RNA–Protein interactions for RNA: ENST00000536823.5

YBX3-206, Transcript of Y-box binding protein 3, human

TSL 2

Gene YBX3, Length 840 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-206	ENST00000536823	ZNF727	A8MUV8	499 aa		4.59	□□□□□ -1.67
YBX3-206	ENST00000536823	SRP19	P09132	144 aa	Known RBP	4.59	□□□□□ -1.67
YBX3-206	ENST00000536823	COTL1	Q14019	142 aa		4.59	□□□□□ -1.67
YBX3-206	ENST00000536823	CLPSL2	Q6UWE3	100 aa		4.59	□□□□□ -1.67
YBX3-206	ENST00000536823	LINC01551	Q86U37	167 aa		4.59	□□□□□ -1.67
YBX3-206	ENST00000536823	TRAV26-2	A0A0B4J265	109 aa		4.58	□□□□□ -1.68
YBX3-206	ENST00000536823		A0A1B0GUV1	79 aa		4.58	□□□□□ -1.68
YBX3-206	ENST00000536823	FAM231B	A6NCW3	169 aa		4.58	□□□□□ -1.68
YBX3-206	ENST00000536823	HLA-DQA1	P01909	254 aa		4.58	□□□□□ -1.68
YBX3-206	ENST00000536823	AMT	P48728	403 aa		4.58	□□□□□ -1.68
YBX3-206	ENST00000536823	FOXA3	P55318	350 aa	Predicted RBP	4.58	□□□□□ -1.68
YBX3-206	ENST00000536823	KRTAP26-1	Q6PEX3	210 aa		4.58	□□□□□ -1.68
YBX3-206	ENST00000536823	LINC00269	Q8N2A0	174 aa		4.58	□□□□□ -1.68
YBX3-206	ENST00000536823	C20orf203	Q8NBC4	194 aa		4.58	□□□□□ -1.68
YBX3-206	ENST00000536823	TSKU	Q8WUA8	353 aa		4.58	□□□□□ -1.68
YBX3-206	ENST00000536823	GFRA4	Q9GZZ7	299 aa		4.58	□□□□□ -1.68
YBX3-206	ENST00000536823	OSTC	Q9NRP0	149 aa		4.58	□□□□□ -1.68
YBX3-206	ENST00000536823	IGLV4-60	A0A075B6I1	120 aa		4.57	□□□□□ -1.68
YBX3-206	ENST00000536823		A0A1B0GUT8	65 aa		4.57	□□□□□ -1.68
YBX3-206	ENST00000536823	HIGD1C	A8MV81	97 aa		4.57	□□□□□ -1.68
YBX3-206	ENST00000536823	UBE2L6	O14933	153 aa		4.57	□□□□□ -1.68
YBX3-206	ENST00000536823	NCR2	O95944	276 aa		4.57	□□□□□ -1.68
YBX3-206	ENST00000536823	SMR3B	P02814	79 aa	Predicted RBP	4.57	□□□□□ -1.68
YBX3-206	ENST00000536823	REG3A	Q06141	175 aa		4.57	□□□□□ -1.68
YBX3-206	ENST00000536823	LINC01620	Q4KN68	170 aa		4.57	□□□□□ -1.68
YBX3-206	ENST00000536823	FAM74A3	Q4VXF1	159 aa		4.57	□□□□□ -1.68
YBX3-206	ENST00000536823	TEX261	Q6UWH6	196 aa		4.57	□□□□□ -1.68
YBX3-206	ENST00000536823	DEFB104A	Q8WTQ1	72 aa		4.57	□□□□□ -1.68
YBX3-206	ENST00000536823	BORCS7	Q96B45	105 aa		4.57	□□□□□ -1.68
YBX3-206	ENST00000536823	RPL39L	Q96EH5	51 aa	Known RBP	4.57	□□□□□ -1.68
YBX3-206	ENST00000536823		V9GYV3	84 aa		4.57	□□□□□ -1.68
YBX3-206	ENST00000536823	HERC1	Q15751	4861 aa		4.56	□□□□□ -1.68
YBX3-206	ENST00000536823	IGKV2D-30	A0A075B6S6	120 aa		4.56	□□□□□ -1.68
YBX3-206	ENST00000536823	TRAV8-4	A0A0B4J246	113 aa		4.56	□□□□□ -1.68
YBX3-206	ENST00000536823	TRBV6-5	A0A0K0K1A5	114 aa		4.56	□□□□□ -1.68
YBX3-206	ENST00000536823	SDHAF1	A6NFY7	115 aa		4.56	□□□□□ -1.68
YBX3-206	ENST00000536823		C9JQL5	133 aa		4.56	□□□□□ -1.68
YBX3-206	ENST00000536823	INAFM2	P0DMQ5	153 aa		4.56	□□□□□ -1.68
YBX3-206	ENST00000536823	TMEM241	Q24JQ0	296 aa		4.56	□□□□□ -1.68
YBX3-206	ENST00000536823	PRR26	Q8N8Z3	221 aa		4.56	□□□□□ -1.68
YBX3-206	ENST00000536823	ISOC2	Q96AB3	205 aa		4.56	□□□□□ -1.68
YBX3-206	ENST00000536823	TMEM191A	Q9H0A3	160 aa		4.56	□□□□□ -1.68
YBX3-206	ENST00000536823	PAM16	Q9Y3D7	125 aa		4.56	□□□□□ -1.68
YBX3-206	ENST00000536823	PKHD1L1	Q86WI1	4243 aa		4.55	□□□□□ -1.68
YBX3-206	ENST00000536823	IGLV10-54	A0A075B6I4	117 aa		4.55	□□□□□ -1.68
YBX3-206	ENST00000536823	APCS	P02743	223 aa		4.55	□□□□□ -1.68
YBX3-206	ENST00000536823	PRSS1	P07477	247 aa		4.55	□□□□□ -1.68
YBX3-206	ENST00000536823	CAMP	P49913	170 aa		4.55	□□□□□ -1.68
YBX3-206	ENST00000536823	RPL23	P62829	140 aa	Known RBP	4.55	□□□□□ -1.68
YBX3-206	ENST00000536823	RIG	Q13278	110 aa		4.55	□□□□□ -1.68
YBX3-206	ENST00000536823	ADIRF	Q15847	76 aa		4.55	□□□□□ -1.68
YBX3-206	ENST00000536823	SCX	Q7RTU7	201 aa		4.55	□□□□□ -1.68
YBX3-206	ENST00000536823	MRAP2	Q96G30	205 aa		4.55	□□□□□ -1.68
YBX3-206	ENST00000536823	RNF185	Q96GF1	192 aa		4.55	□□□□□ -1.68
YBX3-206	ENST00000536823	CHAC1	Q9BUX1	264 aa		4.55	□□□□□ -1.68
YBX3-206	ENST00000536823	NAT8	Q9UHE5	227 aa		4.55	□□□□□ -1.68
YBX3-206	ENST00000536823	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	4.54	□□□□□ -1.68
YBX3-206	ENST00000536823	IGKV2-29	A2NJV5	120 aa	Predicted RBP	4.54	□□□□□ -1.68
YBX3-206	ENST00000536823		H7C423	109 aa		4.54	□□□□□ -1.68
YBX3-206	ENST00000536823	VCY	O14598	125 aa		4.54	□□□□□ -1.68
YBX3-206	ENST00000536823	GAS8-AS1	O95177	125 aa		4.54	□□□□□ -1.68
YBX3-206	ENST00000536823	FGF6	P10767	208 aa		4.54	□□□□□ -1.68
YBX3-206	ENST00000536823	PMCH	P20382	165 aa		4.54	□□□□□ -1.68
YBX3-206	ENST00000536823	PEA15	Q15121	130 aa		4.54	□□□□□ -1.68
YBX3-206	ENST00000536823	AMMECR1L	Q6DCA0	310 aa		4.54	□□□□□ -1.68
YBX3-206	ENST00000536823	AMN1	Q8IY45	258 aa		4.54	□□□□□ -1.68
YBX3-206	ENST00000536823	NUP35	Q8NFH5	326 aa		4.54	□□□□□ -1.68
YBX3-206	ENST00000536823	SMDT1	Q9H4I9	107 aa		4.54	□□□□□ -1.68
YBX3-206	ENST00000536823	ST20	Q9HBF5	79 aa		4.54	□□□□□ -1.68
YBX3-206	ENST00000536823	TRBV27	A0A0K0K1C4	114 aa		4.53	□□□□□ -1.68
YBX3-206	ENST00000536823	SMIM27	A0A1W2PRY6	76 aa		4.53	□□□□□ -1.68
YBX3-206	ENST00000536823		I3L3M4	83 aa		4.53	□□□□□ -1.68
YBX3-206	ENST00000536823	TSHB	P01222	138 aa		4.53	□□□□□ -1.68
YBX3-206	ENST00000536823	ESD	P10768	282 aa		4.53	□□□□□ -1.68
YBX3-206	ENST00000536823	ZNF25	P17030	456 aa	Predicted RBP	4.53	□□□□□ -1.68
YBX3-206	ENST00000536823	RAB4A	P20338	218 aa		4.53	□□□□□ -1.68
YBX3-206	ENST00000536823	RPS10	P46783	165 aa	Known RBP	4.53	□□□□□ -1.68
YBX3-206	ENST00000536823	POLR2K	P53803	58 aa	Known RBP	4.53	□□□□□ -1.68
YBX3-206	ENST00000536823	CNBP	P62633	177 aa	Known RBP	4.53	□□□□□ -1.68
YBX3-206	ENST00000536823	RNASEK	Q6P5S7	137 aa	Known RBP	4.53	□□□□□ -1.68
YBX3-206	ENST00000536823	C9orf163	Q8N9P6	203 aa		4.53	□□□□□ -1.68
YBX3-206	ENST00000536823	TMEM242	Q9NWH2	141 aa		4.53	□□□□□ -1.68
YBX3-206	ENST00000536823	NAT8B	Q9UHF3	227 aa		4.53	□□□□□ -1.68
YBX3-206	ENST00000536823	IGKV3OR2-268	A0A0C4DH90	116 aa		4.52	□□□□□ -1.69
YBX3-206	ENST00000536823		A0A1B0GW15	77 aa		4.52	□□□□□ -1.69
YBX3-206	ENST00000536823	hDV102S1	A0JD36	115 aa		4.52	□□□□□ -1.69
YBX3-206	ENST00000536823	SMKR1	H3BMG3	65 aa		4.52	□□□□□ -1.69
YBX3-206	ENST00000536823	PPP1R17	O96001	155 aa		4.52	□□□□□ -1.69
YBX3-206	ENST00000536823	FAM104B	Q5XKR9	115 aa		4.52	□□□□□ -1.69
YBX3-206	ENST00000536823	MRPL52	Q86TS9	123 aa	Known RBP	4.52	□□□□□ -1.69
YBX3-206	ENST00000536823	C15orf56	Q8N910	161 aa		4.52	□□□□□ -1.69
YBX3-206	ENST00000536823	CIRBP-AS1	Q8TBR5	109 aa		4.52	□□□□□ -1.69
YBX3-206	ENST00000536823	C7orf77	A4D0Y5	90 aa		4.51	□□□□□ -1.69
YBX3-206	ENST00000536823	PPP1R2P9	O14990	202 aa		4.51	□□□□□ -1.69
YBX3-206	ENST00000536823	MRPL51	Q4U2R6	128 aa	Known RBP	4.51	□□□□□ -1.69
YBX3-206	ENST00000536823	OR5A1	Q8NGJ0	315 aa		4.51	□□□□□ -1.69
YBX3-206	ENST00000536823	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	4.51	□□□□□ -1.69
YBX3-206	ENST00000536823	TMEM101	Q96IK0	257 aa		4.51	□□□□□ -1.69
YBX3-206	ENST00000536823	BTF3L4	Q96K17	158 aa		4.51	□□□□□ -1.69
YBX3-206	ENST00000536823	IGHV3-64	A0A075B6Q5	118 aa		4.5	□□□□□ -1.69

Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms