RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 RAB5BP61020 215 aa10.41□□□□□ -0.74
VIM-208ENST00000497849 A0A087WYN8 130 aa10.4□□□□□ -0.74
VIM-208ENST00000497849 PHOX2AO14813 284 aa10.4□□□□□ -0.74
VIM-208ENST00000497849 SUMO4Q6EEV6 95 aa10.4□□□□□ -0.74
VIM-208ENST00000497849 TMA7Q9Y2S6 64 aaKnown RBP10.4□□□□□ -0.74
VIM-208ENST00000497849 TRAV26-2A0A0B4J265 109 aa10.39□□□□□ -0.75
VIM-208ENST00000497849 CRPP02741 224 aa10.39□□□□□ -0.75
VIM-208ENST00000497849 FAM104BQ5XKR9 115 aa10.39□□□□□ -0.75
VIM-208ENST00000497849 CHTF8P0CG12 524 aa10.38□□□□□ -0.75
VIM-208ENST00000497849 KIAA1644Q3SXP7 199 aa10.38□□□□□ -0.75
VIM-208ENST00000497849 KRTAP26-1Q6PEX3 210 aa10.38□□□□□ -0.75
VIM-208ENST00000497849 AMN1Q8IY45 258 aa10.38□□□□□ -0.75
VIM-208ENST00000497849 RNF185Q96GF1 192 aa10.38□□□□□ -0.75
VIM-208ENST00000497849 TMEM262E9PQX1 116 aa10.37□□□□□ -0.75
VIM-208ENST00000497849 MPV17L2Q567V2 206 aa10.37□□□□□ -0.75
VIM-208ENST00000497849 SMKR1H3BMG3 65 aa10.36□□□□□ -0.75
VIM-208ENST00000497849 M0QY20 66 aa10.36□□□□□ -0.75
VIM-208ENST00000497849 RAB4AP20338 218 aa10.36□□□□□ -0.75
VIM-208ENST00000497849 MRPL51Q4U2R6 128 aaKnown RBP10.36□□□□□ -0.75
VIM-208ENST00000497849 NEXN-AS1Q8NBZ9 246 aa10.36□□□□□ -0.75
VIM-208ENST00000497849 SPACA4Q8TDM5 124 aa10.36□□□□□ -0.75
VIM-208ENST00000497849 DPH3Q96FX2 82 aa10.36□□□□□ -0.75
VIM-208ENST00000497849 FAT4Q6V0I7 4981 aa10.35□□□□□ -0.75
VIM-208ENST00000497849 KRTAP9-6A0A140TA67 174 aa10.35□□□□□ -0.75
VIM-208ENST00000497849 HIST1H2BKO60814 126 aa10.35□□□□□ -0.75
VIM-208ENST00000497849 ANGP03950 147 aaKnown RBP10.35□□□□□ -0.75
VIM-208ENST00000497849 HIST1H2BJP06899 126 aa10.35□□□□□ -0.75
VIM-208ENST00000497849 HIST1H2BOP23527 126 aa10.35□□□□□ -0.75
VIM-208ENST00000497849 HIST1H2BBP33778 126 aa10.35□□□□□ -0.75
VIM-208ENST00000497849 HIST1H2BDP58876 126 aa10.35□□□□□ -0.75
VIM-208ENST00000497849 CNBPP62633 177 aaKnown RBP10.35□□□□□ -0.75
VIM-208ENST00000497849 HIST1H2BCP62807 126 aa10.35□□□□□ -0.75
VIM-208ENST00000497849 MIAQ16674 131 aa10.35□□□□□ -0.75
VIM-208ENST00000497849 HIST2H2BEQ16778 126 aa10.35□□□□□ -0.75
VIM-208ENST00000497849 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.35□□□□□ -0.75
VIM-208ENST00000497849 HIST1H2BHQ93079 126 aa10.35□□□□□ -0.75
VIM-208ENST00000497849 RPL39LQ96EH5 51 aaKnown RBP10.35□□□□□ -0.75
VIM-208ENST00000497849 HIST1H2BNQ99877 126 aa10.35□□□□□ -0.75
VIM-208ENST00000497849 HIST1H2BMQ99879 126 aa10.35□□□□□ -0.75
VIM-208ENST00000497849 PLAC8Q9NZF1 115 aa10.35□□□□□ -0.75
VIM-208ENST00000497849 CKS2P33552 79 aa10.34□□□□□ -0.75
VIM-208ENST00000497849 UBE2D3P61077 147 aa10.34□□□□□ -0.75
VIM-208ENST00000497849 UBE2D2P62837 147 aa10.34□□□□□ -0.75
VIM-208ENST00000497849 ALKBH7Q9BT30 221 aaPredicted RBP10.34□□□□□ -0.75
VIM-208ENST00000497849 TRBV6-8A0A0A6YYG3 113 aa10.33□□□□□ -0.76
VIM-208ENST00000497849 NCR2O95944 276 aa10.33□□□□□ -0.76
VIM-208ENST00000497849 PPBPP02775 128 aa10.33□□□□□ -0.76
VIM-208ENST00000497849 SLPIP03973 132 aa10.33□□□□□ -0.76
VIM-208ENST00000497849 PRR3P79522 188 aaKnown RBP10.33□□□□□ -0.76
VIM-208ENST00000497849 ORMDL3Q8N138 153 aa10.33□□□□□ -0.76
VIM-208ENST00000497849 MRAP2Q96G30 205 aa10.33□□□□□ -0.76
VIM-208ENST00000497849 TRBV10-1A0A0K0K1A3 114 aa10.32□□□□□ -0.76
VIM-208ENST00000497849 D6R8Y8 96 aa10.32□□□□□ -0.76
VIM-208ENST00000497849 RPL36AP83881 106 aaKnown RBP10.32□□□□□ -0.76
VIM-208ENST00000497849 C7orf33Q8WU49 177 aa10.32□□□□□ -0.76
VIM-208ENST00000497849 RPL36ALQ969Q0 106 aaKnown RBP10.32□□□□□ -0.76
VIM-208ENST00000497849 PRELID3AQ96N28 172 aa10.32□□□□□ -0.76
VIM-208ENST00000497849 PRR34Q9NV39 138 aa10.32□□□□□ -0.76
VIM-208ENST00000497849 TRBV7-3A0A075B6L6 115 aa10.31□□□□□ -0.76
VIM-208ENST00000497849 IGHV3-64A0A075B6Q5 118 aa10.31□□□□□ -0.76
VIM-208ENST00000497849 S100A6P06703 90 aa10.31□□□□□ -0.76
VIM-208ENST00000497849 NIT2Q9NQR4 276 aa10.31□□□□□ -0.76
VIM-208ENST00000497849 H7C1H1 209 aa10.3□□□□□ -0.76
VIM-208ENST00000497849 NDUFA6P56556 154 aa10.3□□□□□ -0.76
VIM-208ENST00000497849 CLPSL2Q6UWE3 100 aa10.3□□□□□ -0.76
VIM-208ENST00000497849 LAMTOR2Q9Y2Q5 125 aa10.3□□□□□ -0.76
VIM-208ENST00000497849 hDV102S1A0JD36 115 aa10.29□□□□□ -0.76
VIM-208ENST00000497849 C18orf32Q8TCD1 76 aa10.29□□□□□ -0.76
VIM-208ENST00000497849 PPP1R17O96001 155 aa10.28□□□□□ -0.76
VIM-208ENST00000497849 NPYP01303 97 aa10.28□□□□□ -0.76
VIM-208ENST00000497849 BAGE3Q86Y29 109 aa10.28□□□□□ -0.76
VIM-208ENST00000497849 NRACQ8N912 160 aa10.28□□□□□ -0.76
VIM-208ENST00000497849 TNFRSF6BO95407 300 aa10.27□□□□□ -0.77
VIM-208ENST00000497849 IQCJQ1A5X6 159 aa10.27□□□□□ -0.77
VIM-208ENST00000497849 REG3GQ6UW15 175 aa10.27□□□□□ -0.77
VIM-208ENST00000497849 SPINK6Q6UWN8 80 aa10.27□□□□□ -0.77
VIM-208ENST00000497849 LINC00269Q8N2A0 174 aa10.27□□□□□ -0.77
VIM-208ENST00000497849 CHCHD5Q9BSY4 110 aa10.27□□□□□ -0.77
VIM-208ENST00000497849 MAP1LC3AQ9H492 121 aa10.27□□□□□ -0.77
VIM-208ENST00000497849 COA6Q5JTJ3 125 aaKnown RBP10.26□□□□□ -0.77
VIM-208ENST00000497849 NTM-AS1Q6ZSK4 140 aa10.26□□□□□ -0.77
VIM-208ENST00000497849 IGLV10-54A0A075B6I4 117 aa10.25□□□□□ -0.77
VIM-208ENST00000497849 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.25□□□□□ -0.77
VIM-208ENST00000497849 RBX1P62877 108 aa10.25□□□□□ -0.77
VIM-208ENST00000497849 ST20Q9HBF5 79 aa10.25□□□□□ -0.77
VIM-208ENST00000497849 TRBV6-5A0A0K0K1A5 114 aa10.24□□□□□ -0.77
VIM-208ENST00000497849 LOC389332A0A1B0GUA5 103 aa10.24□□□□□ -0.77
VIM-208ENST00000497849 SDHAF1A6NFY7 115 aa10.24□□□□□ -0.77
VIM-208ENST00000497849 PKIAP61925 76 aa10.24□□□□□ -0.77
VIM-208ENST00000497849 SNRPEP62304 92 aaKnown RBP10.24□□□□□ -0.77
VIM-208ENST00000497849 SRSF9Q13242 221 aaKnown RBP eCLIP10.24□□□□□ -0.77
VIM-208ENST00000497849 PRSS3P2Q8NHM4 247 aa10.24□□□□□ -0.77
VIM-208ENST00000497849 C20orf78Q9BR46 151 aa10.24□□□□□ -0.77
VIM-208ENST00000497849 AP5S1Q9NUS5 200 aa10.24□□□□□ -0.77
VIM-208ENST00000497849 C5orf52A6NGY3 159 aa10.23□□□□□ -0.77
VIM-208ENST00000497849 SERF1AO75920 110 aa10.23□□□□□ -0.77
VIM-208ENST00000497849 POLR2KP53803 58 aaKnown RBP10.23□□□□□ -0.77
VIM-208ENST00000497849 COX6A2Q02221 97 aa10.23□□□□□ -0.77
VIM-208ENST00000497849 PRSS47A8MTI9 375 aa10.22□□□□□ -0.77
VIM-208ENST00000497849 PMCHP20382 165 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms