RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 TRBV6-1A0A0K0K1D8 114 aa6.79□□□□□ -1.32
LIMCH1-221ENST00000515785 H3BS24 57 aa6.79□□□□□ -1.32
LIMCH1-221ENST00000515785 SH2D1AO60880 128 aa6.79□□□□□ -1.32
LIMCH1-221ENST00000515785 PNRC1Q12796 327 aaPredicted RBP6.79□□□□□ -1.32
LIMCH1-221ENST00000515785 TMEM97Q5BJF2 176 aa6.79□□□□□ -1.32
LIMCH1-221ENST00000515785 PRR27Q6MZM9 219 aa6.79□□□□□ -1.32
LIMCH1-221ENST00000515785 CFAP161Q6P656 301 aa6.79□□□□□ -1.32
LIMCH1-221ENST00000515785 ZFP82Q8N141 532 aa6.79□□□□□ -1.32
LIMCH1-221ENST00000515785 HIST1H2BAQ96A08 127 aa6.79□□□□□ -1.32
LIMCH1-221ENST00000515785 IGKV3OR2-268A0A0C4DH90 116 aa6.78□□□□□ -1.32
LIMCH1-221ENST00000515785 GZMBP10144 247 aa6.78□□□□□ -1.32
LIMCH1-221ENST00000515785 GNG4P50150 75 aa6.78□□□□□ -1.32
LIMCH1-221ENST00000515785 SSTP61278 116 aa6.78□□□□□ -1.32
LIMCH1-221ENST00000515785 LCE4AQ5TA78 99 aa6.78□□□□□ -1.32
LIMCH1-221ENST00000515785 Q86TA4 180 aa6.78□□□□□ -1.32
LIMCH1-221ENST00000515785 RNASE7Q9H1E1 156 aaKnown RBP6.78□□□□□ -1.32
LIMCH1-221ENST00000515785 SMCO4Q9NRQ5 59 aa6.78□□□□□ -1.32
LIMCH1-221ENST00000515785 V9GYV3 84 aa6.78□□□□□ -1.32
LIMCH1-221ENST00000515785 IGHV1-24A0A0C4DH33 117 aa6.77□□□□□ -1.33
LIMCH1-221ENST00000515785 MUC21A0A140T8X8 626 aa6.77□□□□□ -1.33
LIMCH1-221ENST00000515785 LTAP01374 205 aa6.77□□□□□ -1.33
LIMCH1-221ENST00000515785 BAGE2Q86Y30 109 aa6.77□□□□□ -1.33
LIMCH1-221ENST00000515785 TCEAL7Q9BRU2 100 aa6.77□□□□□ -1.33
LIMCH1-221ENST00000515785 FSIP2Q5CZC0 6907 aa6.77□□□□□ -1.33
LIMCH1-221ENST00000515785 TGIF2-C20orf24A0A0A6YYL0 155 aa6.76□□□□□ -1.33
LIMCH1-221ENST00000515785 C19orf71A6NCJ1 209 aa6.76□□□□□ -1.33
LIMCH1-221ENST00000515785 IQCJQ1A5X6 159 aa6.76□□□□□ -1.33
LIMCH1-221ENST00000515785 NUDT10Q8NFP7 164 aa6.76□□□□□ -1.33
LIMCH1-221ENST00000515785 LINC00526Q96FQ7 95 aa6.76□□□□□ -1.33
LIMCH1-221ENST00000515785 NUDT11Q96G61 164 aa6.76□□□□□ -1.33
LIMCH1-221ENST00000515785 FMC1Q96HJ9 113 aa6.76□□□□□ -1.33
LIMCH1-221ENST00000515785 LINC00474Q9P2X8 69 aa6.76□□□□□ -1.33
LIMCH1-221ENST00000515785 MT-ND6P03923 174 aa6.75□□□□□ -1.33
LIMCH1-221ENST00000515785 UBE2G1P62253 170 aa6.75□□□□□ -1.33
LIMCH1-221ENST00000515785 FAM162BQ5T6X4 162 aa6.75□□□□□ -1.33
LIMCH1-221ENST00000515785 OR10AG1Q8NH19 301 aa6.75□□□□□ -1.33
LIMCH1-221ENST00000515785 CTDSP1Q9GZU7 261 aa6.75□□□□□ -1.33
LIMCH1-221ENST00000515785 OSTCQ9NRP0 149 aa6.75□□□□□ -1.33
LIMCH1-221ENST00000515785 TMEM242Q9NWH2 141 aa6.75□□□□□ -1.33
LIMCH1-221ENST00000515785 MT-ND4LP03901 98 aa6.74□□□□□ -1.33
LIMCH1-221ENST00000515785 C1orf137Q5JT78 98 aa6.74□□□□□ -1.33
LIMCH1-221ENST00000515785 FAM231DQ6ZW35 169 aa6.74□□□□□ -1.33
LIMCH1-221ENST00000515785 TMEM243Q9BU79 118 aa6.74□□□□□ -1.33
LIMCH1-221ENST00000515785 KRTAP9-8Q9BYQ0 159 aa6.74□□□□□ -1.33
LIMCH1-221ENST00000515785 CRCT1Q9UGL9 99 aa6.74□□□□□ -1.33
LIMCH1-221ENST00000515785 TMA7Q9Y2S6 64 aaKnown RBP6.74□□□□□ -1.33
LIMCH1-221ENST00000515785 A0A1B0GUV1 79 aa6.73□□□□□ -1.33
LIMCH1-221ENST00000515785 S100A9P06702 114 aaKnown RBP6.73□□□□□ -1.33
LIMCH1-221ENST00000515785 COX8CQ7Z4L0 72 aa6.73□□□□□ -1.33
LIMCH1-221ENST00000515785 GVQW2A0A096LPI5 108 aaPredicted RBP6.72□□□□□ -1.33
LIMCH1-221ENST00000515785 A0A1W2PNN7 141 aa6.72□□□□□ -1.33
LIMCH1-221ENST00000515785 GAGE2BQ13066 116 aa6.72□□□□□ -1.33
LIMCH1-221ENST00000515785 TRBV24-1A0A075B6N3 115 aa6.71□□□□□ -1.34
LIMCH1-221ENST00000515785 UBE2L6O14933 153 aa6.71□□□□□ -1.34
LIMCH1-221ENST00000515785 GATCO43716 136 aaKnown RBP6.71□□□□□ -1.34
LIMCH1-221ENST00000515785 RAB5AP20339 215 aa6.71□□□□□ -1.34
LIMCH1-221ENST00000515785 FER1L6-AS1Q8NA97 138 aa6.71□□□□□ -1.34
LIMCH1-221ENST00000515785 CHCHD10Q8WYQ3 142 aaPredicted RBP6.71□□□□□ -1.34
LIMCH1-221ENST00000515785 DIRC1Q969H9 104 aa6.71□□□□□ -1.34
LIMCH1-221ENST00000515785 SMIM12Q96EX1 92 aa6.71□□□□□ -1.34
LIMCH1-221ENST00000515785 ZFP30Q9Y2G7 519 aa6.71□□□□□ -1.34
LIMCH1-221ENST00000515785 SMIM27A0A1W2PRY6 76 aa6.7□□□□□ -1.34
LIMCH1-221ENST00000515785 PPP1R2P9O14990 202 aa6.7□□□□□ -1.34
LIMCH1-221ENST00000515785 TSPAN13O95857 204 aa6.7□□□□□ -1.34
LIMCH1-221ENST00000515785 SMIM17P0DL12 118 aa6.7□□□□□ -1.34
LIMCH1-221ENST00000515785 SPANXN1Q5VSR9 72 aa6.7□□□□□ -1.34
LIMCH1-221ENST00000515785 CARD19Q96LW7 228 aa6.7□□□□□ -1.34
LIMCH1-221ENST00000515785 MGPP08493 103 aa6.69□□□□□ -1.34
LIMCH1-221ENST00000515785 AMTP48728 403 aa6.69□□□□□ -1.34
LIMCH1-221ENST00000515785 PHF5AQ7RTV0 110 aaKnown RBP6.69□□□□□ -1.34
LIMCH1-221ENST00000515785 IMMP2LQ96T52 175 aa6.69□□□□□ -1.34
LIMCH1-221ENST00000515785 M0QY20 66 aa6.68□□□□□ -1.34
LIMCH1-221ENST00000515785 IGLV7-43P04211 117 aa6.68□□□□□ -1.34
LIMCH1-221ENST00000515785 PTTG1IPP53801 180 aa6.68□□□□□ -1.34
LIMCH1-221ENST00000515785 LCE5AQ5TCM9 118 aa6.68□□□□□ -1.34
LIMCH1-221ENST00000515785 NUP35Q8NFH5 326 aa6.68□□□□□ -1.34
LIMCH1-221ENST00000515785 RPP21Q9H633 154 aaKnown RBP6.68□□□□□ -1.34
LIMCH1-221ENST00000515785 PKIGQ9Y2B9 76 aa6.68□□□□□ -1.34
LIMCH1-221ENST00000515785 IGLV1-50A0A075B6I6 118 aa6.67□□□□□ -1.34
LIMCH1-221ENST00000515785 H0Y9J4 135 aa6.67□□□□□ -1.34
LIMCH1-221ENST00000515785 TRGC2P03986 189 aa6.67□□□□□ -1.34
LIMCH1-221ENST00000515785 UBE2D1P51668 147 aa6.67□□□□□ -1.34
LIMCH1-221ENST00000515785 SYCNQ0VAF6 134 aa6.67□□□□□ -1.34
LIMCH1-221ENST00000515785 FOXI1Q12951 378 aa6.67□□□□□ -1.34
LIMCH1-221ENST00000515785 C9orf116Q5BN46 136 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-221ENST00000515785 SUMO4Q6EEV6 95 aa6.67□□□□□ -1.34
LIMCH1-221ENST00000515785 OR2D3Q8NGH3 330 aa6.67□□□□□ -1.34
LIMCH1-221ENST00000515785 TSKUQ8WUA8 353 aa6.67□□□□□ -1.34
LIMCH1-221ENST00000515785 LOC107984640A0A0U1RRK4 108 aa6.66□□□□□ -1.34
LIMCH1-221ENST00000515785 LOC105371267A0A1B0GV96 52 aa6.66□□□□□ -1.34
LIMCH1-221ENST00000515785 A0A1B0GXF2 115 aa6.66□□□□□ -1.34
LIMCH1-221ENST00000515785 XCL1P47992 114 aa6.66□□□□□ -1.34
LIMCH1-221ENST00000515785 ANKRD39Q53RE8 183 aa6.66□□□□□ -1.34
LIMCH1-221ENST00000515785 CT83Q5H943 113 aa6.66□□□□□ -1.34
LIMCH1-221ENST00000515785 MRPL54Q6P161 138 aaKnown RBP6.66□□□□□ -1.34
LIMCH1-221ENST00000515785 HIGD1CA8MV81 97 aa6.65□□□□□ -1.34
LIMCH1-221ENST00000515785 SNAI2O43623 268 aa6.65□□□□□ -1.34
LIMCH1-221ENST00000515785 IGLC6P0CF74 106 aa6.65□□□□□ -1.34
LIMCH1-221ENST00000515785 S100PP25815 95 aa6.65□□□□□ -1.34
LIMCH1-221ENST00000515785 FOXA3P55318 350 aaPredicted RBP6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms