RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 SNCGO76070 127 aa6.69□□□□□ -1.34
LIMCH1-215ENST00000512632 GAGE2BQ13066 116 aa6.69□□□□□ -1.34
LIMCH1-215ENST00000512632 GAGE2EQ4V326 116 aa6.69□□□□□ -1.34
LIMCH1-215ENST00000512632 Q6YL49 198 aa6.69□□□□□ -1.34
LIMCH1-215ENST00000512632 GAGE2DQ9UEU5 116 aa6.69□□□□□ -1.34
LIMCH1-215ENST00000512632 H7C423 109 aa6.69□□□□□ -1.34
LIMCH1-215ENST00000512632 TMEM101Q96IK0 257 aa6.69□□□□□ -1.34
LIMCH1-215ENST00000512632 NF1P21359 2839 aa6.68□□□□□ -1.34
LIMCH1-215ENST00000512632 TRAV8-4A0A0B4J246 113 aa6.68□□□□□ -1.34
LIMCH1-215ENST00000512632 DSCR9P59020 149 aa6.68□□□□□ -1.34
LIMCH1-215ENST00000512632 C11orf72Q8NBR9 251 aa6.68□□□□□ -1.34
LIMCH1-215ENST00000512632 UBE2WQ96B02 151 aa6.68□□□□□ -1.34
LIMCH1-215ENST00000512632 SPANXDQ9BXN6 97 aa6.68□□□□□ -1.34
LIMCH1-215ENST00000512632 SPANXCQ9NY87 97 aa6.68□□□□□ -1.34
LIMCH1-215ENST00000512632 RNF152Q8N8N0 203 aa6.68□□□□□ -1.34
LIMCH1-215ENST00000512632 Q9H8V8 135 aa6.68□□□□□ -1.34
LIMCH1-215ENST00000512632 TRGV1A0A0A0MS02 117 aa6.68□□□□□ -1.34
LIMCH1-215ENST00000512632 LINC00694P0DN24 101 aa6.68□□□□□ -1.34
LIMCH1-215ENST00000512632 C15orf53Q8NAA6 179 aa6.67□□□□□ -1.34
LIMCH1-215ENST00000512632 EDA2RQ9HAV5 297 aa6.67□□□□□ -1.34
LIMCH1-215ENST00000512632 A0A096LNT2 108 aa6.67□□□□□ -1.34
LIMCH1-215ENST00000512632 A0A1W2PRX2 142 aa6.67□□□□□ -1.34
LIMCH1-215ENST00000512632 FN1P02751 2386 aaKnown RBP6.67□□□□□ -1.34
LIMCH1-215ENST00000512632 INSP01308 110 aa6.66□□□□□ -1.34
LIMCH1-215ENST00000512632 CITED1Q99966 193 aa6.66□□□□□ -1.34
LIMCH1-215ENST00000512632 PEMTQ9UBM1 199 aa6.66□□□□□ -1.34
LIMCH1-215ENST00000512632 PRB1P04280 392 aa6.66□□□□□ -1.34
LIMCH1-215ENST00000512632 DEFB114Q30KQ6 69 aa6.66□□□□□ -1.34
LIMCH1-215ENST00000512632 MTORP42345 2549 aa6.66□□□□□ -1.34
LIMCH1-215ENST00000512632 J3QLI3 93 aa6.66□□□□□ -1.34
LIMCH1-215ENST00000512632 KRTAP10-9P60411 292 aa6.66□□□□□ -1.34
LIMCH1-215ENST00000512632 TTC32Q5I0X7 151 aa6.66□□□□□ -1.34
LIMCH1-215ENST00000512632 YAE1D1Q9NRH1 226 aa6.66□□□□□ -1.34
LIMCH1-215ENST00000512632 CIRBPQ14011 172 aaKnown RBP6.66□□□□□ -1.34
LIMCH1-215ENST00000512632 LINC00242Q5T6M2 205 aa6.66□□□□□ -1.34
LIMCH1-215ENST00000512632 M0QXV9 152 aa6.65□□□□□ -1.34
LIMCH1-215ENST00000512632 IGHV4-31P0DP07 118 aa6.65□□□□□ -1.34
LIMCH1-215ENST00000512632 MEIG1Q5JSS6 88 aa6.65□□□□□ -1.34
LIMCH1-215ENST00000512632 CITED2Q99967 270 aaPredicted RBP6.65□□□□□ -1.34
LIMCH1-215ENST00000512632 ACANP16112 2415 aa6.65□□□□□ -1.35
LIMCH1-215ENST00000512632 GAGE12JA6NER3 117 aa6.65□□□□□ -1.35
LIMCH1-215ENST00000512632 A8MTW9 85 aa6.65□□□□□ -1.35
LIMCH1-215ENST00000512632 LST1O00453 97 aa6.65□□□□□ -1.35
LIMCH1-215ENST00000512632 RS1O15537 224 aa6.65□□□□□ -1.35
LIMCH1-215ENST00000512632 GAGE4Q13068 117 aa6.65□□□□□ -1.35
LIMCH1-215ENST00000512632 GAGE5Q13069 117 aa6.65□□□□□ -1.35
LIMCH1-215ENST00000512632 NIPBLQ6KC79 2804 aaeCLIP6.65□□□□□ -1.35
LIMCH1-215ENST00000512632 B5MCH6 92 aa6.65□□□□□ -1.35
LIMCH1-215ENST00000512632 Q6ZTI0 123 aa6.65□□□□□ -1.35
LIMCH1-215ENST00000512632 LINC00308Q8TCZ7 52 aa6.65□□□□□ -1.35
LIMCH1-215ENST00000512632 NHLRC4P0CG21 123 aaPredicted RBP6.64□□□□□ -1.35
LIMCH1-215ENST00000512632 BEAN1Q3B7T3 259 aa6.64□□□□□ -1.35
LIMCH1-215ENST00000512632 ODF3L2Q3SX64 289 aa6.64□□□□□ -1.35
LIMCH1-215ENST00000512632 PRIMA1Q86XR5 153 aa6.64□□□□□ -1.35
LIMCH1-215ENST00000512632 C1orf158Q8N1D5 194 aa6.64□□□□□ -1.35
LIMCH1-215ENST00000512632 DNAJC30Q96LL9 226 aa6.64□□□□□ -1.35
LIMCH1-215ENST00000512632 IGKV3OR2-268A0A0C4DH90 116 aa6.64□□□□□ -1.35
LIMCH1-215ENST00000512632 NDUFA1O15239 70 aa6.64□□□□□ -1.35
LIMCH1-215ENST00000512632 TIRAPP58753 221 aa6.64□□□□□ -1.35
LIMCH1-215ENST00000512632 STHQ8IWL8 128 aa6.64□□□□□ -1.35
LIMCH1-215ENST00000512632 IFITM1P13164 125 aa6.64□□□□□ -1.35
LIMCH1-215ENST00000512632 SOSTDC1Q6X4U4 206 aa6.64□□□□□ -1.35
LIMCH1-215ENST00000512632 Q8N2B8 174 aa6.64□□□□□ -1.35
LIMCH1-215ENST00000512632 NTM-AS1Q6ZSK4 140 aa6.64□□□□□ -1.35
LIMCH1-215ENST00000512632 H3BT86 120 aa6.63□□□□□ -1.35
LIMCH1-215ENST00000512632 SS18L2Q9UHA2 77 aa6.63□□□□□ -1.35
LIMCH1-215ENST00000512632 NDUFV3P56181 108 aaKnown RBP6.63□□□□□ -1.35
LIMCH1-215ENST00000512632 RPL36AP83881 106 aaKnown RBP6.63□□□□□ -1.35
LIMCH1-215ENST00000512632 RPL36ALQ969Q0 106 aaKnown RBP6.63□□□□□ -1.35
LIMCH1-215ENST00000512632 FSHBP01225 129 aa6.62□□□□□ -1.35
LIMCH1-215ENST00000512632 HERVK_113P63121 156 aa6.62□□□□□ -1.35
LIMCH1-215ENST00000512632 PIK3CD-AS1Q5SR53 167 aa6.62□□□□□ -1.35
LIMCH1-215ENST00000512632 SMIM1B2RUZ4 78 aa6.62□□□□□ -1.35
LIMCH1-215ENST00000512632 TIMM17BO60830 172 aa6.62□□□□□ -1.35
LIMCH1-215ENST00000512632 IGLV5-45A0A087WSX0 123 aa6.62□□□□□ -1.35
LIMCH1-215ENST00000512632 C4orf3Q8WVX3 66 aa6.62□□□□□ -1.35
LIMCH1-215ENST00000512632 NOP10Q9NPE3 64 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-215ENST00000512632 GAGE6Q13070 117 aa6.61□□□□□ -1.35
LIMCH1-215ENST00000512632 TOMM7Q9P0U1 55 aa6.61□□□□□ -1.35
LIMCH1-215ENST00000512632 IGLV5-39A0A0G2JS06 123 aa6.61□□□□□ -1.35
LIMCH1-215ENST00000512632 PLA2G2AP14555 144 aa6.61□□□□□ -1.35
LIMCH1-215ENST00000512632 CCDC179H3BU77 68 aa6.61□□□□□ -1.35
LIMCH1-215ENST00000512632 LOC100131303A0A0U1RQF7 123 aa6.6□□□□□ -1.35
LIMCH1-215ENST00000512632 Q96MF0 132 aa6.6□□□□□ -1.35
LIMCH1-215ENST00000512632 WFDC10AQ9H1F0 79 aa6.6□□□□□ -1.35
LIMCH1-215ENST00000512632 LINC01600Q96MT4 127 aa6.6□□□□□ -1.35
LIMCH1-215ENST00000512632 K7EQD1 137 aa6.6□□□□□ -1.35
LIMCH1-215ENST00000512632 GAGE7O76087 117 aa6.6□□□□□ -1.35
LIMCH1-215ENST00000512632 GAGE12FP0CL80 117 aa6.6□□□□□ -1.35
LIMCH1-215ENST00000512632 GAGE12GP0CL81 117 aa6.6□□□□□ -1.35
LIMCH1-215ENST00000512632 GAGE12IP0CL82 117 aa6.6□□□□□ -1.35
LIMCH1-215ENST00000512632 CDC42SE2Q9NRR3 84 aa6.6□□□□□ -1.35
LIMCH1-215ENST00000512632 TRGV2A0A075B6R0 118 aa6.59□□□□□ -1.35
LIMCH1-215ENST00000512632 COX7A2LO14548 114 aa6.59□□□□□ -1.35
LIMCH1-215ENST00000512632 RPL35AP18077 110 aaKnown RBP6.59□□□□□ -1.35
LIMCH1-215ENST00000512632 UBE2L6O14933 153 aa6.58□□□□□ -1.36
LIMCH1-215ENST00000512632 ITPR3Q14573 2671 aa6.58□□□□□ -1.36
LIMCH1-215ENST00000512632 CCL24O00175 119 aa6.58□□□□□ -1.36
LIMCH1-215ENST00000512632 SETXQ7Z333 2677 aaKnown RBP6.58□□□□□ -1.36
LIMCH1-215ENST00000512632 FLNAP21333 2647 aaKnown RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 105.9 ms