RNA–Protein interactions for RNA: ENST00000505705.1

LIMCH1-206, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 3

Gene LIMCH1, Length 437 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-206ENST00000505705 REG3AQ06141 175 aa5.54□□□□□ -1.52
LIMCH1-206ENST00000505705 C2orf66Q6UXQ4 117 aa5.54□□□□□ -1.52
LIMCH1-206ENST00000505705 TM2D2Q9BX73 214 aa5.54□□□□□ -1.52
LIMCH1-206ENST00000505705 AP5S1Q9NUS5 200 aa5.54□□□□□ -1.52
LIMCH1-206ENST00000505705 CYSLTR1Q9Y271 337 aa5.54□□□□□ -1.52
LIMCH1-206ENST00000505705 UBE2D4Q9Y2X8 147 aa5.54□□□□□ -1.52
LIMCH1-206ENST00000505705 KMT2CQ8NEZ4 4911 aaKnown RBP5.54□□□□□ -1.52
LIMCH1-206ENST00000505705 KMT2AQ03164 3969 aa5.54□□□□□ -1.52
LIMCH1-206ENST00000505705 MRPL52Q86TS9 123 aaKnown RBP5.53□□□□□ -1.52
LIMCH1-206ENST00000505705 ZNF664Q8N3J9 261 aa5.53□□□□□ -1.52
LIMCH1-206ENST00000505705 C1orf43Q9BWL3 253 aa5.53□□□□□ -1.52
LIMCH1-206ENST00000505705 RYR2Q92736 4967 aa5.53□□□□□ -1.52
LIMCH1-206ENST00000505705 IGLV10-54A0A075B6I4 117 aa5.52□□□□□ -1.53
LIMCH1-206ENST00000505705 LINC01549A6NIU2 74 aa5.52□□□□□ -1.53
LIMCH1-206ENST00000505705 MIAQ16674 131 aa5.52□□□□□ -1.53
LIMCH1-206ENST00000505705 RNASE13Q5GAN3 156 aaKnown RBP5.52□□□□□ -1.53
LIMCH1-206ENST00000505705 ENHOQ6UWT2 76 aa5.52□□□□□ -1.53
LIMCH1-206ENST00000505705 Q6ZN92 141 aa5.52□□□□□ -1.53
LIMCH1-206ENST00000505705 SCGB3A1Q96QR1 104 aa5.52□□□□□ -1.53
LIMCH1-206ENST00000505705 TIMM21Q9BVV7 248 aa5.52□□□□□ -1.53
LIMCH1-206ENST00000505705 CDC42SE2Q9NRR3 84 aa5.52□□□□□ -1.53
LIMCH1-206ENST00000505705 SPANXA1Q9NS26 97 aa5.52□□□□□ -1.53
LIMCH1-206ENST00000505705 CSDC2Q9Y534 153 aaKnown RBP5.52□□□□□ -1.53
LIMCH1-206ENST00000505705 COX11Q9Y6N1 276 aa5.52□□□□□ -1.53
LIMCH1-206ENST00000505705 VPS13DQ5THJ4 4388 aa5.52□□□□□ -1.53
LIMCH1-206ENST00000505705 SACSQ9NZJ4 4579 aa5.52□□□□□ -1.53
LIMCH1-206ENST00000505705 TRAV8-4A0A0B4J246 113 aa5.51□□□□□ -1.53
LIMCH1-206ENST00000505705 C1orf196B1AJZ1 125 aa5.51□□□□□ -1.53
LIMCH1-206ENST00000505705 HSBP1O75506 76 aa5.51□□□□□ -1.53
LIMCH1-206ENST00000505705 SS18Q15532 418 aa5.51□□□□□ -1.53
LIMCH1-206ENST00000505705 PMCHL1Q16048 86 aa5.51□□□□□ -1.53
LIMCH1-206ENST00000505705 PAPPA-AS1Q5QFB9 102 aa5.51□□□□□ -1.53
LIMCH1-206ENST00000505705 TEX43Q6ZNM6 134 aa5.51□□□□□ -1.53
LIMCH1-206ENST00000505705 TOMM6Q96B49 74 aa5.51□□□□□ -1.53
LIMCH1-206ENST00000505705 CHCHD1Q96BP2 118 aaKnown RBP5.51□□□□□ -1.53
LIMCH1-206ENST00000505705 VCX2Q9H322 139 aa5.51□□□□□ -1.53
LIMCH1-206ENST00000505705 PRR34Q9NV39 138 aa5.51□□□□□ -1.53
LIMCH1-206ENST00000505705 DNAH1Q9P2D7 4330 aa5.5□□□□□ -1.53
LIMCH1-206ENST00000505705 TRAV13-1A0A0B4J241 112 aa5.5□□□□□ -1.53
LIMCH1-206ENST00000505705 LINC01546A6NGU7 62 aa5.5□□□□□ -1.53
LIMCH1-206ENST00000505705 PRSS29PA6NIE9 313 aa5.5□□□□□ -1.53
LIMCH1-206ENST00000505705 EREGO14944 169 aa5.5□□□□□ -1.53
LIMCH1-206ENST00000505705 RTL8CO15255 209 aa5.5□□□□□ -1.53
LIMCH1-206ENST00000505705 HBDP02042 147 aa5.5□□□□□ -1.53
LIMCH1-206ENST00000505705 LINC00336Q6ZUF6 198 aa5.5□□□□□ -1.53
LIMCH1-206ENST00000505705 Q6ZUT4 128 aa5.5□□□□□ -1.53
LIMCH1-206ENST00000505705 TMEM141Q96I45 108 aa5.5□□□□□ -1.53
LIMCH1-206ENST00000505705 OPRPNQ99935 248 aaPredicted RBP5.5□□□□□ -1.53
LIMCH1-206ENST00000505705 C2orf88Q9BSF0 95 aa5.5□□□□□ -1.53
LIMCH1-206ENST00000505705 PYGO1Q9Y3Y4 419 aa5.5□□□□□ -1.53
LIMCH1-206ENST00000505705 LINC00959A0A1B0GUT2 108 aa5.49□□□□□ -1.53
LIMCH1-206ENST00000505705 IFITM10A6NMD0 228 aa5.49□□□□□ -1.53
LIMCH1-206ENST00000505705 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.49□□□□□ -1.53
LIMCH1-206ENST00000505705 NDUFA6P56556 154 aa5.49□□□□□ -1.53
LIMCH1-206ENST00000505705 MRPS36P82909 103 aaKnown RBP5.49□□□□□ -1.53
LIMCH1-206ENST00000505705 ERASQ7Z444 233 aa5.49□□□□□ -1.53
LIMCH1-206ENST00000505705 CHCHD10Q8WYQ3 142 aaPredicted RBP5.49□□□□□ -1.53
LIMCH1-206ENST00000505705 URB1-AS1Q96HZ7 61 aa5.49□□□□□ -1.53
LIMCH1-206ENST00000505705 TIMM17AQ99595 171 aa5.49□□□□□ -1.53
LIMCH1-206ENST00000505705 RYR3Q15413 4870 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 IGLV4-3A0A075B6K6 122 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 GAGE12HA6NDE8 117 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 IGIPA6NJ69 53 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 CCL25O15444 150 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 HIST1H2BKO60814 126 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 SERF1AO75920 110 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 HIST1H2BJP06899 126 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 HIST1H2BOP23527 126 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 HIST1H2BBP33778 126 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 XCL1P47992 114 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 HIST1H2BDP58876 126 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 HIST1H2BCP62807 126 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 HIST2H2BEQ16778 126 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 FAM19A2Q8N3H0 131 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 BAALCQ8WXS3 180 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 HIST1H2BHQ93079 126 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 HIST1H2BNQ99877 126 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 HIST1H2BMQ99879 126 aa5.48□□□□□ -1.53
LIMCH1-206ENST00000505705 DNAH6Q9C0G6 4158 aa5.47□□□□□ -1.53
LIMCH1-206ENST00000505705 ATP5LO75964 103 aa5.47□□□□□ -1.53
LIMCH1-206ENST00000505705 NPSP0C0P6 89 aa5.47□□□□□ -1.53
LIMCH1-206ENST00000505705 Q6ZRN7 208 aaPredicted RBP5.47□□□□□ -1.53
LIMCH1-206ENST00000505705 KRTAP4-8Q9BYQ9 185 aa5.47□□□□□ -1.53
LIMCH1-206ENST00000505705 LECT2O14960 151 aa5.46□□□□□ -1.54
LIMCH1-206ENST00000505705 LEPROTL1O95214 131 aa5.46□□□□□ -1.54
LIMCH1-206ENST00000505705 PRSS1P07477 247 aa5.46□□□□□ -1.54
LIMCH1-206ENST00000505705 FABP4P15090 132 aa5.46□□□□□ -1.54
LIMCH1-206ENST00000505705 MALP21145 153 aa5.46□□□□□ -1.54
LIMCH1-206ENST00000505705 ZC2HC1BQ5TFG8 222 aa5.46□□□□□ -1.54
LIMCH1-206ENST00000505705 CD164L2Q6UWJ8 174 aa5.46□□□□□ -1.54
LIMCH1-206ENST00000505705 A0A087WTM6 91 aa5.45□□□□□ -1.54
LIMCH1-206ENST00000505705 A0A096LNJ9 63 aa5.45□□□□□ -1.54
LIMCH1-206ENST00000505705 H0Y8G0 127 aa5.45□□□□□ -1.54
LIMCH1-206ENST00000505705 NUPR1O60356 82 aa5.45□□□□□ -1.54
LIMCH1-206ENST00000505705 S100A6P06703 90 aa5.45□□□□□ -1.54
LIMCH1-206ENST00000505705 SEC11AP67812 179 aa5.45□□□□□ -1.54
LIMCH1-206ENST00000505705 PMVKQ15126 192 aa5.45□□□□□ -1.54
LIMCH1-206ENST00000505705 C14orf177Q52M58 125 aa5.45□□□□□ -1.54
LIMCH1-206ENST00000505705 PDZD11Q5EBL8 140 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms