RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CRPP02741 224 aa8.74□□□□□ -1.01
LIMCH1-213ENST00000511496 MIR7-3HGQ8N6C7 128 aa8.74□□□□□ -1.01
LIMCH1-213ENST00000511496 NPBQ8NG41 125 aa8.74□□□□□ -1.01
LIMCH1-213ENST00000511496 RNASE1P07998 156 aaKnown RBP8.74□□□□□ -1.01
LIMCH1-213ENST00000511496 G3V318 75 aa8.73□□□□□ -1.01
LIMCH1-213ENST00000511496 PMAIP1Q13794 54 aa8.73□□□□□ -1.01
LIMCH1-213ENST00000511496 CCDC140Q96MF4 163 aa8.73□□□□□ -1.01
LIMCH1-213ENST00000511496 C2CD3Q4AC94 2353 aa8.73□□□□□ -1.01
LIMCH1-213ENST00000511496 PRB1P04280 392 aa8.73□□□□□ -1.01
LIMCH1-213ENST00000511496 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.73□□□□□ -1.01
LIMCH1-213ENST00000511496 LAMA5O15230 3695 aa8.73□□□□□ -1.01
LIMCH1-213ENST00000511496 SNRPD3P62318 126 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-213ENST00000511496 RPL36AP83881 106 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-213ENST00000511496 SEM1Q6ZVN7 128 aa8.73□□□□□ -1.01
LIMCH1-213ENST00000511496 COPS9Q8WXC6 57 aa8.73□□□□□ -1.01
LIMCH1-213ENST00000511496 RPL36ALQ969Q0 106 aaKnown RBP8.73□□□□□ -1.01
LIMCH1-213ENST00000511496 HTN1P15515 57 aa8.72□□□□□ -1.01
LIMCH1-213ENST00000511496 PROK1P58294 105 aa8.72□□□□□ -1.01
LIMCH1-213ENST00000511496 IGHV7-81A0A0B4J1V7 117 aa8.72□□□□□ -1.01
LIMCH1-213ENST00000511496 DGAT2L7PQ6IED9 249 aa8.72□□□□□ -1.01
LIMCH1-213ENST00000511496 TRAV7A0A075B6U4 112 aa8.71□□□□□ -1.01
LIMCH1-213ENST00000511496 COX6A2Q02221 97 aa8.71□□□□□ -1.01
LIMCH1-213ENST00000511496 IGHV3-38A0A0C4DH36 116 aa8.71□□□□□ -1.01
LIMCH1-213ENST00000511496 SMIM11BQ8TCY0 68 aa8.71□□□□□ -1.01
LIMCH1-213ENST00000511496 KAAG1Q9UBP8 84 aa8.71□□□□□ -1.01
LIMCH1-213ENST00000511496 COL27A1Q8IZC6 1860 aaPredicted RBP8.71□□□□□ -1.02
LIMCH1-213ENST00000511496 FAM229BQ4G0N7 80 aa8.7□□□□□ -1.02
LIMCH1-213ENST00000511496 LINC00337Q8N6G1 96 aa8.7□□□□□ -1.02
LIMCH1-213ENST00000511496 FAM110DQ8TAY7 271 aaPredicted RBP8.7□□□□□ -1.02
LIMCH1-213ENST00000511496 Q9UF83 564 aa8.7□□□□□ -1.02
LIMCH1-213ENST00000511496 MOB4Q9Y3A3 225 aa8.7□□□□□ -1.02
LIMCH1-213ENST00000511496 ZDBF2Q9HCK1 2354 aa8.7□□□□□ -1.02
LIMCH1-213ENST00000511496 TRAV10A0A0B4J240 114 aa8.7□□□□□ -1.02
LIMCH1-213ENST00000511496 TRAV13-2A0A0B4J235 113 aa8.7□□□□□ -1.02
LIMCH1-213ENST00000511496 GPR179Q6PRD1 2367 aa8.7□□□□□ -1.02
LIMCH1-213ENST00000511496 BLCAPP62952 87 aa8.69□□□□□ -1.02
LIMCH1-213ENST00000511496 UNQ9165/PRO28630Q6UXU0 137 aa8.69□□□□□ -1.02
LIMCH1-213ENST00000511496 UBL5Q9BZL1 73 aa8.69□□□□□ -1.02
LIMCH1-213ENST00000511496 NCOR1O75376 2440 aa8.69□□□□□ -1.02
LIMCH1-213ENST00000511496 CREBBPQ92793 2442 aa8.69□□□□□ -1.02
LIMCH1-213ENST00000511496 ATP6V0E1O15342 81 aa8.68□□□□□ -1.02
LIMCH1-213ENST00000511496 BSPH1Q075Z2 132 aa8.68□□□□□ -1.02
LIMCH1-213ENST00000511496 IGHV1OR15-1A0A075B7D0 117 aa8.68□□□□□ -1.02
LIMCH1-213ENST00000511496 HAMPP81172 84 aa8.68□□□□□ -1.02
LIMCH1-213ENST00000511496 KLKP1Q107X0 134 aa8.68□□□□□ -1.02
LIMCH1-213ENST00000511496 OVOL2Q9BRP0 275 aa8.68□□□□□ -1.02
LIMCH1-213ENST00000511496 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.68□□□□□ -1.02
LIMCH1-213ENST00000511496 GVINP1Q7Z2Y8 2422 aa8.67□□□□□ -1.02
LIMCH1-213ENST00000511496 Q6ZTI0 123 aa8.67□□□□□ -1.02
LIMCH1-213ENST00000511496 OBSCN-AS1Q96MR7 158 aa8.67□□□□□ -1.02
LIMCH1-213ENST00000511496 LINC00467Q9BRT7 94 aa8.67□□□□□ -1.02
LIMCH1-213ENST00000511496 SND1-IT1Q9HBX3 110 aa8.67□□□□□ -1.02
LIMCH1-213ENST00000511496 ORMDL1Q9P0S3 153 aa8.67□□□□□ -1.02
LIMCH1-213ENST00000511496 A0A087WZ39 114 aa8.67□□□□□ -1.02
LIMCH1-213ENST00000511496 IGHV3-16A0A0C4DH30 117 aa8.67□□□□□ -1.02
LIMCH1-213ENST00000511496 C6orf226Q5I0X4 101 aa8.67□□□□□ -1.02
LIMCH1-213ENST00000511496 C11orf72Q8NBR9 251 aa8.67□□□□□ -1.02
LIMCH1-213ENST00000511496 LPAL2Q16609 132 aa8.66□□□□□ -1.02
LIMCH1-213ENST00000511496 U3KQE9 123 aa8.66□□□□□ -1.02
LIMCH1-213ENST00000511496 A0A1W2PNU3 283 aaPredicted RBP8.66□□□□□ -1.02
LIMCH1-213ENST00000511496 ATP5EP2Q5VTU8 51 aa8.66□□□□□ -1.02
LIMCH1-213ENST00000511496 FDCSPQ8NFU4 85 aa8.66□□□□□ -1.02
LIMCH1-213ENST00000511496 H0YGX0 51 aa8.65□□□□□ -1.03
LIMCH1-213ENST00000511496 LRBAP50851 2863 aa8.64□□□□□ -1.03
LIMCH1-213ENST00000511496 IGKV2-28A0A075B6P5 120 aa8.64□□□□□ -1.03
LIMCH1-213ENST00000511496 IGKV2D-28P01615 120 aa8.64□□□□□ -1.03
LIMCH1-213ENST00000511496 Q96MF0 132 aa8.64□□□□□ -1.03
LIMCH1-213ENST00000511496 TOMM7Q9P0U1 55 aa8.64□□□□□ -1.03
LIMCH1-213ENST00000511496 KLLNB2CW77 178 aa8.63□□□□□ -1.03
LIMCH1-213ENST00000511496 SAA4P35542 130 aa8.63□□□□□ -1.03
LIMCH1-213ENST00000511496 IGFL2Q6UWQ7 119 aa8.63□□□□□ -1.03
LIMCH1-213ENST00000511496 Q8N9W7 124 aa8.63□□□□□ -1.03
LIMCH1-213ENST00000511496 ASH1LQ9NR48 2969 aaKnown RBP8.63□□□□□ -1.03
LIMCH1-213ENST00000511496 LRCOL1A6NCL2 159 aa8.63□□□□□ -1.03
LIMCH1-213ENST00000511496 LINC00158P58513 81 aa8.63□□□□□ -1.03
LIMCH1-213ENST00000511496 APRG1Q8IVJ8 170 aa8.63□□□□□ -1.03
LIMCH1-213ENST00000511496 CHCHD7Q9BUK0 85 aa8.63□□□□□ -1.03
LIMCH1-213ENST00000511496 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.63□□□□□ -1.03
LIMCH1-213ENST00000511496 PF4P02776 101 aa8.63□□□□□ -1.03
LIMCH1-213ENST00000511496 IGHV3-11P01762 117 aa8.62□□□□□ -1.03
LIMCH1-213ENST00000511496 TM2D3Q9BRN9 247 aa8.62□□□□□ -1.03
LIMCH1-213ENST00000511496 NOTCH3Q9UM47 2321 aa8.62□□□□□ -1.03
LIMCH1-213ENST00000511496 SMIM1B2RUZ4 78 aa8.62□□□□□ -1.03
LIMCH1-213ENST00000511496 LY6HO94772 140 aa8.62□□□□□ -1.03
LIMCH1-213ENST00000511496 MIFP14174 115 aa8.62□□□□□ -1.03
LIMCH1-213ENST00000511496 PAX4O43316 350 aa8.61□□□□□ -1.03
LIMCH1-213ENST00000511496 SPINK13Q1W4C9 94 aa8.61□□□□□ -1.03
LIMCH1-213ENST00000511496 LINC00242Q5T6M2 205 aa8.61□□□□□ -1.03
LIMCH1-213ENST00000511496 ZFHX3Q15911 3703 aa8.61□□□□□ -1.03
LIMCH1-213ENST00000511496 IGHV3OR16-12A0A075B7B8 117 aa8.61□□□□□ -1.03
LIMCH1-213ENST00000511496 IGLV5-39A0A0G2JS06 123 aa8.61□□□□□ -1.03
LIMCH1-213ENST00000511496 FAM215AQ9Y5M1 114 aa8.61□□□□□ -1.03
LIMCH1-213ENST00000511496 MINOS1Q5TGZ0 78 aa8.6□□□□□ -1.03
LIMCH1-213ENST00000511496 RHPN1-AS1Q9BWJ2 59 aa8.6□□□□□ -1.03
LIMCH1-213ENST00000511496 PRM2P04554 102 aa8.6□□□□□ -1.03
LIMCH1-213ENST00000511496 TRBV10-3A0A0K0K1G6 114 aa8.59□□□□□ -1.03
LIMCH1-213ENST00000511496 JMJD7-PLA2G4BH0Y9G9 81 aa8.59□□□□□ -1.03
LIMCH1-213ENST00000511496 SCXQ7RTU7 201 aa8.59□□□□□ -1.03
LIMCH1-213ENST00000511496 DAD1P61803 113 aa8.58□□□□□ -1.04
LIMCH1-213ENST00000511496 Q6ZSN1 163 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms