RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 IGLV2-33A0A075B6J2 118 aaPredicted RBP8.46□□□□□ -1.06
VPS28-216ENST00000533806 TRAV9-1A0A075B6T8 112 aa8.46□□□□□ -1.06
VPS28-216ENST00000533806 HLA-DQA1P01909 254 aa8.46□□□□□ -1.06
VPS28-216ENST00000533806 PRSS1P07477 247 aa8.46□□□□□ -1.06
VPS28-216ENST00000533806 FCER1GP30273 86 aa8.46□□□□□ -1.06
VPS28-216ENST00000533806 OR5A1Q8NGJ0 315 aa8.46□□□□□ -1.06
VPS28-216ENST00000533806 PRELID3AQ96N28 172 aa8.46□□□□□ -1.06
VPS28-216ENST00000533806 UBE2D4Q9Y2X8 147 aa8.46□□□□□ -1.06
VPS28-216ENST00000533806 FAT1Q14517 4588 aa8.46□□□□□ -1.06
VPS28-216ENST00000533806 TCAPO15273 167 aa8.45□□□□□ -1.06
VPS28-216ENST00000533806 C14orf177Q52M58 125 aa8.45□□□□□ -1.06
VPS28-216ENST00000533806 Q6ZSA8 131 aa8.45□□□□□ -1.06
VPS28-216ENST00000533806 FAM104AQ969W3 186 aa8.45□□□□□ -1.06
VPS28-216ENST00000533806 KRTAP4-5Q9BYR2 181 aa8.45□□□□□ -1.06
VPS28-216ENST00000533806 FAM30AQ9NZY2 134 aa8.45□□□□□ -1.06
VPS28-216ENST00000533806 LAMTOR2Q9Y2Q5 125 aa8.45□□□□□ -1.06
VPS28-216ENST00000533806 ZNF664Q8N3J9 261 aa8.44□□□□□ -1.06
VPS28-216ENST00000533806 CLRN3Q8NCR9 226 aa8.44□□□□□ -1.06
VPS28-216ENST00000533806 TMEM101Q96IK0 257 aa8.44□□□□□ -1.06
VPS28-216ENST00000533806 TIMM21Q9BVV7 248 aa8.44□□□□□ -1.06
VPS28-216ENST00000533806 LINC00959A0A1B0GUT2 108 aa8.43□□□□□ -1.06
VPS28-216ENST00000533806 RHEBQ15382 184 aa8.43□□□□□ -1.06
VPS28-216ENST00000533806 DGAT2L7PQ6IED9 249 aa8.43□□□□□ -1.06
VPS28-216ENST00000533806 Q8N1X5 172 aa8.43□□□□□ -1.06
VPS28-216ENST00000533806 CHCHD10Q8WYQ3 142 aaPredicted RBP8.43□□□□□ -1.06
VPS28-216ENST00000533806 IGKV3OR2-268A0A0C4DH90 116 aa8.42□□□□□ -1.06
VPS28-216ENST00000533806 GAGE12HA6NDE8 117 aa8.42□□□□□ -1.06
VPS28-216ENST00000533806 FOXI1Q12951 378 aa8.42□□□□□ -1.06
VPS28-216ENST00000533806 LINC01620Q4KN68 170 aa8.42□□□□□ -1.06
VPS28-216ENST00000533806 C15orf56Q8N910 161 aa8.42□□□□□ -1.06
VPS28-216ENST00000533806 SLPIP03973 132 aa8.41□□□□□ -1.06
VPS28-216ENST00000533806 RPL39P62891 51 aaKnown RBP8.41□□□□□ -1.06
VPS28-216ENST00000533806 VPS13BQ7Z7G8 4022 aa8.4□□□□□ -1.06
VPS28-216ENST00000533806 S100PP25815 95 aa8.4□□□□□ -1.06
VPS28-216ENST00000533806 CNBPP62633 177 aaKnown RBP8.4□□□□□ -1.06
VPS28-216ENST00000533806 SMAGPQ0VAQ4 97 aa8.4□□□□□ -1.06
VPS28-216ENST00000533806 Q8N8P6 123 aa8.4□□□□□ -1.06
VPS28-216ENST00000533806 C9orf163Q8N9P6 203 aa8.4□□□□□ -1.06
VPS28-216ENST00000533806 TMEM18Q96B42 140 aa8.4□□□□□ -1.06
VPS28-216ENST00000533806 GNB1LQ9BYB4 327 aa8.4□□□□□ -1.06
VPS28-216ENST00000533806 RPS10P5Q9NQ39 176 aa8.4□□□□□ -1.06
VPS28-216ENST00000533806 CCL25O15444 150 aa8.39□□□□□ -1.07
VPS28-216ENST00000533806 Q6ZUT4 128 aa8.39□□□□□ -1.07
VPS28-216ENST00000533806 MAP1LC3AQ9H492 121 aa8.39□□□□□ -1.07
VPS28-216ENST00000533806 SPANXA1Q9NS26 97 aa8.39□□□□□ -1.07
VPS28-216ENST00000533806 SRRM2Q9UQ35 2752 aaKnown RBP8.38□□□□□ -1.07
VPS28-216ENST00000533806 LOC389332A0A1B0GUA5 103 aa8.38□□□□□ -1.07
VPS28-216ENST00000533806 APOC3P02656 99 aa8.38□□□□□ -1.07
VPS28-216ENST00000533806 RAB5AP20339 215 aa8.38□□□□□ -1.07
VPS28-216ENST00000533806 XCL1P47992 114 aa8.38□□□□□ -1.07
VPS28-216ENST00000533806 MRPS36P82909 103 aaKnown RBP8.38□□□□□ -1.07
VPS28-216ENST00000533806 CD164L2Q6UWJ8 174 aa8.38□□□□□ -1.07
VPS28-216ENST00000533806 PYGO1Q9Y3Y4 419 aa8.38□□□□□ -1.07
VPS28-216ENST00000533806 hDV102S1A0JD36 115 aa8.37□□□□□ -1.07
VPS28-216ENST00000533806 C1orf196B1AJZ1 125 aa8.37□□□□□ -1.07
VPS28-216ENST00000533806 K7EMI3 77 aa8.37□□□□□ -1.07
VPS28-216ENST00000533806 HAMPP81172 84 aa8.37□□□□□ -1.07
VPS28-216ENST00000533806 SS18Q15532 418 aa8.37□□□□□ -1.07
VPS28-216ENST00000533806 KIAA1644Q3SXP7 199 aa8.37□□□□□ -1.07
VPS28-216ENST00000533806 RNASE13Q5GAN3 156 aaKnown RBP8.37□□□□□ -1.07
VPS28-216ENST00000533806 SDIM1Q6ZPB5 146 aa8.37□□□□□ -1.07
VPS28-216ENST00000533806 OPRPNQ99935 248 aaPredicted RBP8.37□□□□□ -1.07
VPS28-216ENST00000533806 GVQW2A0A096LPI5 108 aaPredicted RBP8.36□□□□□ -1.07
VPS28-216ENST00000533806 COX19Q49B96 90 aa8.36□□□□□ -1.07
VPS28-216ENST00000533806 CFAP161Q6P656 301 aa8.36□□□□□ -1.07
VPS28-216ENST00000533806 SVBPQ8N300 66 aa8.36□□□□□ -1.07
VPS28-216ENST00000533806 ALKBH7Q9BT30 221 aaPredicted RBP8.36□□□□□ -1.07
VPS28-216ENST00000533806 SNAPINO95295 136 aa8.35□□□□□ -1.07
VPS28-216ENST00000533806 IFI27P40305 119 aaPredicted RBP8.35□□□□□ -1.07
VPS28-216ENST00000533806 YPEL4Q96NS1 127 aa8.35□□□□□ -1.07
VPS28-216ENST00000533806 CHAC1Q9BUX1 264 aa8.35□□□□□ -1.07
VPS28-216ENST00000533806 NXT2Q9NPJ8 142 aaKnown RBP8.35□□□□□ -1.07
VPS28-216ENST00000533806 TRAV13-1A0A0B4J241 112 aa8.34□□□□□ -1.07
VPS28-216ENST00000533806 LINC01546A6NGU7 62 aa8.34□□□□□ -1.07
VPS28-216ENST00000533806 SMR3BP02814 79 aaPredicted RBP8.34□□□□□ -1.07
VPS28-216ENST00000533806 MT-ND6P03923 174 aa8.34□□□□□ -1.07
VPS28-216ENST00000533806 ORMDL2Q53FV1 153 aa8.34□□□□□ -1.07
VPS28-216ENST00000533806 IGLV4-3A0A075B6K6 122 aa8.33□□□□□ -1.08
VPS28-216ENST00000533806 TGIF2-C20orf24A0A0A6YYL0 155 aa8.33□□□□□ -1.08
VPS28-216ENST00000533806 IGHV1-58A0A0C4DH39 117 aa8.33□□□□□ -1.08
VPS28-216ENST00000533806 IGIPA6NJ69 53 aa8.33□□□□□ -1.08
VPS28-216ENST00000533806 NDUFA5Q16718 116 aa8.33□□□□□ -1.08
VPS28-216ENST00000533806 HIGD2BQ4VC39 106 aa8.33□□□□□ -1.08
VPS28-216ENST00000533806 C2orf66Q6UXQ4 117 aa8.33□□□□□ -1.08
VPS28-216ENST00000533806 SCXQ7RTU7 201 aa8.33□□□□□ -1.08
VPS28-216ENST00000533806 MRPL18Q9H0U6 180 aaKnown RBP8.33□□□□□ -1.08
VPS28-216ENST00000533806 CYSLTR1Q9Y271 337 aa8.33□□□□□ -1.08
VPS28-216ENST00000533806 IGHV3OR16-9A0A0B4J2B5 98 aa8.32□□□□□ -1.08
VPS28-216ENST00000533806 PANO1I0J062 215 aa8.32□□□□□ -1.08
VPS28-216ENST00000533806 NPSP0C0P6 89 aa8.32□□□□□ -1.08
VPS28-216ENST00000533806 CIRBPQ14011 172 aaKnown RBP8.32□□□□□ -1.08
VPS28-216ENST00000533806 CIRBP-AS1Q8TBR5 109 aa8.32□□□□□ -1.08
VPS28-216ENST00000533806 AP5S1Q9NUS5 200 aa8.32□□□□□ -1.08
VPS28-216ENST00000533806 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.31□□□□□ -1.08
VPS28-216ENST00000533806 EPM2AB3EWF7 344 aa8.31□□□□□ -1.08
VPS28-216ENST00000533806 COX7A2LO14548 114 aa8.31□□□□□ -1.08
VPS28-216ENST00000533806 LINC00173Q6ZV60 143 aa8.31□□□□□ -1.08
VPS28-216ENST00000533806 SLC7A5P1Q8MH63 180 aa8.31□□□□□ -1.08
VPS28-216ENST00000533806 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.31□□□□□ -1.08
VPS28-216ENST00000533806 IGHV3-64A0A075B6Q5 118 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms