RNA–Protein interactions for RNA: ENST00000522353.2

PCDHA3-201, Transcript of protocadherin alpha 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA3, Length 5,260 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3-201ENST00000522353 IBA57-AS1B1ANH7 110 aa12.04□□□□□ -0.48
PCDHA3-201ENST00000522353 KRTAP10-9P60411 292 aa12.04□□□□□ -0.48
PCDHA3-201ENST00000522353 FAM236AA0A1B0GUQ0 79 aa12.04□□□□□ -0.48
PCDHA3-201ENST00000522353 FAM236BA0A1B0GV22 79 aa12.04□□□□□ -0.48
PCDHA3-201ENST00000522353 OXLD1Q5BKU9 147 aa12.04□□□□□ -0.48
PCDHA3-201ENST00000522353 ZNF462Q96JM2 2506 aa12.04□□□□□ -0.48
PCDHA3-201ENST00000522353 LRRK2Q5S007 2527 aa12.04□□□□□ -0.48
PCDHA3-201ENST00000522353 KIAA1549LQ6ZVL6 1849 aa12.03□□□□□ -0.48
PCDHA3-201ENST00000522353 IGLV2-18A0A075B6J9 118 aa12.03□□□□□ -0.48
PCDHA3-201ENST00000522353 DSCAML1Q8TD84 2053 aa12.03□□□□□ -0.48
PCDHA3-201ENST00000522353 TLN2Q9Y4G6 2542 aa12.03□□□□□ -0.48
PCDHA3-201ENST00000522353 LELP1Q5T871 98 aa12.03□□□□□ -0.48
PCDHA3-201ENST00000522353 B5MCH6 92 aa12.03□□□□□ -0.48
PCDHA3-201ENST00000522353 RBX1P62877 108 aa12.03□□□□□ -0.48
PCDHA3-201ENST00000522353 Q8N976 141 aa12.03□□□□□ -0.48
PCDHA3-201ENST00000522353 IGLV4-3A0A075B6K6 122 aa12.02□□□□□ -0.48
PCDHA3-201ENST00000522353 AVPP01185 164 aa12.02□□□□□ -0.48
PCDHA3-201ENST00000522353 LY6G6CO95867 125 aa12.02□□□□□ -0.48
PCDHA3-201ENST00000522353 C18orf65Q6ZTR6 163 aa12.02□□□□□ -0.48
PCDHA3-201ENST00000522353 WFDC9Q8NEX5 89 aa12.02□□□□□ -0.48
PCDHA3-201ENST00000522353 CEP192Q8TEP8 1941 aa12.02□□□□□ -0.49
PCDHA3-201ENST00000522353 USP9XQ93008 2570 aaPredicted RBP12.02□□□□□ -0.49
PCDHA3-201ENST00000522353 Q6ZS46 218 aa12.02□□□□□ -0.49
PCDHA3-201ENST00000522353 PCNX3Q9H6A9 2034 aa12.02□□□□□ -0.49
PCDHA3-201ENST00000522353 WFDC10AQ9H1F0 79 aa12.02□□□□□ -0.49
PCDHA3-201ENST00000522353 SMR3AQ99954 134 aa12.01□□□□□ -0.49
PCDHA3-201ENST00000522353 ARHGAP21Q5T5U3 1957 aa12.01□□□□□ -0.49
PCDHA3-201ENST00000522353 IGHV4-30-4P0DP06 118 aa12.01□□□□□ -0.49
PCDHA3-201ENST00000522353 ZNF22P17026 224 aaPredicted RBP12□□□□□ -0.49
PCDHA3-201ENST00000522353 TRBV6-5A0A0K0K1A5 114 aa12□□□□□ -0.49
PCDHA3-201ENST00000522353 FAM19A5Q7Z5A7 132 aaPredicted RBP11.99□□□□□ -0.49
PCDHA3-201ENST00000522353 KLLNB2CW77 178 aa11.99□□□□□ -0.49
PCDHA3-201ENST00000522353 CD164L2Q6UWJ8 174 aa11.99□□□□□ -0.49
PCDHA3-201ENST00000522353 TRBV27A0A0K0K1C4 114 aa11.98□□□□□ -0.49
PCDHA3-201ENST00000522353 M0R2N4 97 aa11.98□□□□□ -0.49
PCDHA3-201ENST00000522353 XAGE1AQ9HD64 81 aa11.98□□□□□ -0.49
PCDHA3-201ENST00000522353 CEP295Q9C0D2 2601 aa11.98□□□□□ -0.49
PCDHA3-201ENST00000522353 A0A096LNI7 61 aa11.98□□□□□ -0.49
PCDHA3-201ENST00000522353 TMEM223A0PJW6 202 aa11.98□□□□□ -0.49
PCDHA3-201ENST00000522353 C5orf47Q569G3 176 aa11.98□□□□□ -0.49
PCDHA3-201ENST00000522353 PYGO1Q9Y3Y4 419 aa11.98□□□□□ -0.49
PCDHA3-201ENST00000522353 LINC00643Q86TS7 51 aa11.98□□□□□ -0.49
PCDHA3-201ENST00000522353 C14orf132Q9NPU4 83 aa11.98□□□□□ -0.49
PCDHA3-201ENST00000522353 IGKV2D-26A0A0A0MRZ7 120 aa11.98□□□□□ -0.49
PCDHA3-201ENST00000522353 CRIP1P50238 77 aa11.97□□□□□ -0.49
PCDHA3-201ENST00000522353 SPANXB1Q9NS25 103 aaPredicted RBP11.97□□□□□ -0.49
PCDHA3-201ENST00000522353 PRB2P02812 416 aaPredicted RBP11.97□□□□□ -0.49
PCDHA3-201ENST00000522353 DCANP1Q8TF63 244 aa11.97□□□□□ -0.49
PCDHA3-201ENST00000522353 MRGPRG-AS1Q2M3A8 158 aa11.97□□□□□ -0.49
PCDHA3-201ENST00000522353 TCL1BO95988 128 aa11.96□□□□□ -0.49
PCDHA3-201ENST00000522353 TNRC6BQ9UPQ9 1833 aaKnown RBP11.96□□□□□ -0.49
PCDHA3-201ENST00000522353 PROK1P58294 105 aa11.96□□□□□ -0.49
PCDHA3-201ENST00000522353 NUPR2A6NF83 97 aa11.96□□□□□ -0.5
PCDHA3-201ENST00000522353 BPY2O14599 106 aa11.96□□□□□ -0.5
PCDHA3-201ENST00000522353 U3KQK5 164 aa11.95□□□□□ -0.5
PCDHA3-201ENST00000522353 FN1P02751 2386 aaKnown RBP11.95□□□□□ -0.5
PCDHA3-201ENST00000522353 A0A0J9YWU9 116 aa11.95□□□□□ -0.5
PCDHA3-201ENST00000522353 IGLV4-69A0A075B6H9 119 aa11.95□□□□□ -0.5
PCDHA3-201ENST00000522353 PIK3CD-AS1Q5SR53 167 aa11.95□□□□□ -0.5
PCDHA3-201ENST00000522353 ANKRD11Q6UB99 2663 aaPredicted RBP11.95□□□□□ -0.5
PCDHA3-201ENST00000522353 RNASE3P12724 160 aaKnown RBP11.94□□□□□ -0.5
PCDHA3-201ENST00000522353 LINC00308Q8TCZ7 52 aa11.94□□□□□ -0.5
PCDHA3-201ENST00000522353 NANOS2P60321 138 aaKnown RBP11.94□□□□□ -0.5
PCDHA3-201ENST00000522353 RNF185Q96GF1 192 aa11.94□□□□□ -0.5
PCDHA3-201ENST00000522353 CLUHP3Q96NS8 147 aa11.94□□□□□ -0.5
PCDHA3-201ENST00000522353 NUP210LQ5VU65 1888 aa11.94□□□□□ -0.5
PCDHA3-201ENST00000522353 PTH2Q96A98 100 aa11.94□□□□□ -0.5
PCDHA3-201ENST00000522353 ZNF706Q9Y5V0 76 aaPredicted RBP11.94□□□□□ -0.5
PCDHA3-201ENST00000522353 MUC22E2RYF6 1773 aaPredicted RBP11.93□□□□□ -0.5
PCDHA3-201ENST00000522353 UBE2D1P51668 147 aa11.93□□□□□ -0.5
PCDHA3-201ENST00000522353 C9orf85Q96MD7 179 aa11.92□□□□□ -0.5
PCDHA3-201ENST00000522353 LINC00474Q9P2X8 69 aa11.92□□□□□ -0.5
PCDHA3-201ENST00000522353 IGLV1-51P01701 117 aa11.92□□□□□ -0.5
PCDHA3-201ENST00000522353 IGLV2-11P01706 119 aa11.92□□□□□ -0.5
PCDHA3-201ENST00000522353 LOC107984640A0A0U1RRK4 108 aa11.91□□□□□ -0.5
PCDHA3-201ENST00000522353 ODF3L2Q3SX64 289 aa11.91□□□□□ -0.5
PCDHA3-201ENST00000522353 C16orf95Q9H693 158 aa11.91□□□□□ -0.5
PCDHA3-201ENST00000522353 G3V4G9 280 aa11.9□□□□□ -0.5
PCDHA3-201ENST00000522353 SS18L2Q9UHA2 77 aa11.9□□□□□ -0.5
PCDHA3-201ENST00000522353 USP9YO00507 2555 aaPredicted RBP11.9□□□□□ -0.5
PCDHA3-201ENST00000522353 IGKV4-1P06312 121 aa11.9□□□□□ -0.5
PCDHA3-201ENST00000522353 CRIP2P52943 208 aaPredicted RBP11.9□□□□□ -0.5
PCDHA3-201ENST00000522353 FASNP49327 2511 aaKnown RBP11.9□□□□□ -0.5
PCDHA3-201ENST00000522353 UPK3BQ9BT76 320 aa11.89□□□□□ -0.51
PCDHA3-201ENST00000522353 KIAA1549Q9HCM3 1950 aa11.89□□□□□ -0.51
PCDHA3-201ENST00000522353 LINC00959A0A1B0GUT2 108 aa11.89□□□□□ -0.51
PCDHA3-201ENST00000522353 ARHGAP32A7KAX9 2087 aa11.89□□□□□ -0.51
PCDHA3-201ENST00000522353 LOC100131303A0A0U1RQF7 123 aa11.88□□□□□ -0.51
PCDHA3-201ENST00000522353 TSHBP01222 138 aa11.88□□□□□ -0.51
PCDHA3-201ENST00000522353 PRR9Q5T870 116 aa11.88□□□□□ -0.51
PCDHA3-201ENST00000522353 ZNF580Q9UK33 172 aa11.88□□□□□ -0.51
PCDHA3-201ENST00000522353 CHCHD7Q9BUK0 85 aa11.88□□□□□ -0.51
PCDHA3-201ENST00000522353 TIMM17BO60830 172 aa11.88□□□□□ -0.51
PCDHA3-201ENST00000522353 MRPS36P82909 103 aaKnown RBP11.88□□□□□ -0.51
PCDHA3-201ENST00000522353 A0A1W2PPR1 153 aa11.88□□□□□ -0.51
PCDHA3-201ENST00000522353 M0R378 163 aa11.88□□□□□ -0.51
PCDHA3-201ENST00000522353 TRAV23DV6A0A075B6W5 121 aa11.87□□□□□ -0.51
PCDHA3-201ENST00000522353 SEC61GP60059 68 aa11.87□□□□□ -0.51
PCDHA3-201ENST00000522353 C6orf99Q4VX62 202 aa11.87□□□□□ -0.51
PCDHA3-201ENST00000522353 ATP5EP2Q5VTU8 51 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms