RNA–Protein interactions for RNA: ENST00000491789.1

VPS45-209, Transcript of vacuolar protein sorting 45 homolog, human

TSL 3

Gene VPS45, Length 976 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS45-209	ENST00000491789	RPL35A	P18077	110 aa	Known RBP	5.25	□□□□□ -1.57
VPS45-209	ENST00000491789	MRPS36	P82909	103 aa	Known RBP	5.25	□□□□□ -1.57
VPS45-209	ENST00000491789	VCX2	Q9H322	139 aa		5.25	□□□□□ -1.57
VPS45-209	ENST00000491789	IGLV4-69	A0A075B6H9	119 aa		5.24	□□□□□ -1.57
VPS45-209	ENST00000491789	IGLV4-3	A0A075B6K6	122 aa		5.24	□□□□□ -1.57
VPS45-209	ENST00000491789	TRGV2	A0A075B6R0	118 aa		5.24	□□□□□ -1.57
VPS45-209	ENST00000491789		H7C423	109 aa		5.24	□□□□□ -1.57
VPS45-209	ENST00000491789		P0DMU3	169 aa		5.24	□□□□□ -1.57
VPS45-209	ENST00000491789	FAM231A	P0DMU4	169 aa		5.24	□□□□□ -1.57
VPS45-209	ENST00000491789	FAM231C	P0DMU5	169 aa		5.24	□□□□□ -1.57
VPS45-209	ENST00000491789	RPL39	P62891	51 aa	Known RBP	5.24	□□□□□ -1.57
VPS45-209	ENST00000491789	PCP2	Q8IVA1	136 aa		5.24	□□□□□ -1.57
VPS45-209	ENST00000491789	AMELX	Q99217	191 aa		5.24	□□□□□ -1.57
VPS45-209	ENST00000491789	CHAC1	Q9BUX1	264 aa		5.24	□□□□□ -1.57
VPS45-209	ENST00000491789	GTSF1L	Q9H1H1	148 aa		5.24	□□□□□ -1.57
VPS45-209	ENST00000491789	CSDC2	Q9Y534	153 aa	Known RBP	5.24	□□□□□ -1.57
VPS45-209	ENST00000491789	COX11	Q9Y6N1	276 aa		5.24	□□□□□ -1.57
VPS45-209	ENST00000491789		X6R8D5	127 aa		5.24	□□□□□ -1.57
VPS45-209	ENST00000491789	RYR3	Q15413	4870 aa		5.23	□□□□□ -1.57
VPS45-209	ENST00000491789	TRBV25-1	A0A075B6N4	114 aa		5.23	□□□□□ -1.57
VPS45-209	ENST00000491789	IGKV2D-26	A0A0A0MRZ7	120 aa		5.23	□□□□□ -1.57
VPS45-209	ENST00000491789	IGHV3-73	A0A0B4J1V6	119 aa		5.23	□□□□□ -1.57
VPS45-209	ENST00000491789	MYMX	A0A1B0GTQ4	84 aa		5.23	□□□□□ -1.57
VPS45-209	ENST00000491789	PLAC8L1	A1L4L8	177 aa		5.23	□□□□□ -1.57
VPS45-209	ENST00000491789	LYRM9	A8MSI8	78 aa		5.23	□□□□□ -1.57
VPS45-209	ENST00000491789	UBE2D3	P61077	147 aa		5.23	□□□□□ -1.57
VPS45-209	ENST00000491789	UBE2D2	P62837	147 aa		5.23	□□□□□ -1.57
VPS45-209	ENST00000491789		Q6ZTI0	123 aa		5.23	□□□□□ -1.57
VPS45-209	ENST00000491789	LINC00612	Q8N6U2	182 aa		5.23	□□□□□ -1.57
VPS45-209	ENST00000491789	PLEKHB2	Q96CS7	222 aa		5.23	□□□□□ -1.57
VPS45-209	ENST00000491789	B9D2	Q9BPU9	175 aa		5.23	□□□□□ -1.57
VPS45-209	ENST00000491789	PRADC1	Q9BSG0	188 aa		5.23	□□□□□ -1.57
VPS45-209	ENST00000491789	NOP10	Q9NPE3	64 aa	Known RBP	5.23	□□□□□ -1.57
VPS45-209	ENST00000491789	MUC4	Q99102	2169 aa		5.23	□□□□□ -1.57
VPS45-209	ENST00000491789	TRAV8-6	A0A0B4J262	113 aa		5.22	□□□□□ -1.57
VPS45-209	ENST00000491789	TRGV4	A0A0C4DH28	118 aa		5.22	□□□□□ -1.57
VPS45-209	ENST00000491789	TEX48	A0A1B0GUV7	120 aa		5.22	□□□□□ -1.57
VPS45-209	ENST00000491789		H3BRM9	83 aa		5.22	□□□□□ -1.57
VPS45-209	ENST00000491789	TMEM170B	Q5T4T1	132 aa		5.22	□□□□□ -1.57
VPS45-209	ENST00000491789	DGAT2L7P	Q6IED9	249 aa		5.22	□□□□□ -1.57
VPS45-209	ENST00000491789	ZNF479	Q96JC4	524 aa		5.22	□□□□□ -1.57
VPS45-209	ENST00000491789	CHCHD7	Q9BUK0	85 aa		5.22	□□□□□ -1.57
VPS45-209	ENST00000491789	TM2D2	Q9BX73	214 aa		5.22	□□□□□ -1.57
VPS45-209	ENST00000491789	WFDC10A	Q9H1F0	79 aa		5.22	□□□□□ -1.57
VPS45-209	ENST00000491789	UBE2D4	Q9Y2X8	147 aa		5.22	□□□□□ -1.57
VPS45-209	ENST00000491789	TINCR	A0A1B0GVN0	87 aa		5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	GAGE12B	A1L429	117 aa		5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	C9orf118	A6NHY6	69 aa		5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	ZNF815P	A8K554	130 aa		5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	LEPROT	O15243	131 aa		5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	GAGE7	O76087	117 aa		5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	GAGE12F	P0CL80	117 aa		5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	GAGE12G	P0CL81	117 aa		5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	GAGE12I	P0CL82	117 aa		5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	ZNF25	P17030	456 aa	Predicted RBP	5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	LGALS3	P17931	250 aa	Known RBP	5.21	□□□□□ -1.58
VPS45-209	ENST00000491789		Q6ZSN1	163 aa		5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	LINC00469	Q8N7U9	141 aa		5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	ZNRF2	Q8NHG8	242 aa		5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	WWC2-AS2	Q96NR7	200 aa		5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	SORL1	Q92673	2214 aa		5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	HUWE1	Q7Z6Z7	4374 aa	Known RBP	5.21	□□□□□ -1.58
VPS45-209	ENST00000491789	TMEM223	A0PJW6	202 aa		5.2	□□□□□ -1.58
VPS45-209	ENST00000491789	UBE2L6	O14933	153 aa		5.2	□□□□□ -1.58
VPS45-209	ENST00000491789	PRM2	P04554	102 aa		5.2	□□□□□ -1.58
VPS45-209	ENST00000491789	MIF	P14174	115 aa		5.2	□□□□□ -1.58
VPS45-209	ENST00000491789	ZNF22	P17026	224 aa	Predicted RBP	5.2	□□□□□ -1.58
VPS45-209	ENST00000491789	TIRAP	P58753	221 aa		5.2	□□□□□ -1.58
VPS45-209	ENST00000491789	SCGB1D4	Q6XE38	83 aa		5.2	□□□□□ -1.58
VPS45-209	ENST00000491789	FAM19A3	Q7Z5A8	133 aa		5.2	□□□□□ -1.58
VPS45-209	ENST00000491789	CEND1	Q8N111	149 aa		5.2	□□□□□ -1.58
VPS45-209	ENST00000491789	SLC25A29	Q8N8R3	303 aa		5.2	□□□□□ -1.58
VPS45-209	ENST00000491789	TMEM101	Q96IK0	257 aa		5.2	□□□□□ -1.58
VPS45-209	ENST00000491789	HIST1H4G	Q99525	98 aa		5.2	□□□□□ -1.58
VPS45-209	ENST00000491789	TMEM243	Q9BU79	118 aa		5.2	□□□□□ -1.58
VPS45-209	ENST00000491789	SPANXB1	Q9NS25	103 aa	Predicted RBP	5.2	□□□□□ -1.58
VPS45-209	ENST00000491789	TP73-AS1	Q9UF72	201 aa		5.2	□□□□□ -1.58
VPS45-209	ENST00000491789		J3QQQ9	107 aa		5.19	□□□□□ -1.58
VPS45-209	ENST00000491789	TAX1BP3	O14907	124 aa		5.19	□□□□□ -1.58
VPS45-209	ENST00000491789	SMIM13	P0DJ93	91 aa		5.19	□□□□□ -1.58
VPS45-209	ENST00000491789	LINC00694	P0DN24	101 aa		5.19	□□□□□ -1.58
VPS45-209	ENST00000491789	GCSH	P23434	173 aa		5.19	□□□□□ -1.58
VPS45-209	ENST00000491789	PTTG1IP	P53801	180 aa		5.19	□□□□□ -1.58
VPS45-209	ENST00000491789	KRTAP10-2	P60368	255 aa		5.19	□□□□□ -1.58
VPS45-209	ENST00000491789	HERVK_113	P63121	156 aa		5.19	□□□□□ -1.58
VPS45-209	ENST00000491789	OR5A1	Q8NGJ0	315 aa		5.19	□□□□□ -1.58
VPS45-209	ENST00000491789	GEMIN7	Q9H840	131 aa	Known RBP	5.19	□□□□□ -1.58
VPS45-209	ENST00000491789	IGLV5-45	A0A087WSX0	123 aa		5.18	□□□□□ -1.58
VPS45-209	ENST00000491789		A0A0J9YXV3	536 aa		5.18	□□□□□ -1.58
VPS45-209	ENST00000491789	GAGE12J	A6NER3	117 aa		5.18	□□□□□ -1.58
VPS45-209	ENST00000491789	TMEM238	C9JI98	176 aa		5.18	□□□□□ -1.58
VPS45-209	ENST00000491789	NHLRC4	P0CG21	123 aa	Predicted RBP	5.18	□□□□□ -1.58
VPS45-209	ENST00000491789	UBE2D1	P51668	147 aa		5.18	□□□□□ -1.58
VPS45-209	ENST00000491789	TCTA	P57738	103 aa		5.18	□□□□□ -1.58
VPS45-209	ENST00000491789	GAGE4	Q13068	117 aa		5.18	□□□□□ -1.58
VPS45-209	ENST00000491789	GAGE5	Q13069	117 aa		5.18	□□□□□ -1.58
VPS45-209	ENST00000491789	FHL2	Q14192	279 aa		5.18	□□□□□ -1.58
VPS45-209	ENST00000491789	VAMP3	Q15836	100 aa		5.18	□□□□□ -1.58
VPS45-209	ENST00000491789	GAGE13	Q4V321	117 aa		5.18	□□□□□ -1.58
VPS45-209	ENST00000491789	AMMECR1L	Q6DCA0	310 aa		5.18	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms