RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 UBE2D2P62837 147 aa7.78□□□□□ -1.16
CLIP1-210ENST00000538120 TMEM170BQ5T4T1 132 aa7.78□□□□□ -1.16
CLIP1-210ENST00000538120 C11orf72Q8NBR9 251 aa7.78□□□□□ -1.16
CLIP1-210ENST00000538120 CARD19Q96LW7 228 aa7.78□□□□□ -1.16
CLIP1-210ENST00000538120 INSP01308 110 aa7.78□□□□□ -1.16
CLIP1-210ENST00000538120 CFC1BP0CG36 223 aa7.78□□□□□ -1.16
CLIP1-210ENST00000538120 CFC1P0CG37 223 aa7.78□□□□□ -1.16
CLIP1-210ENST00000538120 LINC01587Q99440 93 aa7.78□□□□□ -1.16
CLIP1-210ENST00000538120 OPRPNQ99935 248 aaPredicted RBP7.78□□□□□ -1.16
CLIP1-210ENST00000538120 XCL2Q9UBD3 114 aa7.78□□□□□ -1.16
CLIP1-210ENST00000538120 SETD2Q9BYW2 2564 aaPredicted RBP7.78□□□□□ -1.16
CLIP1-210ENST00000538120 MT-ATP8P03928 68 aa7.77□□□□□ -1.17
CLIP1-210ENST00000538120 ZNF56Q15929 161 aa7.77□□□□□ -1.17
CLIP1-210ENST00000538120 C1orf158Q8N1D5 194 aa7.77□□□□□ -1.17
CLIP1-210ENST00000538120 C19orf73Q9NVV2 129 aa7.77□□□□□ -1.17
CLIP1-210ENST00000538120 NOTCH2Q04721 2471 aa7.77□□□□□ -1.17
CLIP1-210ENST00000538120 NIPBLQ6KC79 2804 aaeCLIP7.77□□□□□ -1.17
CLIP1-210ENST00000538120 SDHAF1A6NFY7 115 aa7.77□□□□□ -1.17
CLIP1-210ENST00000538120 VCYO14598 125 aa7.77□□□□□ -1.17
CLIP1-210ENST00000538120 IGHV3-30P01768 117 aa7.77□□□□□ -1.17
CLIP1-210ENST00000538120 IGHV3-30-5P0DP03 117 aa7.77□□□□□ -1.17
CLIP1-210ENST00000538120 PMVKQ15126 192 aa7.77□□□□□ -1.17
CLIP1-210ENST00000538120 BEAN1Q3B7T3 259 aa7.77□□□□□ -1.17
CLIP1-210ENST00000538120 Q8N3U1 123 aa7.77□□□□□ -1.17
CLIP1-210ENST00000538120 SETXQ7Z333 2677 aaKnown RBP7.77□□□□□ -1.17
CLIP1-210ENST00000538120 TRBV27A0A0K0K1C4 114 aa7.76□□□□□ -1.17
CLIP1-210ENST00000538120 M0R2P5 195 aa7.76□□□□□ -1.17
CLIP1-210ENST00000538120 ZNF415Q09FC8 603 aa7.76□□□□□ -1.17
CLIP1-210ENST00000538120 TMEM126AQ9H061 195 aa7.76□□□□□ -1.17
CLIP1-210ENST00000538120 WNK1Q9H4A3 2382 aa7.76□□□□□ -1.17
CLIP1-210ENST00000538120 XGP55808 180 aa7.76□□□□□ -1.17
CLIP1-210ENST00000538120 AMELXQ99217 191 aa7.76□□□□□ -1.17
CLIP1-210ENST00000538120 IGHV3-64A0A075B6Q5 118 aa7.75□□□□□ -1.17
CLIP1-210ENST00000538120 GIG44P09565 113 aaPredicted RBP7.75□□□□□ -1.17
CLIP1-210ENST00000538120 PIK3CD-AS1Q5SR53 167 aa7.75□□□□□ -1.17
CLIP1-210ENST00000538120 ATP6V0E2Q8NHE4 81 aa7.75□□□□□ -1.17
CLIP1-210ENST00000538120 KIR2DL4Q99706 377 aa7.75□□□□□ -1.17
CLIP1-210ENST00000538120 WFDC10AQ9H1F0 79 aa7.75□□□□□ -1.17
CLIP1-210ENST00000538120 IGHV3-73A0A0B4J1V6 119 aa7.75□□□□□ -1.17
CLIP1-210ENST00000538120 SPINK8P0C7L1 97 aa7.75□□□□□ -1.17
CLIP1-210ENST00000538120 HERVK_113P61574 105 aa7.75□□□□□ -1.17
CLIP1-210ENST00000538120 SLC25A29Q8N8R3 303 aa7.75□□□□□ -1.17
CLIP1-210ENST00000538120 OR13C6PQ8NH95 151 aa7.75□□□□□ -1.17
CLIP1-210ENST00000538120 EDA2RQ9HAV5 297 aa7.75□□□□□ -1.17
CLIP1-210ENST00000538120 Q6ZSN1 163 aa7.74□□□□□ -1.17
CLIP1-210ENST00000538120 LINC00482Q8N8I6 264 aa7.74□□□□□ -1.17
CLIP1-210ENST00000538120 P0DMU3 169 aa7.74□□□□□ -1.17
CLIP1-210ENST00000538120 FAM231AP0DMU4 169 aa7.74□□□□□ -1.17
CLIP1-210ENST00000538120 FAM231CP0DMU5 169 aa7.74□□□□□ -1.17
CLIP1-210ENST00000538120 CMC4P56277 68 aaPredicted RBP7.74□□□□□ -1.17
CLIP1-210ENST00000538120 Q6ZUT4 128 aa7.74□□□□□ -1.17
CLIP1-210ENST00000538120 C10orf126Q8N4M7 172 aa7.74□□□□□ -1.17
CLIP1-210ENST00000538120 IL17DQ8TAD2 202 aa7.74□□□□□ -1.17
CLIP1-210ENST00000538120 A8MWV9 139 aa7.73□□□□□ -1.17
CLIP1-210ENST00000538120 J3QQQ9 107 aa7.73□□□□□ -1.17
CLIP1-210ENST00000538120 SCGB1C2P0DMR2 95 aa7.73□□□□□ -1.17
CLIP1-210ENST00000538120 TEN1Q86WV5 123 aa7.73□□□□□ -1.17
CLIP1-210ENST00000538120 Q9UF83 564 aa7.73□□□□□ -1.17
CLIP1-210ENST00000538120 H7C2G1 150 aa7.73□□□□□ -1.17
CLIP1-210ENST00000538120 PAPPA-AS1Q5QFB9 102 aa7.73□□□□□ -1.17
CLIP1-210ENST00000538120 ANKRD29Q8N6D5 301 aa7.73□□□□□ -1.17
CLIP1-210ENST00000538120 TIMM17AQ99595 171 aa7.73□□□□□ -1.17
CLIP1-210ENST00000538120 ANAPC13Q9BS18 74 aa7.73□□□□□ -1.17
CLIP1-210ENST00000538120 HIVEP1P15822 2718 aa7.72□□□□□ -1.17
CLIP1-210ENST00000538120 IGHV3OR16-12A0A075B7B8 117 aa7.72□□□□□ -1.17
CLIP1-210ENST00000538120 H3BS24 57 aa7.72□□□□□ -1.17
CLIP1-210ENST00000538120 LINC00336Q6ZUF6 198 aa7.72□□□□□ -1.17
CLIP1-210ENST00000538120 SPATA3Q8NHX4 192 aa7.72□□□□□ -1.17
CLIP1-210ENST00000538120 PPDPFLQ8WWR9 84 aa7.72□□□□□ -1.17
CLIP1-210ENST00000538120 TMEM141Q96I45 108 aa7.72□□□□□ -1.17
CLIP1-210ENST00000538120 RETNQ9HD89 108 aa7.72□□□□□ -1.17
CLIP1-210ENST00000538120 FN1P02751 2386 aaKnown RBP7.72□□□□□ -1.17
CLIP1-210ENST00000538120 CRLF1O75462 422 aa7.72□□□□□ -1.17
CLIP1-210ENST00000538120 PRO1854Q9UHT4 67 aa7.72□□□□□ -1.17
CLIP1-210ENST00000538120 NSD1Q96L73 2696 aaPredicted RBP7.71□□□□□ -1.17
CLIP1-210ENST00000538120 LGALS3P17931 250 aaKnown RBP7.71□□□□□ -1.17
CLIP1-210ENST00000538120 X6R8D5 127 aa7.71□□□□□ -1.17
CLIP1-210ENST00000538120 GAGE12JA6NER3 117 aa7.71□□□□□ -1.18
CLIP1-210ENST00000538120 I3L3M4 83 aa7.71□□□□□ -1.18
CLIP1-210ENST00000538120 GAGE7O76087 117 aa7.71□□□□□ -1.18
CLIP1-210ENST00000538120 GAGE12FP0CL80 117 aa7.71□□□□□ -1.18
CLIP1-210ENST00000538120 GAGE12GP0CL81 117 aa7.71□□□□□ -1.18
CLIP1-210ENST00000538120 GAGE12IP0CL82 117 aa7.71□□□□□ -1.18
CLIP1-210ENST00000538120 GAGE4Q13068 117 aa7.71□□□□□ -1.18
CLIP1-210ENST00000538120 RHOHQ15669 191 aa7.71□□□□□ -1.18
CLIP1-210ENST00000538120 SBSPONQ8IVN8 264 aa7.71□□□□□ -1.18
CLIP1-210ENST00000538120 RPL35AP18077 110 aaKnown RBP7.7□□□□□ -1.18
CLIP1-210ENST00000538120 ZFAND6Q6FIF0 208 aa7.7□□□□□ -1.18
CLIP1-210ENST00000538120 CSNK1G2-AS1Q8NCQ2 148 aa7.7□□□□□ -1.18
CLIP1-210ENST00000538120 TRBV20-1A0A075B6N2 111 aa7.7□□□□□ -1.18
CLIP1-210ENST00000538120 A0A0J9YXV3 536 aa7.7□□□□□ -1.18
CLIP1-210ENST00000538120 MUSTN1Q8IVN3 82 aa7.7□□□□□ -1.18
CLIP1-210ENST00000538120 NACAE9PAV3 2078 aa7.69□□□□□ -1.18
CLIP1-210ENST00000538120 TINCRA0A1B0GVN0 87 aa7.69□□□□□ -1.18
CLIP1-210ENST00000538120 TMEM223A0PJW6 202 aa7.69□□□□□ -1.18
CLIP1-210ENST00000538120 C9JAW5 83 aa7.69□□□□□ -1.18
CLIP1-210ENST00000538120 IGHV3-33P01772 117 aa7.69□□□□□ -1.18
CLIP1-210ENST00000538120 ZNF22P17026 224 aaPredicted RBP7.69□□□□□ -1.18
CLIP1-210ENST00000538120 LYRM7Q5U5X0 104 aa7.69□□□□□ -1.18
CLIP1-210ENST00000538120 RHODO00212 210 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms