RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	6.2	□□□□□ -1.42
CLDND1-231	ENST00000515620	GATD1	Q8NB37	220 aa		6.2	□□□□□ -1.42
CLDND1-231	ENST00000515620	RPL39L	Q96EH5	51 aa	Known RBP	6.2	□□□□□ -1.42
CLDND1-231	ENST00000515620	CDIP1	Q9H305	208 aa		6.2	□□□□□ -1.42
CLDND1-231	ENST00000515620	BORCS7-ASMT	A0A0B4J1R7	106 aa		6.19	□□□□□ -1.42
CLDND1-231	ENST00000515620	COX7A2L	O14548	114 aa		6.19	□□□□□ -1.42
CLDND1-231	ENST00000515620	RETNLB	Q9BQ08	111 aa		6.19	□□□□□ -1.42
CLDND1-231	ENST00000515620	MARVELD1	Q9BSK0	173 aa		6.19	□□□□□ -1.42
CLDND1-231	ENST00000515620		F2Z2F3	143 aa		6.18	□□□□□ -1.42
CLDND1-231	ENST00000515620	RPS20	P60866	119 aa	Known RBP	6.18	□□□□□ -1.42
CLDND1-231	ENST00000515620	UBE2B	P63146	152 aa		6.18	□□□□□ -1.42
CLDND1-231	ENST00000515620	LYZL1	Q6UWQ5	148 aa		6.18	□□□□□ -1.42
CLDND1-231	ENST00000515620	C2orf48	Q96LS8	159 aa		6.18	□□□□□ -1.42
CLDND1-231	ENST00000515620	C19orf71	A6NCJ1	209 aa		6.17	□□□□□ -1.42
CLDND1-231	ENST00000515620	SDHAF1	A6NFY7	115 aa		6.17	□□□□□ -1.42
CLDND1-231	ENST00000515620	PFDN1	O60925	122 aa		6.17	□□□□□ -1.42
CLDND1-231	ENST00000515620	UPK1B	O75841	260 aa		6.17	□□□□□ -1.42
CLDND1-231	ENST00000515620	SPAG11B	Q08648	103 aa		6.17	□□□□□ -1.42
CLDND1-231	ENST00000515620	RPP21	Q9H633	154 aa	Known RBP	6.17	□□□□□ -1.42
CLDND1-231	ENST00000515620		A0A1B0GV50	99 aa		6.16	□□□□□ -1.42
CLDND1-231	ENST00000515620		M0QXV9	152 aa		6.16	□□□□□ -1.42
CLDND1-231	ENST00000515620	ESD	P10768	282 aa		6.16	□□□□□ -1.42
CLDND1-231	ENST00000515620	RPL35	P42766	123 aa	Known RBP	6.16	□□□□□ -1.42
CLDND1-231	ENST00000515620	LINC01547	P58512	204 aa	Predicted RBP	6.16	□□□□□ -1.42
CLDND1-231	ENST00000515620	TPRXL	Q17RH7	258 aa		6.16	□□□□□ -1.42
CLDND1-231	ENST00000515620	TMUB2	Q71RG4	321 aa		6.16	□□□□□ -1.42
CLDND1-231	ENST00000515620	MRAP2	Q96G30	205 aa		6.16	□□□□□ -1.42
CLDND1-231	ENST00000515620	CDC42SE2	Q9NRR3	84 aa		6.16	□□□□□ -1.42
CLDND1-231	ENST00000515620		A0A087X002	238 aa		6.15	□□□□□ -1.42
CLDND1-231	ENST00000515620	XKRY2	A2RUG3	117 aa		6.15	□□□□□ -1.42
CLDND1-231	ENST00000515620	IFNA1	P01562	189 aa		6.15	□□□□□ -1.42
CLDND1-231	ENST00000515620	PMCH	P20382	165 aa		6.15	□□□□□ -1.42
CLDND1-231	ENST00000515620	IFITM3	Q01628	133 aa		6.15	□□□□□ -1.42
CLDND1-231	ENST00000515620	TWIST1	Q15672	202 aa		6.15	□□□□□ -1.42
CLDND1-231	ENST00000515620	RNF151	Q2KHN1	245 aa		6.15	□□□□□ -1.42
CLDND1-231	ENST00000515620	CENPW	Q5EE01	88 aa		6.15	□□□□□ -1.42
CLDND1-231	ENST00000515620	C5orf38	Q86SI9	138 aa		6.15	□□□□□ -1.42
CLDND1-231	ENST00000515620	C1orf196	B1AJZ1	125 aa		6.14	□□□□□ -1.43
CLDND1-231	ENST00000515620		I3L3M4	83 aa		6.14	□□□□□ -1.43
CLDND1-231	ENST00000515620	TSHB	P01222	138 aa		6.14	□□□□□ -1.43
CLDND1-231	ENST00000515620	CTRL	P40313	264 aa		6.14	□□□□□ -1.43
CLDND1-231	ENST00000515620	SRSF3	P84103	164 aa	Known RBP	6.14	□□□□□ -1.43
CLDND1-231	ENST00000515620	GAGE2E	Q4V326	116 aa		6.14	□□□□□ -1.43
CLDND1-231	ENST00000515620		Q5BKY6	102 aa		6.14	□□□□□ -1.43
CLDND1-231	ENST00000515620	KRTAP7-1	Q8IUC3	87 aa		6.14	□□□□□ -1.43
CLDND1-231	ENST00000515620	TYMSOS	Q8TAI1	123 aa		6.14	□□□□□ -1.43
CLDND1-231	ENST00000515620	S100Z	Q8WXG8	99 aa		6.14	□□□□□ -1.43
CLDND1-231	ENST00000515620	IMMP2L	Q96T52	175 aa		6.14	□□□□□ -1.43
CLDND1-231	ENST00000515620	TMEM242	Q9NWH2	141 aa		6.14	□□□□□ -1.43
CLDND1-231	ENST00000515620	GAGE2D	Q9UEU5	116 aa		6.14	□□□□□ -1.43
CLDND1-231	ENST00000515620	FXYD6-FXYD2	A0A087WZ82	144 aa		6.13	□□□□□ -1.43
CLDND1-231	ENST00000515620		G3V3Q6	166 aa		6.13	□□□□□ -1.43
CLDND1-231	ENST00000515620	RNASE13	Q5GAN3	156 aa	Known RBP	6.13	□□□□□ -1.43
CLDND1-231	ENST00000515620	MRPL52	Q86TS9	123 aa	Known RBP	6.13	□□□□□ -1.43
CLDND1-231	ENST00000515620	SFT2D1	Q8WV19	159 aa		6.13	□□□□□ -1.43
CLDND1-231	ENST00000515620	MRPL35	Q9NZE8	188 aa	Known RBP	6.13	□□□□□ -1.43
CLDND1-231	ENST00000515620	MUC17	Q685J3	4493 aa		6.12	□□□□□ -1.43
CLDND1-231	ENST00000515620	IGLV7-46	A0A075B6I9	117 aa		6.12	□□□□□ -1.43
CLDND1-231	ENST00000515620	TRAV13-1	A0A0B4J241	112 aa		6.12	□□□□□ -1.43
CLDND1-231	ENST00000515620	ZNF861P	O60384	105 aa		6.12	□□□□□ -1.43
CLDND1-231	ENST00000515620	C10orf25	Q5T742	122 aa		6.12	□□□□□ -1.43
CLDND1-231	ENST00000515620	C9orf62	Q8N4C0	152 aa		6.12	□□□□□ -1.43
CLDND1-231	ENST00000515620	KCNRG	Q8N5I3	272 aa		6.12	□□□□□ -1.43
CLDND1-231	ENST00000515620	ALG5	Q9Y673	324 aa		6.12	□□□□□ -1.43
CLDND1-231	ENST00000515620	CRYGA	P11844	174 aa		6.11	□□□□□ -1.43
CLDND1-231	ENST00000515620	FOXA3	P55318	350 aa	Predicted RBP	6.11	□□□□□ -1.43
CLDND1-231	ENST00000515620	OR10D4P	Q8NGN7	298 aa		6.11	□□□□□ -1.43
CLDND1-231	ENST00000515620	FAM213B	Q8TBF2	198 aa		6.11	□□□□□ -1.43
CLDND1-231	ENST00000515620	ORAOV1	Q8WV07	137 aa		6.11	□□□□□ -1.43
CLDND1-231	ENST00000515620	CNFN	Q9BYD5	112 aa		6.11	□□□□□ -1.43
CLDND1-231	ENST00000515620	RNASE7	Q9H1E1	156 aa	Known RBP	6.11	□□□□□ -1.43
CLDND1-231	ENST00000515620	SMDT1	Q9H4I9	107 aa		6.11	□□□□□ -1.43
CLDND1-231	ENST00000515620	C7orf77	A4D0Y5	90 aa		6.1	□□□□□ -1.43
CLDND1-231	ENST00000515620	NDUFA1	O15239	70 aa		6.1	□□□□□ -1.43
CLDND1-231	ENST00000515620	TLX1NB	P0CAT3	122 aa		6.1	□□□□□ -1.43
CLDND1-231	ENST00000515620	TEX261	Q6UWH6	196 aa		6.1	□□□□□ -1.43
CLDND1-231	ENST00000515620	SMIM15	Q7Z3B0	74 aa		6.1	□□□□□ -1.43
CLDND1-231	ENST00000515620	C11orf52	Q96A22	123 aa		6.1	□□□□□ -1.43
CLDND1-231	ENST00000515620	C6orf48	Q9UBA6	75 aa		6.1	□□□□□ -1.43
CLDND1-231	ENST00000515620	TRBV6-5	A0A0K0K1A5	114 aa		6.09	□□□□□ -1.43
CLDND1-231	ENST00000515620	RAB19	A4D1S5	217 aa		6.09	□□□□□ -1.43
CLDND1-231	ENST00000515620	GNG4	P50150	75 aa		6.09	□□□□□ -1.43
CLDND1-231	ENST00000515620	UNQ6190/PRO20217	Q6UXQ8	127 aa		6.09	□□□□□ -1.43
CLDND1-231	ENST00000515620	LINC00299	Q6ZSB3	139 aa		6.09	□□□□□ -1.43
CLDND1-231	ENST00000515620	LINC00173	Q6ZV60	143 aa		6.09	□□□□□ -1.43
CLDND1-231	ENST00000515620	MBD3L1	Q8WWY6	194 aa		6.09	□□□□□ -1.43
CLDND1-231	ENST00000515620	ST20	Q9HBF5	79 aa		6.09	□□□□□ -1.43
CLDND1-231	ENST00000515620		F8WDY8	70 aa		6.08	□□□□□ -1.44
CLDND1-231	ENST00000515620		H3BS24	57 aa		6.08	□□□□□ -1.44
CLDND1-231	ENST00000515620		Q6ZUT4	128 aa		6.08	□□□□□ -1.44
CLDND1-231	ENST00000515620	SMIM12	Q96EX1	92 aa		6.08	□□□□□ -1.44
CLDND1-231	ENST00000515620	KRTAP4-8	Q9BYQ9	185 aa		6.08	□□□□□ -1.44
CLDND1-231	ENST00000515620	CYTL1	Q9NRR1	136 aa		6.08	□□□□□ -1.44
CLDND1-231	ENST00000515620	GIP	P09681	153 aa	Predicted RBP	6.07	□□□□□ -1.44
CLDND1-231	ENST00000515620	LINC00304	Q8N9R0	145 aa		6.07	□□□□□ -1.44
CLDND1-231	ENST00000515620	CTDSP1	Q9GZU7	261 aa		6.07	□□□□□ -1.44
CLDND1-231	ENST00000515620	ANAPC11	Q9NYG5	84 aa		6.07	□□□□□ -1.44
CLDND1-231	ENST00000515620	UBE2D4	Q9Y2X8	147 aa		6.07	□□□□□ -1.44
CLDND1-231	ENST00000515620	TRBV20OR9-2	A0A075B6H5	130 aa		6.06	□□□□□ -1.44
CLDND1-231	ENST00000515620	NUPR1	O60356	82 aa		6.06	□□□□□ -1.44

Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms