RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 FAM74A4Q5TZK3 123 aa8.07□□□□□ -1.12
CLSTN3-207ENST00000537408 LENEPQ9Y5L5 61 aa8.07□□□□□ -1.12
CLSTN3-207ENST00000537408 A0A087WVE0 104 aa8.07□□□□□ -1.12
CLSTN3-207ENST00000537408 TIMM17BO60830 172 aa8.07□□□□□ -1.12
CLSTN3-207ENST00000537408 DEFB112Q30KQ8 113 aa8.07□□□□□ -1.12
CLSTN3-207ENST00000537408 C9orf47Q6ZRZ4 202 aa8.07□□□□□ -1.12
CLSTN3-207ENST00000537408 GPHB5Q86YW7 130 aa8.07□□□□□ -1.12
CLSTN3-207ENST00000537408 C11orf44Q8N8P7 122 aa8.07□□□□□ -1.12
CLSTN3-207ENST00000537408 IGHV1-58A0A0C4DH39 117 aa8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 POLR2KP53803 58 aaKnown RBP8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 IGHV4OR15-8A0A075B7B6 117 aa8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 A0A087WW49 117 aa8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 FAM223BA6NKX1 122 aa8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 LITAFQ99732 161 aa8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 SNRPD3P62318 126 aaKnown RBP8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 C9orf139Q6ZV77 190 aa8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 FAM223AQ8IWN6 122 aa8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 LY6G5BQ8NDX9 201 aa8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 FANCD2OSQ96PS1 177 aa8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 ZFAND3Q9H8U3 227 aa8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 COL27A1Q8IZC6 1860 aaPredicted RBP8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 A0A1W2PRX2 142 aa8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 CD28P10747 220 aa8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 ADAMTSL4-AS1Q5T5F5 129 aa8.06□□□□□ -1.12
CLSTN3-207ENST00000537408 SOCS3O14543 225 aa8.05□□□□□ -1.12
CLSTN3-207ENST00000537408 SUMO4Q6EEV6 95 aa8.05□□□□□ -1.12
CLSTN3-207ENST00000537408 ATP5EP2Q5VTU8 51 aa8.05□□□□□ -1.12
CLSTN3-207ENST00000537408 OPRPNQ99935 248 aaPredicted RBP8.04□□□□□ -1.12
CLSTN3-207ENST00000537408 XCL1P47992 114 aa8.04□□□□□ -1.12
CLSTN3-207ENST00000537408 XCL2Q9UBD3 114 aa8.04□□□□□ -1.12
CLSTN3-207ENST00000537408 RBM3P98179 157 aaKnown RBP8.04□□□□□ -1.12
CLSTN3-207ENST00000537408 IGLV11-55A0A075B6I3 123 aa8.03□□□□□ -1.12
CLSTN3-207ENST00000537408 RNASE4P34096 147 aaKnown RBP8.03□□□□□ -1.12
CLSTN3-207ENST00000537408 PLXNB1O43157 2135 aa8.03□□□□□ -1.12
CLSTN3-207ENST00000537408 TRBV27A0A0K0K1C4 114 aa8.03□□□□□ -1.12
CLSTN3-207ENST00000537408 LINC01561Q8N1V8 128 aa8.03□□□□□ -1.12
CLSTN3-207ENST00000537408 CLPSL1A2RUU4 121 aa8.02□□□□□ -1.13
CLSTN3-207ENST00000537408 IGHV4-38-2P0DP08 117 aa8.02□□□□□ -1.13
CLSTN3-207ENST00000537408 C14orf132Q9NPU4 83 aa8.02□□□□□ -1.13
CLSTN3-207ENST00000537408 IGHV3OR16-12A0A075B7B8 117 aa8.02□□□□□ -1.13
CLSTN3-207ENST00000537408 NXPH4O95158 308 aa8.02□□□□□ -1.13
CLSTN3-207ENST00000537408 FAM110DQ8TAY7 271 aaPredicted RBP8.02□□□□□ -1.13
CLSTN3-207ENST00000537408 UBE2D4Q9Y2X8 147 aa8.02□□□□□ -1.13
CLSTN3-207ENST00000537408 NDPQ00604 133 aa8.01□□□□□ -1.13
CLSTN3-207ENST00000537408 C20orf203Q8NBC4 194 aa8.01□□□□□ -1.13
CLSTN3-207ENST00000537408 ZNF580Q9UK33 172 aa8.01□□□□□ -1.13
CLSTN3-207ENST00000537408 TRAV23DV6A0A075B6W5 121 aa8.01□□□□□ -1.13
CLSTN3-207ENST00000537408 TRBV6-5A0A0K0K1A5 114 aa8.01□□□□□ -1.13
CLSTN3-207ENST00000537408 IGHV4-59P01825 116 aa8.01□□□□□ -1.13
CLSTN3-207ENST00000537408 ATP5EP56381 51 aaPredicted RBP8.01□□□□□ -1.13
CLSTN3-207ENST00000537408 CTSGP08311 255 aa8.01□□□□□ -1.13
CLSTN3-207ENST00000537408 HILS1P60008 231 aa8.01□□□□□ -1.13
CLSTN3-207ENST00000537408 IGLV4-3A0A075B6K6 122 aa8□□□□□ -1.13
CLSTN3-207ENST00000537408 A0A087WWL8 130 aa8□□□□□ -1.13
CLSTN3-207ENST00000537408 ZFP36P26651 326 aaKnown RBP8□□□□□ -1.13
CLSTN3-207ENST00000537408 MGAQ8IWI9 3026 aa8□□□□□ -1.13
CLSTN3-207ENST00000537408 DNAJC9-AS1A6NH13 148 aa8□□□□□ -1.13
CLSTN3-207ENST00000537408 LINC00846Q9NV44 126 aa8□□□□□ -1.13
CLSTN3-207ENST00000537408 WDFY4Q6ZS81 3184 aa8□□□□□ -1.13
CLSTN3-207ENST00000537408 ATP6V0E1O15342 81 aa8□□□□□ -1.13
CLSTN3-207ENST00000537408 TRBV12-3P01733 135 aa8□□□□□ -1.13
CLSTN3-207ENST00000537408 LINC00308Q8TCZ7 52 aa8□□□□□ -1.13
CLSTN3-207ENST00000537408 Q9HAA7 133 aa7.99□□□□□ -1.13
CLSTN3-207ENST00000537408 MAST4O15021 2626 aa7.99□□□□□ -1.13
CLSTN3-207ENST00000537408 CENPEQ02224 2701 aa7.98□□□□□ -1.13
CLSTN3-207ENST00000537408 EPM2AB3EWF7 344 aa7.98□□□□□ -1.13
CLSTN3-207ENST00000537408 G3V318 75 aa7.98□□□□□ -1.13
CLSTN3-207ENST00000537408 GNRH2O43555 120 aa7.98□□□□□ -1.13
CLSTN3-207ENST00000537408 PRR9Q5T870 116 aa7.98□□□□□ -1.13
CLSTN3-207ENST00000537408 GCN1Q92616 2671 aaKnown RBP7.98□□□□□ -1.13
CLSTN3-207ENST00000537408 CRPP02741 224 aa7.98□□□□□ -1.13
CLSTN3-207ENST00000537408 TRAV13-2A0A0B4J235 113 aa7.98□□□□□ -1.13
CLSTN3-207ENST00000537408 C6orf226Q5I0X4 101 aa7.98□□□□□ -1.13
CLSTN3-207ENST00000537408 UNC79Q9P2D8 2635 aa7.97□□□□□ -1.13
CLSTN3-207ENST00000537408 TRAV7A0A075B6U4 112 aa7.97□□□□□ -1.13
CLSTN3-207ENST00000537408 NDUFA1O15239 70 aa7.97□□□□□ -1.13
CLSTN3-207ENST00000537408 SIRPDQ9H106 197 aa7.97□□□□□ -1.13
CLSTN3-207ENST00000537408 NDUFC1O43677 76 aa7.97□□□□□ -1.13
CLSTN3-207ENST00000537408 IGLV1-47P01700 117 aa7.97□□□□□ -1.13
CLSTN3-207ENST00000537408 LAMTOR3Q9UHA4 124 aa7.97□□□□□ -1.13
CLSTN3-207ENST00000537408 F8W735 103 aaPredicted RBP7.96□□□□□ -1.13
CLSTN3-207ENST00000537408 HIST2H2BDQ6DRA6 164 aa7.96□□□□□ -1.13
CLSTN3-207ENST00000537408 A0A0U1RRA0 63 aa7.96□□□□□ -1.14
CLSTN3-207ENST00000537408 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.96□□□□□ -1.14
CLSTN3-207ENST00000537408 FN1P02751 2386 aaKnown RBP7.96□□□□□ -1.14
CLSTN3-207ENST00000537408 BCE1O60756 84 aa7.96□□□□□ -1.14
CLSTN3-207ENST00000537408 BEAN1Q3B7T3 259 aa7.96□□□□□ -1.14
CLSTN3-207ENST00000537408 UBL5Q9BZL1 73 aa7.96□□□□□ -1.14
CLSTN3-207ENST00000537408 HOXD3P31249 432 aaPredicted RBP7.95□□□□□ -1.14
CLSTN3-207ENST00000537408 ZFAND2AQ8N6M9 145 aa7.95□□□□□ -1.14
CLSTN3-207ENST00000537408 KIF25-AS1Q9Y6Z4 181 aa7.95□□□□□ -1.14
CLSTN3-207ENST00000537408 NACAE9PAV3 2078 aa7.95□□□□□ -1.14
CLSTN3-207ENST00000537408 TRBV7-6A0A0J9YX20 115 aa7.95□□□□□ -1.14
CLSTN3-207ENST00000537408 RNASE3P12724 160 aaKnown RBP7.95□□□□□ -1.14
CLSTN3-207ENST00000537408 H0YGX0 51 aa7.95□□□□□ -1.14
CLSTN3-207ENST00000537408 RNASE1P07998 156 aaKnown RBP7.95□□□□□ -1.14
CLSTN3-207ENST00000537408 H7BZZ5 65 aa7.95□□□□□ -1.14
CLSTN3-207ENST00000537408 PMAIP1Q13794 54 aa7.95□□□□□ -1.14
CLSTN3-207ENST00000537408 USMG5Q96IX5 58 aa7.95□□□□□ -1.14
CLSTN3-207ENST00000537408 RPL28P46779 137 aaKnown RBP7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms