RNA–Protein interactions for RNA: ENST00000490348.1

SRGAP3-208, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 2

Gene SRGAP3, Length 1,554 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-208ENST00000490348 MIAQ16674 131 aa9.52□□□□□ -0.89
SRGAP3-208ENST00000490348 AMMECR1LQ6DCA0 310 aa9.52□□□□□ -0.89
SRGAP3-208ENST00000490348 RNASEKQ6P5S7 137 aaKnown RBP9.52□□□□□ -0.89
SRGAP3-208ENST00000490348 SPATA12Q7Z6I5 190 aa9.52□□□□□ -0.89
SRGAP3-208ENST00000490348 MRPL52Q86TS9 123 aaKnown RBP9.52□□□□□ -0.89
SRGAP3-208ENST00000490348 C5orf52A6NGY3 159 aa9.51□□□□□ -0.89
SRGAP3-208ENST00000490348 SMIM6P0DI80 62 aa9.51□□□□□ -0.89
SRGAP3-208ENST00000490348 APOBP04114 4563 aaKnown RBP9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 LECT2O14960 151 aa9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 ZNF25P17030 456 aaPredicted RBP9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 RPL39P62891 51 aaKnown RBP9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 RMI2Q96E14 147 aa9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 C1orf43Q9BWL3 253 aa9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 MRPL18Q9H0U6 180 aaKnown RBP9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 MAP1LC3AQ9H492 121 aa9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 UBE2D4Q9Y2X8 147 aa9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 COX11Q9Y6N1 276 aa9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 IGLV10-54A0A075B6I4 117 aa9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 MT-ND6P03923 174 aa9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 COX19Q49B96 90 aa9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 BAALCQ8WXS3 180 aa9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 FAM104AQ969W3 186 aa9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 ALKBH7Q9BT30 221 aaPredicted RBP9.5□□□□□ -0.89
SRGAP3-208ENST00000490348 RYR1P21817 5038 aa9.49□□□□□ -0.89
SRGAP3-208ENST00000490348 Q8N8P6 123 aa9.49□□□□□ -0.89
SRGAP3-208ENST00000490348 C12orf57Q99622 126 aa9.49□□□□□ -0.89
SRGAP3-208ENST00000490348 CDC42SE2Q9NRR3 84 aa9.49□□□□□ -0.89
SRGAP3-208ENST00000490348 IFI27P40305 119 aaPredicted RBP9.48□□□□□ -0.89
SRGAP3-208ENST00000490348 FABP9Q0Z7S8 132 aa9.48□□□□□ -0.89
SRGAP3-208ENST00000490348 Q8N814 137 aa9.48□□□□□ -0.89
SRGAP3-208ENST00000490348 OR5A1Q8NGJ0 315 aa9.48□□□□□ -0.89
SRGAP3-208ENST00000490348 IGKV3OR2-268A0A0C4DH90 116 aa9.47□□□□□ -0.89
SRGAP3-208ENST00000490348 SNRPEP62304 92 aaKnown RBP9.47□□□□□ -0.89
SRGAP3-208ENST00000490348 TMEM101Q96IK0 257 aa9.47□□□□□ -0.89
SRGAP3-208ENST00000490348 CSDC2Q9Y534 153 aaKnown RBP9.47□□□□□ -0.89
SRGAP3-208ENST00000490348 HSPG2P98160 4391 aa9.47□□□□□ -0.89
SRGAP3-208ENST00000490348 TRAV8-4A0A0B4J246 113 aa9.46□□□□□ -0.89
SRGAP3-208ENST00000490348 ZNF664Q8N3J9 261 aa9.46□□□□□ -0.89
SRGAP3-208ENST00000490348 HERC2O95714 4834 aa9.46□□□□□ -0.9
SRGAP3-208ENST00000490348 C16orf90A8MZG2 172 aa9.46□□□□□ -0.9
SRGAP3-208ENST00000490348 EREGO14944 169 aa9.46□□□□□ -0.9
SRGAP3-208ENST00000490348 RNASE13Q5GAN3 156 aaKnown RBP9.46□□□□□ -0.9
SRGAP3-208ENST00000490348 Q6ZUT4 128 aa9.46□□□□□ -0.9
SRGAP3-208ENST00000490348 TIMM21Q9BVV7 248 aa9.46□□□□□ -0.9
SRGAP3-208ENST00000490348 TRAPPC1Q9Y5R8 145 aa9.46□□□□□ -0.9
SRGAP3-208ENST00000490348 OPRPNQ99935 248 aaPredicted RBP9.45□□□□□ -0.9
SRGAP3-208ENST00000490348 NXT2Q9NPJ8 142 aaKnown RBP9.45□□□□□ -0.9
SRGAP3-208ENST00000490348 DNAH8Q96JB1 4490 aa9.44□□□□□ -0.9
SRGAP3-208ENST00000490348 LINC00959A0A1B0GUT2 108 aa9.44□□□□□ -0.9
SRGAP3-208ENST00000490348 DGAT2L7PQ6IED9 249 aa9.44□□□□□ -0.9
SRGAP3-208ENST00000490348 TMEM18Q96B42 140 aa9.44□□□□□ -0.9
SRGAP3-208ENST00000490348 PGPEP1Q9NXJ5 209 aa9.44□□□□□ -0.9
SRGAP3-208ENST00000490348 CHCHD10Q8WYQ3 142 aaPredicted RBP9.43□□□□□ -0.9
SRGAP3-208ENST00000490348 SPANXA1Q9NS26 97 aa9.43□□□□□ -0.9
SRGAP3-208ENST00000490348 GAGE12HA6NDE8 117 aa9.42□□□□□ -0.9
SRGAP3-208ENST00000490348 LINC01546A6NGU7 62 aa9.42□□□□□ -0.9
SRGAP3-208ENST00000490348 USP17L23D6RBM5 183 aa9.42□□□□□ -0.9
SRGAP3-208ENST00000490348 K7EMI3 77 aa9.42□□□□□ -0.9
SRGAP3-208ENST00000490348 CDPF1Q6NVV7 123 aa9.42□□□□□ -0.9
SRGAP3-208ENST00000490348 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.41□□□□□ -0.9
SRGAP3-208ENST00000490348 FOXI1Q12951 378 aa9.41□□□□□ -0.9
SRGAP3-208ENST00000490348 ORMDL2Q53FV1 153 aa9.41□□□□□ -0.9
SRGAP3-208ENST00000490348 C2orf66Q6UXQ4 117 aa9.41□□□□□ -0.9
SRGAP3-208ENST00000490348 CCL25O15444 150 aa9.41□□□□□ -0.9
SRGAP3-208ENST00000490348 XCL1P47992 114 aa9.41□□□□□ -0.9
SRGAP3-208ENST00000490348 MRPS36P82909 103 aaKnown RBP9.41□□□□□ -0.9
SRGAP3-208ENST00000490348 SMAGPQ0VAQ4 97 aa9.41□□□□□ -0.9
SRGAP3-208ENST00000490348 PRSS3P2Q8NHM4 247 aa9.41□□□□□ -0.9
SRGAP3-208ENST00000490348 C18orf32Q8TCD1 76 aa9.41□□□□□ -0.9
SRGAP3-208ENST00000490348 NTN5Q8WTR8 489 aaPredicted RBP9.41□□□□□ -0.9
SRGAP3-208ENST00000490348 URB1-AS1Q96HZ7 61 aa9.41□□□□□ -0.9
SRGAP3-208ENST00000490348 PYGO1Q9Y3Y4 419 aa9.41□□□□□ -0.9
SRGAP3-208ENST00000490348 IGLV4-3A0A075B6K6 122 aa9.4□□□□□ -0.9
SRGAP3-208ENST00000490348 IGLV5-52A0A0A0MRZ9 124 aa9.4□□□□□ -0.9
SRGAP3-208ENST00000490348 PCP4L1A6NKN8 68 aa9.4□□□□□ -0.9
SRGAP3-208ENST00000490348 CYSLTR1Q9Y271 337 aa9.4□□□□□ -0.9
SRGAP3-208ENST00000490348 TRAV13-1A0A0B4J241 112 aa9.39□□□□□ -0.91
SRGAP3-208ENST00000490348 IGIPA6NJ69 53 aa9.39□□□□□ -0.91
SRGAP3-208ENST00000490348 PRSS1P07477 247 aa9.39□□□□□ -0.91
SRGAP3-208ENST00000490348 KRTAP10-1P60331 282 aa9.39□□□□□ -0.91
SRGAP3-208ENST00000490348 CTAG1AP78358 180 aa9.39□□□□□ -0.91
SRGAP3-208ENST00000490348 C15orf56Q8N910 161 aa9.38□□□□□ -0.91
SRGAP3-208ENST00000490348 S100A2P29034 98 aa9.37□□□□□ -0.91
SRGAP3-208ENST00000490348 SS18Q15532 418 aa9.37□□□□□ -0.91
SRGAP3-208ENST00000490348 ZC2HC1BQ5TFG8 222 aa9.37□□□□□ -0.91
SRGAP3-208ENST00000490348 TOMM6Q96B49 74 aa9.37□□□□□ -0.91
SRGAP3-208ENST00000490348 GCSHP23434 173 aa9.37□□□□□ -0.91
SRGAP3-208ENST00000490348 LINC01620Q4KN68 170 aa9.37□□□□□ -0.91
SRGAP3-208ENST00000490348 CD164L2Q6UWJ8 174 aa9.37□□□□□ -0.91
SRGAP3-208ENST00000490348 LINC00173Q6ZV60 143 aa9.37□□□□□ -0.91
SRGAP3-208ENST00000490348 TMEM141Q96I45 108 aa9.37□□□□□ -0.91
SRGAP3-208ENST00000490348 A0A096LNJ9 63 aa9.36□□□□□ -0.91
SRGAP3-208ENST00000490348 HIST1H2BKO60814 126 aa9.36□□□□□ -0.91
SRGAP3-208ENST00000490348 TRGC2P03986 189 aa9.36□□□□□ -0.91
SRGAP3-208ENST00000490348 HIST1H2BJP06899 126 aa9.36□□□□□ -0.91
SRGAP3-208ENST00000490348 HIST1H2BOP23527 126 aa9.36□□□□□ -0.91
SRGAP3-208ENST00000490348 HIST1H2BBP33778 126 aa9.36□□□□□ -0.91
SRGAP3-208ENST00000490348 HIST1H2BDP58876 126 aa9.36□□□□□ -0.91
SRGAP3-208ENST00000490348 HIST1H2BCP62807 126 aa9.36□□□□□ -0.91
SRGAP3-208ENST00000490348 HIST2H2BEQ16778 126 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms