -0.76
RPAIN-206ENST00000539417 PRSS1P07477 247 aa10.29□□□□□ -0.76
RPAIN-206ENST00000539417 CSDC2Q9Y534 153 aaKnown RBP10.29□□□□□ -0.76
RPAIN-206ENST00000539417 GCSHP23434 173 aa10.28□□□□□ -0.76
RPAIN-206ENST00000539417 DGAT2L7PQ6IED9 249 aa10.28□□□□□ -0.76
RPAIN-206ENST00000539417 TIMM21Q9BVV7 248 aa10.28□□□□□ -0.76
RPAIN-206ENST00000539417 CCL25O15444 150 aa10.27□□□□□ -0.77
RPAIN-206ENST00000539417 MT-ND6P03923 174 aa10.27□□□□□ -0.77
RPAIN-206ENST00000539417 SMIM6P0DI80 62 aa10.27□□□□□ -0.77
RPAIN-206ENST00000539417 XCL1P47992 114 aa10.27□□□□□ -0.77
RPAIN-206ENST00000539417 FOXI1Q12951 378 aa10.27□□□□□ -0.77
RPAIN-206ENST00000539417 COA6Q5JTJ3 125 aaKnown RBP10.27□□□□□ -0.77
RPAIN-206ENST00000539417 S100A2P29034 98 aa10.26□□□□□ -0.77
RPAIN-206ENST00000539417 TMEM18Q96B42 140 aa10.26□□□□□ -0.77
RPAIN-206ENST00000539417 HAMPP81172 84 aa10.25□□□□□ -0.77
RPAIN-206ENST00000539417 HIST3H2BBQ8N257 126 aa10.25□□□□□ -0.77
RPAIN-206ENST00000539417 C15orf56Q8N910 161 aa10.25□□□□□ -0.77
RPAIN-206ENST00000539417 FAM30AQ9NZY2 134 aa10.25□□□□□ -0.77
RPAIN-206ENST00000539417 C12orf57Q99622 126 aa10.24□□□□□ -0.77
RPAIN-206ENST00000539417 NXT2Q9NPJ8 142 aaKnown RBP10.24□□□□□ -0.77
RPAIN-206ENST00000539417 SPANXA1Q9NS26 97 aa10.24□□□□□ -0.77
RPAIN-206ENST00000539417 FAT1Q14517 4588 aa10.24□□□□□ -0.77
RPAIN-206ENST00000539417 TRAV13-1A0A0B4J241 112 aa10.23□□□□□ -0.77
RPAIN-206ENST00000539417 SLPIP03973 132 aa10.23□□□□□ -0.77
RPAIN-206ENST00000539417 XGP55808 180 aa10.23□□□□□ -0.77
RPAIN-206ENST00000539417 ZC2HC1BQ5TFG8 222 aa10.23□□□□□ -0.77
RPAIN-206ENST00000539417 C2orf66Q6UXQ4 117 aa10.23□□□□□ -0.77
RPAIN-206ENST00000539417 IGLV4-3A0A075B6K6 122 aa10.23□□□□□ -0.77
RPAIN-206ENST00000539417 CDK2AP2O75956 126 aa10.23□□□□□ -0.77
RPAIN-206ENST00000539417 MRPS36P82909 103 aaKnown RBP10.22□□□□□ -0.77
RPAIN-206ENST00000539417 SS18Q15532 418 aa10.22□□□□□ -0.77
RPAIN-206ENST00000539417 HIGD2BQ4VC39 106 aa10.22□□□□□ -0.77
RPAIN-206ENST00000539417 C14orf177Q52M58 125 aa10.22□□□□□ -0.77
RPAIN-206ENST00000539417 PRSS3P2Q8NHM4 247 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms