RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 NTM-AS1Q6ZSK4 140 aa5.1□□□□□ -1.59
CD44-228ENST00000528455 FA2HQ7L5A8 372 aa5.1□□□□□ -1.59
CD44-228ENST00000528455 APLNQ9ULZ1 77 aa5.1□□□□□ -1.59
CD44-228ENST00000528455 TRBV25-1A0A075B6N4 114 aa5.09□□□□□ -1.59
CD44-228ENST00000528455 IGHV1-24A0A0C4DH33 117 aa5.09□□□□□ -1.59
CD44-228ENST00000528455 TSHBP01222 138 aa5.09□□□□□ -1.59
CD44-228ENST00000528455 S100A6P06703 90 aa5.09□□□□□ -1.59
CD44-228ENST00000528455 FCER1GP30273 86 aa5.09□□□□□ -1.59
CD44-228ENST00000528455 NDUFA6P56556 154 aa5.09□□□□□ -1.59
CD44-228ENST00000528455 IQCJQ1A5X6 159 aa5.09□□□□□ -1.59
CD44-228ENST00000528455 ESRGQ1W209 222 aa5.09□□□□□ -1.59
CD44-228ENST00000528455 LELP1Q5T871 98 aa5.09□□□□□ -1.59
CD44-228ENST00000528455 NTN5Q8WTR8 489 aaPredicted RBP5.09□□□□□ -1.59
CD44-228ENST00000528455 TMEM18Q96B42 140 aa5.09□□□□□ -1.59
CD44-228ENST00000528455 URB1-AS1Q96HZ7 61 aa5.09□□□□□ -1.59
CD44-228ENST00000528455 IGHV3-38A0A0C4DH36 116 aa5.08□□□□□ -1.6
CD44-228ENST00000528455 CCL18P55774 89 aa5.08□□□□□ -1.6
CD44-228ENST00000528455 SMAGPQ0VAQ4 97 aa5.08□□□□□ -1.6
CD44-228ENST00000528455 PACRGQ96M98 296 aaPredicted RBP5.08□□□□□ -1.6
CD44-228ENST00000528455 TRAV8-6A0A0B4J262 113 aa5.07□□□□□ -1.6
CD44-228ENST00000528455 A0A1B0GUV1 79 aa5.07□□□□□ -1.6
CD44-228ENST00000528455 NUPR1O60356 82 aa5.07□□□□□ -1.6
CD44-228ENST00000528455 HSBP1O75506 76 aa5.07□□□□□ -1.6
CD44-228ENST00000528455 SERF1AO75920 110 aa5.07□□□□□ -1.6
CD44-228ENST00000528455 AMTP48728 403 aa5.07□□□□□ -1.6
CD44-228ENST00000528455 PKIAP61925 76 aa5.07□□□□□ -1.6
CD44-228ENST00000528455 C20orf203Q8NBC4 194 aa5.07□□□□□ -1.6
CD44-228ENST00000528455 TMEM243Q9BU79 118 aa5.07□□□□□ -1.6
CD44-228ENST00000528455 CHCHD7Q9BUK0 85 aa5.07□□□□□ -1.6
CD44-228ENST00000528455 TIMM21Q9BVV7 248 aa5.07□□□□□ -1.6
CD44-228ENST00000528455 PYGO1Q9Y3Y4 419 aa5.07□□□□□ -1.6
CD44-228ENST00000528455 CSDC2Q9Y534 153 aaKnown RBP5.07□□□□□ -1.6
CD44-228ENST00000528455 ALMS1Q8TCU4 4167 aa5.07□□□□□ -1.6
CD44-228ENST00000528455 C5orf52A6NGY3 159 aa5.06□□□□□ -1.6
CD44-228ENST00000528455 K7EP13 123 aa5.06□□□□□ -1.6
CD44-228ENST00000528455 LY6G6CO95867 125 aa5.06□□□□□ -1.6
CD44-228ENST00000528455 RNASEKQ6P5S7 137 aaKnown RBP5.06□□□□□ -1.6
CD44-228ENST00000528455 ERASQ7Z444 233 aa5.06□□□□□ -1.6
CD44-228ENST00000528455 MRPL52Q86TS9 123 aaKnown RBP5.06□□□□□ -1.6
CD44-228ENST00000528455 TOMM6Q96B49 74 aa5.06□□□□□ -1.6
CD44-228ENST00000528455 UPK3BQ9BT76 320 aa5.06□□□□□ -1.6
CD44-228ENST00000528455 CYSLTR1Q9Y271 337 aa5.06□□□□□ -1.6
CD44-228ENST00000528455 EPPK1P58107 5090 aaKnown RBP5.06□□□□□ -1.6
CD44-228ENST00000528455 IGIPA6NJ69 53 aa5.05□□□□□ -1.6
CD44-228ENST00000528455 UBE2L6O14933 153 aa5.05□□□□□ -1.6
CD44-228ENST00000528455 HBDP02042 147 aa5.05□□□□□ -1.6
CD44-228ENST00000528455 ZNF25P17030 456 aaPredicted RBP5.05□□□□□ -1.6
CD44-228ENST00000528455 PDZD11Q5EBL8 140 aa5.05□□□□□ -1.6
CD44-228ENST00000528455 C2orf66Q6UXQ4 117 aa5.05□□□□□ -1.6
CD44-228ENST00000528455 DEFB104AQ8WTQ1 72 aa5.05□□□□□ -1.6
CD44-228ENST00000528455 TMEM141Q96I45 108 aa5.05□□□□□ -1.6
CD44-228ENST00000528455 CHCHD5Q9BSY4 110 aa5.05□□□□□ -1.6
CD44-228ENST00000528455 MRPS16Q9Y3D3 137 aaKnown RBP5.05□□□□□ -1.6
CD44-228ENST00000528455 LINC00588Q9Y4M8 146 aa5.05□□□□□ -1.6
CD44-228ENST00000528455 A0A096LNJ9 63 aa5.04□□□□□ -1.6
CD44-228ENST00000528455 TMEM262E9PQX1 116 aa5.04□□□□□ -1.6
CD44-228ENST00000528455 ATP5LO75964 103 aa5.04□□□□□ -1.6
CD44-228ENST00000528455 FGF6P10767 208 aa5.04□□□□□ -1.6
CD44-228ENST00000528455 SNRPEP62304 92 aaKnown RBP5.04□□□□□ -1.6
CD44-228ENST00000528455 MRPS36P82909 103 aaKnown RBP5.04□□□□□ -1.6
CD44-228ENST00000528455 PAPPA-AS1Q5QFB9 102 aa5.04□□□□□ -1.6
CD44-228ENST00000528455 DGAT2L7PQ6IED9 249 aa5.04□□□□□ -1.6
CD44-228ENST00000528455 FAM19A2Q8N3H0 131 aa5.04□□□□□ -1.6
CD44-228ENST00000528455 SCGB3A1Q96QR1 104 aa5.04□□□□□ -1.6
CD44-228ENST00000528455 TIMM17AQ99595 171 aa5.04□□□□□ -1.6
CD44-228ENST00000528455 SPANXA1Q9NS26 97 aa5.04□□□□□ -1.6
CD44-228ENST00000528455 UBE2D4Q9Y2X8 147 aa5.04□□□□□ -1.6
CD44-228ENST00000528455 TRAV9-2A0A087WT02 112 aa5.03□□□□□ -1.6
CD44-228ENST00000528455 A0A087WX48 190 aa5.03□□□□□ -1.6
CD44-228ENST00000528455 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.03□□□□□ -1.6
CD44-228ENST00000528455 SIVA1O15304 175 aa5.03□□□□□ -1.6
CD44-228ENST00000528455 LEPROTL1O95214 131 aa5.03□□□□□ -1.6
CD44-228ENST00000528455 DNAH10OSP0CZ25 163 aa5.03□□□□□ -1.6
CD44-228ENST00000528455 RPL39P62891 51 aaKnown RBP5.03□□□□□ -1.6
CD44-228ENST00000528455 AMMECR1LQ6DCA0 310 aa5.03□□□□□ -1.6
CD44-228ENST00000528455 LGALS9CQ6DKI2 356 aa5.03□□□□□ -1.6
CD44-228ENST00000528455 HIST3H2BBQ8N257 126 aa5.03□□□□□ -1.6
CD44-228ENST00000528455 ZNF664Q8N3J9 261 aa5.03□□□□□ -1.6
CD44-228ENST00000528455 TMEM101Q96IK0 257 aa5.03□□□□□ -1.6
CD44-228ENST00000528455 Q9H8V8 135 aa5.03□□□□□ -1.6
CD44-228ENST00000528455 CDC42SE2Q9NRR3 84 aa5.03□□□□□ -1.6
CD44-228ENST00000528455 HSPB8Q9UJY1 196 aa5.03□□□□□ -1.6
CD44-228ENST00000528455 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.02□□□□□ -1.61
CD44-228ENST00000528455 IGKV2-29A2NJV5 120 aaPredicted RBP5.02□□□□□ -1.61
CD44-228ENST00000528455 CCL25O15444 150 aa5.02□□□□□ -1.61
CD44-228ENST00000528455 S100A2P29034 98 aa5.02□□□□□ -1.61
CD44-228ENST00000528455 RBX1P62877 108 aa5.02□□□□□ -1.61
CD44-228ENST00000528455 GAGE6Q13070 117 aa5.02□□□□□ -1.61
CD44-228ENST00000528455 PMCHL1Q16048 86 aa5.02□□□□□ -1.61
CD44-228ENST00000528455 LINC01556Q5JQF7 62 aa5.02□□□□□ -1.61
CD44-228ENST00000528455 OR5A1Q8NGJ0 315 aa5.02□□□□□ -1.61
CD44-228ENST00000528455 VCX2Q9H322 139 aa5.02□□□□□ -1.61
CD44-228ENST00000528455 KMT2AQ03164 3969 aa5.01□□□□□ -1.61
CD44-228ENST00000528455 FABP4P15090 132 aa5.01□□□□□ -1.61
CD44-228ENST00000528455 SPATA12Q7Z6I5 190 aa5.01□□□□□ -1.61
CD44-228ENST00000528455 WFDC10BQ8IUB3 73 aa5.01□□□□□ -1.61
CD44-228ENST00000528455 UBE2DNLQ8IWF7 75 aa5.01□□□□□ -1.61
CD44-228ENST00000528455 FAM104AQ969W3 186 aa5.01□□□□□ -1.61
CD44-228ENST00000528455 IFI27L1Q96BM0 104 aa5.01□□□□□ -1.61
CD44-228ENST00000528455 AMELXQ99217 191 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms