RNA–Protein interactions for RNA: ENST00000529986.5

CTNND1-223, Transcript of catenin delta 1, human

TSL 1 (best) BASIC

Gene CTNND1, Length 5,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-223	ENST00000529986	CRIP2	P52943	208 aa	Predicted RBP	5.7	□□□□□ -1.5
CTNND1-223	ENST00000529986	EIF4EBP1	Q13541	118 aa	Predicted RBP	5.7	□□□□□ -1.5
CTNND1-223	ENST00000529986	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	5.7	□□□□□ -1.5
CTNND1-223	ENST00000529986		A0A1W2PNU3	283 aa	Predicted RBP	5.69	□□□□□ -1.5
CTNND1-223	ENST00000529986	PRO0255	Q9UI72	69 aa		5.69	□□□□□ -1.5
CTNND1-223	ENST00000529986		A0A087WVE0	104 aa		5.69	□□□□□ -1.5
CTNND1-223	ENST00000529986	UFSP1	Q6NVU6	142 aa		5.69	□□□□□ -1.5
CTNND1-223	ENST00000529986	C22orf34	Q6ZV56	151 aa		5.69	□□□□□ -1.5
CTNND1-223	ENST00000529986	NRAC	Q8N912	160 aa		5.69	□□□□□ -1.5
CTNND1-223	ENST00000529986	TRBV6-5	A0A0K0K1A5	114 aa		5.69	□□□□□ -1.5
CTNND1-223	ENST00000529986	C9orf66	Q5T8R8	295 aa		5.69	□□□□□ -1.5
CTNND1-223	ENST00000529986	WFDC13	Q8IUB5	93 aa		5.69	□□□□□ -1.5
CTNND1-223	ENST00000529986	LINC00526	Q96FQ7	95 aa		5.69	□□□□□ -1.5
CTNND1-223	ENST00000529986	KLK5	Q9Y337	293 aa	Predicted RBP	5.69	□□□□□ -1.5
CTNND1-223	ENST00000529986	MYCNOS	P40205	109 aa		5.69	□□□□□ -1.5
CTNND1-223	ENST00000529986	PCDH15	Q96QU1	1955 aa		5.68	□□□□□ -1.5
CTNND1-223	ENST00000529986	SORL1	Q92673	2214 aa		5.68	□□□□□ -1.5
CTNND1-223	ENST00000529986	CASC2	Q6XLA1	102 aa		5.68	□□□□□ -1.5
CTNND1-223	ENST00000529986		Q6ZSV7	163 aa		5.68	□□□□□ -1.5
CTNND1-223	ENST00000529986	FAM19A3	Q7Z5A8	133 aa		5.68	□□□□□ -1.5
CTNND1-223	ENST00000529986	C11orf21	Q9P2W6	132 aa		5.68	□□□□□ -1.5
CTNND1-223	ENST00000529986		Q6ZQY7	126 aa		5.68	□□□□□ -1.5
CTNND1-223	ENST00000529986	URB1-AS1	Q96HZ7	61 aa		5.68	□□□□□ -1.5
CTNND1-223	ENST00000529986	FAM30A	Q9NZY2	134 aa		5.68	□□□□□ -1.5
CTNND1-223	ENST00000529986	IBA57-AS1	B1ANH7	110 aa		5.68	□□□□□ -1.5
CTNND1-223	ENST00000529986	SMIM11B	Q8TCY0	68 aa		5.68	□□□□□ -1.5
CTNND1-223	ENST00000529986	PRM2	P04554	102 aa		5.67	□□□□□ -1.5
CTNND1-223	ENST00000529986	SPG11	Q96JI7	2443 aa		5.67	□□□□□ -1.5
CTNND1-223	ENST00000529986	PTPRS	Q13332	1948 aa		5.67	□□□□□ -1.5
CTNND1-223	ENST00000529986	FAM208B	Q5VWN6	2430 aa		5.67	□□□□□ -1.5
CTNND1-223	ENST00000529986	BDP1	A6H8Y1	2624 aa		5.67	□□□□□ -1.5
CTNND1-223	ENST00000529986	LOC107984640	A0A0U1RRK4	108 aa		5.67	□□□□□ -1.5
CTNND1-223	ENST00000529986	NANOS2	P60321	138 aa	Known RBP	5.67	□□□□□ -1.5
CTNND1-223	ENST00000529986	PRR9	Q5T870	116 aa		5.67	□□□□□ -1.5
CTNND1-223	ENST00000529986	TSHB	P01222	138 aa		5.67	□□□□□ -1.5
CTNND1-223	ENST00000529986	FAM19A1	Q7Z5A9	133 aa		5.67	□□□□□ -1.5
CTNND1-223	ENST00000529986	C2CD3	Q4AC94	2353 aa		5.66	□□□□□ -1.5
CTNND1-223	ENST00000529986	CELA1	Q9UNI1	258 aa		5.66	□□□□□ -1.5
CTNND1-223	ENST00000529986	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	5.66	□□□□□ -1.5
CTNND1-223	ENST00000529986	IGKV2-28	A0A075B6P5	120 aa		5.66	□□□□□ -1.5
CTNND1-223	ENST00000529986	IGKV2D-28	P01615	120 aa		5.66	□□□□□ -1.5
CTNND1-223	ENST00000529986	ADORA2A-AS1	P86434	159 aa		5.66	□□□□□ -1.5
CTNND1-223	ENST00000529986	C4orf3	Q8WVX3	66 aa		5.66	□□□□□ -1.5
CTNND1-223	ENST00000529986	CEP192	Q8TEP8	1941 aa		5.66	□□□□□ -1.5
CTNND1-223	ENST00000529986	SMIM26	A0A096LP01	95 aa		5.66	□□□□□ -1.5
CTNND1-223	ENST00000529986	ARHGAP32	A7KAX9	2087 aa		5.66	□□□□□ -1.5
CTNND1-223	ENST00000529986		A6NDX4	124 aa		5.65	□□□□□ -1.5
CTNND1-223	ENST00000529986	DAZAP2	Q15038	168 aa	Predicted RBP	5.65	□□□□□ -1.5
CTNND1-223	ENST00000529986	B9D2	Q9BPU9	175 aa		5.65	□□□□□ -1.5
CTNND1-223	ENST00000529986	RNASE3	P12724	160 aa	Known RBP	5.65	□□□□□ -1.5
CTNND1-223	ENST00000529986		K7EQG2	157 aa		5.65	□□□□□ -1.51
CTNND1-223	ENST00000529986	IGHV4-30-4	P0DP06	118 aa		5.65	□□□□□ -1.51
CTNND1-223	ENST00000529986	IGHV4-31	P0DP07	118 aa		5.65	□□□□□ -1.51
CTNND1-223	ENST00000529986	C4orf48	Q5BLP8	95 aa		5.65	□□□□□ -1.51
CTNND1-223	ENST00000529986	FAM222A	Q5U5X8	452 aa		5.65	□□□□□ -1.51
CTNND1-223	ENST00000529986	PRO3102	Q9H379	93 aa		5.65	□□□□□ -1.51
CTNND1-223	ENST00000529986	SRCAP	Q6ZRS2	3230 aa		5.65	□□□□□ -1.51
CTNND1-223	ENST00000529986	ODF3B	A8MYP8	253 aa		5.64	□□□□□ -1.51
CTNND1-223	ENST00000529986	MIF	P14174	115 aa		5.64	□□□□□ -1.51
CTNND1-223	ENST00000529986	C10orf99	Q6UWK7	81 aa		5.64	□□□□□ -1.51
CTNND1-223	ENST00000529986	PPDPF	Q9H3Y8	114 aa		5.64	□□□□□ -1.51
CTNND1-223	ENST00000529986	LINC00574	Q9H8X3	128 aa		5.64	□□□□□ -1.51
CTNND1-223	ENST00000529986	PCNX3	Q9H6A9	2034 aa		5.64	□□□□□ -1.51
CTNND1-223	ENST00000529986	PMAIP1	Q13794	54 aa		5.64	□□□□□ -1.51
CTNND1-223	ENST00000529986		Q6JHZ5	121 aa		5.64	□□□□□ -1.51
CTNND1-223	ENST00000529986	TRBV6-8	A0A0A6YYG3	113 aa		5.63	□□□□□ -1.51
CTNND1-223	ENST00000529986	LOC100131303	A0A0U1RQF7	123 aa		5.63	□□□□□ -1.51
CTNND1-223	ENST00000529986	C10orf142	B7Z368	130 aa		5.63	□□□□□ -1.51
CTNND1-223	ENST00000529986	VPREB1	P12018	145 aa		5.63	□□□□□ -1.51
CTNND1-223	ENST00000529986	LRP4	O75096	1905 aa		5.63	□□□□□ -1.51
CTNND1-223	ENST00000529986	C9orf85	Q96MD7	179 aa		5.63	□□□□□ -1.51
CTNND1-223	ENST00000529986	UBE2D4	Q9Y2X8	147 aa		5.63	□□□□□ -1.51
CTNND1-223	ENST00000529986	CSPG4	Q6UVK1	2322 aa		5.63	□□□□□ -1.51
CTNND1-223	ENST00000529986	ODF3	Q96PU9	254 aa		5.63	□□□□□ -1.51
CTNND1-223	ENST00000529986	EBI3	Q14213	229 aa		5.62	□□□□□ -1.51
CTNND1-223	ENST00000529986	PYGO1	Q9Y3Y4	419 aa		5.62	□□□□□ -1.51
CTNND1-223	ENST00000529986		A0A087WZ39	114 aa		5.62	□□□□□ -1.51
CTNND1-223	ENST00000529986	POLR2K	P53803	58 aa	Known RBP	5.62	□□□□□ -1.51
CTNND1-223	ENST00000529986	RETN	Q9HD89	108 aa		5.62	□□□□□ -1.51
CTNND1-223	ENST00000529986	TSPEAR-AS2	P59090	65 aa		5.62	□□□□□ -1.51
CTNND1-223	ENST00000529986	SERP1	Q9Y6X1	66 aa		5.62	□□□□□ -1.51
CTNND1-223	ENST00000529986	PSPHP1	O15172	72 aa		5.61	□□□□□ -1.51
CTNND1-223	ENST00000529986	FBXL19-AS1	Q494R0	122 aa		5.61	□□□□□ -1.51
CTNND1-223	ENST00000529986	SPINK6	Q6UWN8	80 aa		5.61	□□□□□ -1.51
CTNND1-223	ENST00000529986	TMEM89	A2RUT3	159 aa		5.61	□□□□□ -1.51
CTNND1-223	ENST00000529986	PTPN13	Q12923	2485 aa		5.61	□□□□□ -1.51
CTNND1-223	ENST00000529986	UBE2D1	P51668	147 aa		5.61	□□□□□ -1.51
CTNND1-223	ENST00000529986	PRR15L	Q9BU68	103 aa		5.61	□□□□□ -1.51
CTNND1-223	ENST00000529986	PRORY	Q9H606	182 aa		5.61	□□□□□ -1.51
CTNND1-223	ENST00000529986	DEFB114	Q30KQ6	69 aa		5.61	□□□□□ -1.51
CTNND1-223	ENST00000529986	RPL37AP8	A6NKH3	93 aa		5.61	□□□□□ -1.51
CTNND1-223	ENST00000529986	ZNF580	Q9UK33	172 aa		5.61	□□□□□ -1.51
CTNND1-223	ENST00000529986	CSDC2	Q9Y534	153 aa	Known RBP	5.61	□□□□□ -1.51
CTNND1-223	ENST00000529986	HCFC1	P51610	2035 aa		5.6	□□□□□ -1.51
CTNND1-223	ENST00000529986	CRYGD	P07320	174 aa		5.6	□□□□□ -1.51
CTNND1-223	ENST00000529986	LMO4	P61968	165 aa		5.6	□□□□□ -1.51
CTNND1-223	ENST00000529986	BBC3	Q96PG8	261 aa	Predicted RBP	5.6	□□□□□ -1.51
CTNND1-223	ENST00000529986	PRO0628	Q9UI54	55 aa		5.6	□□□□□ -1.51
CTNND1-223	ENST00000529986	TRAV7	A0A075B6U4	112 aa		5.6	□□□□□ -1.51
CTNND1-223	ENST00000529986		A0A087WYN8	130 aa		5.6	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms