RNA–Protein interactions for RNA: ENST00000493886.5

VCP-207, Transcript of valosin containing protein, humanhuman

TSL 2

Gene VCP, Length 2,942 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-207ENST00000493886 PRM2P04554 102 aa10.05□□□□□ -0.8
VCP-207ENST00000493886 HERVK_113P63121 156 aa10.05□□□□□ -0.8
VCP-207ENST00000493886 SMR3AQ99954 134 aa10.05□□□□□ -0.8
VCP-207ENST00000493886 SPANXA1Q9NS26 97 aa10.05□□□□□ -0.8
VCP-207ENST00000493886 V9GYY9 64 aa10.05□□□□□ -0.8
VCP-207ENST00000493886 FASNP49327 2511 aaKnown RBP10.04□□□□□ -0.8
VCP-207ENST00000493886 JMJD1CQ15652 2540 aa10.04□□□□□ -0.8
VCP-207ENST00000493886 TRBV27A0A0K0K1C4 114 aa10.04□□□□□ -0.8
VCP-207ENST00000493886 FAM236AA0A1B0GUQ0 79 aa10.04□□□□□ -0.8
VCP-207ENST00000493886 FAM236BA0A1B0GV22 79 aa10.04□□□□□ -0.8
VCP-207ENST00000493886 IGHV3-73A0A0B4J1V6 119 aa10.03□□□□□ -0.8
VCP-207ENST00000493886 IGIPA6NJ69 53 aa10.03□□□□□ -0.8
VCP-207ENST00000493886 TRPT1Q86TN4 253 aaKnown RBP10.03□□□□□ -0.8
VCP-207ENST00000493886 ZNRF2Q8NHG8 242 aa10.03□□□□□ -0.8
VCP-207ENST00000493886 INSP01308 110 aa10.03□□□□□ -0.8
VCP-207ENST00000493886 ZNF415Q09FC8 603 aa10.03□□□□□ -0.8
VCP-207ENST00000493886 PMVKQ15126 192 aa10.03□□□□□ -0.8
VCP-207ENST00000493886 C10orf126Q8N4M7 172 aa10.03□□□□□ -0.8
VCP-207ENST00000493886 NIPBLQ6KC79 2804 aaeCLIP10.03□□□□□ -0.8
VCP-207ENST00000493886 C9orf153Q5TBE3 101 aa10.02□□□□□ -0.81
VCP-207ENST00000493886 PPDPFLQ8WWR9 84 aa10.02□□□□□ -0.81
VCP-207ENST00000493886 M0R2P5 195 aa10.02□□□□□ -0.81
VCP-207ENST00000493886 STHQ8IWL8 128 aa10.02□□□□□ -0.81
VCP-207ENST00000493886 ATP6V0E2Q8NHE4 81 aa10.01□□□□□ -0.81
VCP-207ENST00000493886 LINC00467Q9BRT7 94 aa10.01□□□□□ -0.81
VCP-207ENST00000493886 PSMB2P49721 201 aa10.01□□□□□ -0.81
VCP-207ENST00000493886 HERVK_113P61574 105 aa10.01□□□□□ -0.81
VCP-207ENST00000493886 NDUFA7O95182 113 aa10□□□□□ -0.81
VCP-207ENST00000493886 HIVEP2P31629 2446 aa10□□□□□ -0.81
VCP-207ENST00000493886 XCL2Q9UBD3 114 aa10□□□□□ -0.81
VCP-207ENST00000493886 A0A0J9YY99 117 aa10□□□□□ -0.81
VCP-207ENST00000493886 C11orf72Q8NBR9 251 aa10□□□□□ -0.81
VCP-207ENST00000493886 A8MWV9 139 aa10□□□□□ -0.81
VCP-207ENST00000493886 P0DMU3 169 aa10□□□□□ -0.81
VCP-207ENST00000493886 FAM231AP0DMU4 169 aa10□□□□□ -0.81
VCP-207ENST00000493886 FAM231CP0DMU5 169 aa10□□□□□ -0.81
VCP-207ENST00000493886 PROK1P58294 105 aa10□□□□□ -0.81
VCP-207ENST00000493886 PIK3CD-AS1Q5SR53 167 aa10□□□□□ -0.81
VCP-207ENST00000493886 GCN1Q92616 2671 aaKnown RBP9.99□□□□□ -0.81
VCP-207ENST00000493886 ADARB2-AS1A8MUL3 147 aa9.99□□□□□ -0.81
VCP-207ENST00000493886 CFAP126Q5VTH2 177 aa9.99□□□□□ -0.81
VCP-207ENST00000493886 TMEM262E9PQX1 116 aa9.99□□□□□ -0.81
VCP-207ENST00000493886 LY6G6DO95868 133 aa9.99□□□□□ -0.81
VCP-207ENST00000493886 NSUN5P1Q3KNT7 163 aa9.99□□□□□ -0.81
VCP-207ENST00000493886 RHOHQ15669 191 aa9.98□□□□□ -0.81
VCP-207ENST00000493886 RNASE13Q5GAN3 156 aaKnown RBP9.98□□□□□ -0.81
VCP-207ENST00000493886 H7C2G1 150 aa9.98□□□□□ -0.81
VCP-207ENST00000493886 TMEM141Q96I45 108 aa9.98□□□□□ -0.81
VCP-207ENST00000493886 TIMM17AQ99595 171 aa9.98□□□□□ -0.81
VCP-207ENST00000493886 HECTD1Q9ULT8 2610 aa9.97□□□□□ -0.81
VCP-207ENST00000493886 I3L3M4 83 aa9.97□□□□□ -0.81
VCP-207ENST00000493886 UBE2D1P51668 147 aa9.97□□□□□ -0.81
VCP-207ENST00000493886 J3QQQ9 107 aa9.97□□□□□ -0.81
VCP-207ENST00000493886 LGALS3P17931 250 aaKnown RBP9.97□□□□□ -0.81
VCP-207ENST00000493886 IL17DQ8TAD2 202 aa9.97□□□□□ -0.81
VCP-207ENST00000493886 CEMP1Q6PRD7 247 aaPredicted RBP9.96□□□□□ -0.81
VCP-207ENST00000493886 C1orf158Q8N1D5 194 aa9.96□□□□□ -0.81
VCP-207ENST00000493886 A0A0J9YXV3 536 aa9.96□□□□□ -0.81
VCP-207ENST00000493886 A0A1B0GX51 115 aa9.96□□□□□ -0.81
VCP-207ENST00000493886 NDUFA11Q86Y39 141 aa9.96□□□□□ -0.81
VCP-207ENST00000493886 Q9UF83 564 aa9.96□□□□□ -0.81
VCP-207ENST00000493886 IGHV3OR16-12A0A075B7B8 117 aa9.96□□□□□ -0.82
VCP-207ENST00000493886 A0A0U1RRA0 63 aa9.96□□□□□ -0.82
VCP-207ENST00000493886 IGLV1-51P01701 117 aa9.96□□□□□ -0.82
VCP-207ENST00000493886 CMC4P56277 68 aaPredicted RBP9.95□□□□□ -0.82
VCP-207ENST00000493886 BEAN1Q3B7T3 259 aa9.95□□□□□ -0.82
VCP-207ENST00000493886 PAPPA-AS1Q5QFB9 102 aa9.95□□□□□ -0.82
VCP-207ENST00000493886 TEN1Q86WV5 123 aa9.95□□□□□ -0.82
VCP-207ENST00000493886 PRO0628Q9UI54 55 aa9.95□□□□□ -0.82
VCP-207ENST00000493886 IGHV3-30P01768 117 aa9.95□□□□□ -0.82
VCP-207ENST00000493886 CFC1BP0CG36 223 aa9.95□□□□□ -0.82
VCP-207ENST00000493886 CFC1P0CG37 223 aa9.95□□□□□ -0.82
VCP-207ENST00000493886 IGHV3-30-5P0DP03 117 aa9.95□□□□□ -0.82
VCP-207ENST00000493886 Q6ZSN1 163 aa9.94□□□□□ -0.82
VCP-207ENST00000493886 C20orf203Q8NBC4 194 aa9.94□□□□□ -0.82
VCP-207ENST00000493886 FAM236DA0A1B0GTK5 79 aa9.94□□□□□ -0.82
VCP-207ENST00000493886 FAM236CP0DP71 79 aa9.94□□□□□ -0.82
VCP-207ENST00000493886 AMELXQ99217 191 aa9.94□□□□□ -0.82
VCP-207ENST00000493886 MALP21145 153 aa9.93□□□□□ -0.82
VCP-207ENST00000493886 C15orf53Q8NAA6 179 aa9.93□□□□□ -0.82
VCP-207ENST00000493886 NOTCH2Q04721 2471 aa9.93□□□□□ -0.82
VCP-207ENST00000493886 TCL1BO95988 128 aa9.93□□□□□ -0.82
VCP-207ENST00000493886 SCGB1C2P0DMR2 95 aa9.93□□□□□ -0.82
VCP-207ENST00000493886 KRTAP10-3P60369 221 aa9.93□□□□□ -0.82
VCP-207ENST00000493886 LINC00336Q6ZUF6 198 aa9.93□□□□□ -0.82
VCP-207ENST00000493886 SLC25A29Q8N8R3 303 aa9.93□□□□□ -0.82
VCP-207ENST00000493886 WFDC10AQ9H1F0 79 aa9.93□□□□□ -0.82
VCP-207ENST00000493886 ZNF22P17026 224 aaPredicted RBP9.92□□□□□ -0.82
VCP-207ENST00000493886 Q5XG85 94 aa9.92□□□□□ -0.82
VCP-207ENST00000493886 Q6Q795 121 aa9.92□□□□□ -0.82
VCP-207ENST00000493886 SETXQ7Z333 2677 aaKnown RBP9.92□□□□□ -0.82
VCP-207ENST00000493886 C19orf73Q9NVV2 129 aa9.92□□□□□ -0.82
VCP-207ENST00000493886 IGLV4-3A0A075B6K6 122 aa9.91□□□□□ -0.82
VCP-207ENST00000493886 IGHV3-53P01767 116 aa9.91□□□□□ -0.82
VCP-207ENST00000493886 TRAV8-3A0A0A6YYJ7 113 aa9.91□□□□□ -0.82
VCP-207ENST00000493886 OXTP01178 125 aa9.91□□□□□ -0.82
VCP-207ENST00000493886 ANKRD29Q8N6D5 301 aa9.91□□□□□ -0.82
VCP-207ENST00000493886 TMEM223A0PJW6 202 aa9.9□□□□□ -0.82
VCP-207ENST00000493886 GIG44P09565 113 aaPredicted RBP9.9□□□□□ -0.82
VCP-207ENST00000493886 UBE2D3P61077 147 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms