RNA–Protein interactions for RNA: ENST00000505199.5

SNCA-208, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 411 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-208ENST00000505199 CDC42SE2Q9NRR3 84 aa8.33□□□□□ -1.08
SNCA-208ENST00000505199 CYSLTR1Q9Y271 337 aa8.33□□□□□ -1.08
SNCA-208ENST00000505199 LOC389332A0A1B0GUA5 103 aa8.32□□□□□ -1.08
SNCA-208ENST00000505199 IFI27P40305 119 aaPredicted RBP8.32□□□□□ -1.08
SNCA-208ENST00000505199 PAPPA-AS1Q5QFB9 102 aa8.32□□□□□ -1.08
SNCA-208ENST00000505199 Q9HAA7 133 aa8.32□□□□□ -1.08
SNCA-208ENST00000505199 COLCA2A8K830 154 aa8.31□□□□□ -1.08
SNCA-208ENST00000505199 C18orf32Q8TCD1 76 aa8.31□□□□□ -1.08
SNCA-208ENST00000505199 AP5S1Q9NUS5 200 aa8.31□□□□□ -1.08
SNCA-208ENST00000505199 IGKV2D-24A0A075B6R9 120 aa8.3□□□□□ -1.08
SNCA-208ENST00000505199 A0A1B0GVY2 172 aa8.3□□□□□ -1.08
SNCA-208ENST00000505199 CDPF1Q6NVV7 123 aa8.3□□□□□ -1.08
SNCA-208ENST00000505199 C2orf66Q6UXQ4 117 aa8.3□□□□□ -1.08
SNCA-208ENST00000505199 DEFB104AQ8WTQ1 72 aa8.3□□□□□ -1.08
SNCA-208ENST00000505199 TIMM17AQ99595 171 aa8.3□□□□□ -1.08
SNCA-208ENST00000505199 A0A087WTM6 91 aa8.29□□□□□ -1.08
SNCA-208ENST00000505199 C1orf196B1AJZ1 125 aa8.29□□□□□ -1.08
SNCA-208ENST00000505199 TNP2Q05952 138 aa8.29□□□□□ -1.08
SNCA-208ENST00000505199 C14orf177Q52M58 125 aa8.29□□□□□ -1.08
SNCA-208ENST00000505199 FA2HQ7L5A8 372 aa8.29□□□□□ -1.08
SNCA-208ENST00000505199 NTN5Q8WTR8 489 aaPredicted RBP8.29□□□□□ -1.08
SNCA-208ENST00000505199 LRCOL1A6NCL2 159 aa8.28□□□□□ -1.08
SNCA-208ENST00000505199 LINC00614P0C842 121 aa8.28□□□□□ -1.08
SNCA-208ENST00000505199 RPL39P62891 51 aaKnown RBP8.28□□□□□ -1.08
SNCA-208ENST00000505199 TOMM6Q96B49 74 aa8.28□□□□□ -1.08
SNCA-208ENST00000505199 CHCHD1Q96BP2 118 aaKnown RBP8.28□□□□□ -1.08
SNCA-208ENST00000505199 PGPEP1Q9NXJ5 209 aa8.28□□□□□ -1.08
SNCA-208ENST00000505199 IGIPA6NJ69 53 aa8.27□□□□□ -1.09
SNCA-208ENST00000505199 ATP6V1G1O75348 118 aa8.27□□□□□ -1.09
SNCA-208ENST00000505199 TRGC2P03986 189 aa8.27□□□□□ -1.09
SNCA-208ENST00000505199 SS18Q15532 418 aa8.27□□□□□ -1.09
SNCA-208ENST00000505199 KRTAP26-1Q6PEX3 210 aa8.27□□□□□ -1.09
SNCA-208ENST00000505199 Q6ZN92 141 aa8.27□□□□□ -1.09
SNCA-208ENST00000505199 ERASQ7Z444 233 aa8.27□□□□□ -1.09
SNCA-208ENST00000505199 TMEM141Q96I45 108 aa8.27□□□□□ -1.09
SNCA-208ENST00000505199 LINC00959A0A1B0GUT2 108 aa8.26□□□□□ -1.09
SNCA-208ENST00000505199 CD164L2Q6UWJ8 174 aa8.26□□□□□ -1.09
SNCA-208ENST00000505199 FRAS1Q86XX4 4008 aa8.26□□□□□ -1.09
SNCA-208ENST00000505199 CLPSL2Q6UWE3 100 aa8.25□□□□□ -1.09
SNCA-208ENST00000505199 TEX43Q6ZNM6 134 aa8.25□□□□□ -1.09
SNCA-208ENST00000505199 Q8N814 137 aa8.25□□□□□ -1.09
SNCA-208ENST00000505199 MAPKAPK5-AS1Q8N8E1 139 aa8.25□□□□□ -1.09
SNCA-208ENST00000505199 CHCHD10Q8WYQ3 142 aaPredicted RBP8.25□□□□□ -1.09
SNCA-208ENST00000505199 FAM104AQ969W3 186 aa8.25□□□□□ -1.09
SNCA-208ENST00000505199 IGLV4-3A0A075B6K6 122 aa8.24□□□□□ -1.09
SNCA-208ENST00000505199 SEC11AP67812 179 aa8.24□□□□□ -1.09
SNCA-208ENST00000505199 CFAP161Q6P656 301 aa8.24□□□□□ -1.09
SNCA-208ENST00000505199 Q6ZUT4 128 aa8.24□□□□□ -1.09
SNCA-208ENST00000505199 FAM19A3Q7Z5A8 133 aa8.24□□□□□ -1.09
SNCA-208ENST00000505199 AMELXQ99217 191 aa8.24□□□□□ -1.09
SNCA-208ENST00000505199 C2orf88Q9BSF0 95 aa8.24□□□□□ -1.09
SNCA-208ENST00000505199 HBDP02042 147 aa8.23□□□□□ -1.09
SNCA-208ENST00000505199 VCX2Q9H322 139 aa8.23□□□□□ -1.09
SNCA-208ENST00000505199 IGLV10-54A0A075B6I4 117 aa8.22□□□□□ -1.09
SNCA-208ENST00000505199 URB1-AS1Q96HZ7 61 aa8.22□□□□□ -1.09
SNCA-208ENST00000505199 SCGB3A1Q96QR1 104 aa8.22□□□□□ -1.09
SNCA-208ENST00000505199 IFITM10A6NMD0 228 aa8.21□□□□□ -1.1
SNCA-208ENST00000505199 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.21□□□□□ -1.1
SNCA-208ENST00000505199 SCO1O75880 301 aa8.21□□□□□ -1.1
SNCA-208ENST00000505199 ATP5LO75964 103 aa8.21□□□□□ -1.1
SNCA-208ENST00000505199 FOXI1Q12951 378 aa8.21□□□□□ -1.1
SNCA-208ENST00000505199 BAGE3Q86Y29 109 aa8.21□□□□□ -1.1
SNCA-208ENST00000505199 BAALCQ8WXS3 180 aa8.21□□□□□ -1.1
SNCA-208ENST00000505199 DNAH2Q9P225 4427 aa8.21□□□□□ -1.1
SNCA-208ENST00000505199 A0A096LNJ9 63 aa8.2□□□□□ -1.1
SNCA-208ENST00000505199 TRAV13-1A0A0B4J241 112 aa8.2□□□□□ -1.1
SNCA-208ENST00000505199 IGHV3OR16-9A0A0B4J2B5 98 aa8.2□□□□□ -1.1
SNCA-208ENST00000505199 IGKV3OR2-268A0A0C4DH90 116 aa8.2□□□□□ -1.1
SNCA-208ENST00000505199 GAGE12HA6NDE8 117 aa8.2□□□□□ -1.1
SNCA-208ENST00000505199 USP17L23D6RBM5 183 aa8.2□□□□□ -1.1
SNCA-208ENST00000505199 HSBP1O75506 76 aa8.2□□□□□ -1.1
SNCA-208ENST00000505199 XCL1P47992 114 aa8.2□□□□□ -1.1
SNCA-208ENST00000505199 PDZD11Q5EBL8 140 aa8.2□□□□□ -1.1
SNCA-208ENST00000505199 SPATA12Q7Z6I5 190 aa8.2□□□□□ -1.1
SNCA-208ENST00000505199 LINC01561Q8N1V8 128 aa8.2□□□□□ -1.1
SNCA-208ENST00000505199 GVQW2A0A096LPI5 108 aaPredicted RBP8.19□□□□□ -1.1
SNCA-208ENST00000505199 IGHV1-58A0A0C4DH39 117 aa8.19□□□□□ -1.1
SNCA-208ENST00000505199 COX7A2LO14548 114 aa8.19□□□□□ -1.1
SNCA-208ENST00000505199 APOMO95445 188 aa8.19□□□□□ -1.1
SNCA-208ENST00000505199 UBE2D1P51668 147 aa8.19□□□□□ -1.1
SNCA-208ENST00000505199 CNBPP62633 177 aaKnown RBP8.19□□□□□ -1.1
SNCA-208ENST00000505199 LINC00173Q6ZV60 143 aa8.19□□□□□ -1.1
SNCA-208ENST00000505199 OPRPNQ99935 248 aaPredicted RBP8.19□□□□□ -1.1
SNCA-208ENST00000505199 FAT2Q9NYQ8 4349 aa8.18□□□□□ -1.1
SNCA-208ENST00000505199 F8WDY8 70 aa8.18□□□□□ -1.1
SNCA-208ENST00000505199 HERVK_113P63121 156 aa8.18□□□□□ -1.1
SNCA-208ENST00000505199 PMVKQ15126 192 aa8.18□□□□□ -1.1
SNCA-208ENST00000505199 LINC00242Q5T6M2 205 aa8.18□□□□□ -1.1
SNCA-208ENST00000505199 HECTD4Q9Y4D8 3996 aa8.18□□□□□ -1.1
SNCA-208ENST00000505199 A0A087WZ39 114 aa8.17□□□□□ -1.1
SNCA-208ENST00000505199 HIST1H2BKO60814 126 aa8.17□□□□□ -1.1
SNCA-208ENST00000505199 HIST1H2BJP06899 126 aa8.17□□□□□ -1.1
SNCA-208ENST00000505199 HIST1H2BOP23527 126 aa8.17□□□□□ -1.1
SNCA-208ENST00000505199 HIST1H2BBP33778 126 aa8.17□□□□□ -1.1
SNCA-208ENST00000505199 HIST1H2BDP58876 126 aa8.17□□□□□ -1.1
SNCA-208ENST00000505199 KRTAP10-2P60368 255 aa8.17□□□□□ -1.1
SNCA-208ENST00000505199 HIST1H2BCP62807 126 aa8.17□□□□□ -1.1
SNCA-208ENST00000505199 WFDC2Q14508 124 aa8.17□□□□□ -1.1
SNCA-208ENST00000505199 HIST2H2BEQ16778 126 aa8.17□□□□□ -1.1
SNCA-208ENST00000505199 RNASE13Q5GAN3 156 aaKnown RBP8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms