RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 FAM213BQ8TBF2 198 aa9.67□□□□□ -0.86
USP48-210ENST00000489108 PMCHP20382 165 aa9.66□□□□□ -0.86
USP48-210ENST00000489108 MALP21145 153 aa9.66□□□□□ -0.86
USP48-210ENST00000489108 EIF5AL1Q6IS14 154 aaKnown RBP9.66□□□□□ -0.86
USP48-210ENST00000489108 CDC42SE2Q9NRR3 84 aa9.66□□□□□ -0.86
USP48-210ENST00000489108 RAB19A4D1S5 217 aa9.65□□□□□ -0.86
USP48-210ENST00000489108 BCL2L11O43521 198 aa9.65□□□□□ -0.86
USP48-210ENST00000489108 TSPAN13O95857 204 aa9.65□□□□□ -0.86
USP48-210ENST00000489108 ESDP10768 282 aa9.65□□□□□ -0.86
USP48-210ENST00000489108 RPL13AP40429 203 aaKnown RBP9.65□□□□□ -0.86
USP48-210ENST00000489108 FAM168BA1KXE4 195 aa9.64□□□□□ -0.87
USP48-210ENST00000489108 I3L3M4 83 aa9.64□□□□□ -0.87
USP48-210ENST00000489108 COX7A2LO14548 114 aa9.64□□□□□ -0.87
USP48-210ENST00000489108 CTRLP40313 264 aa9.64□□□□□ -0.87
USP48-210ENST00000489108 FOXA3P55318 350 aaPredicted RBP9.64□□□□□ -0.87
USP48-210ENST00000489108 C11orf52Q96A22 123 aa9.64□□□□□ -0.87
USP48-210ENST00000489108 C2orf48Q96LS8 159 aa9.64□□□□□ -0.87
USP48-210ENST00000489108 TSHBP01222 138 aa9.62□□□□□ -0.87
USP48-210ENST00000489108 TSKUQ8WUA8 353 aa9.62□□□□□ -0.87
USP48-210ENST00000489108 CNFNQ9BYD5 112 aa9.62□□□□□ -0.87
USP48-210ENST00000489108 C1orf196B1AJZ1 125 aa9.61□□□□□ -0.87
USP48-210ENST00000489108 ARPC5O15511 151 aa9.61□□□□□ -0.87
USP48-210ENST00000489108 H2AFB1P0C5Y9 115 aa9.61□□□□□ -0.87
USP48-210ENST00000489108 GNG4P50150 75 aa9.61□□□□□ -0.87
USP48-210ENST00000489108 RNF151Q2KHN1 245 aa9.61□□□□□ -0.87
USP48-210ENST00000489108 C5orf38Q86SI9 138 aa9.61□□□□□ -0.87
USP48-210ENST00000489108 MRPL52Q86TS9 123 aaKnown RBP9.61□□□□□ -0.87
USP48-210ENST00000489108 MRAP2Q96G30 205 aa9.61□□□□□ -0.87
USP48-210ENST00000489108 TMEM242Q9NWH2 141 aa9.61□□□□□ -0.87
USP48-210ENST00000489108 UMAD1C9J7I0 102 aa9.6□□□□□ -0.87
USP48-210ENST00000489108 G3V3Q6 166 aa9.6□□□□□ -0.87
USP48-210ENST00000489108 CCL20P78556 96 aa9.6□□□□□ -0.87
USP48-210ENST00000489108 TEX261Q6UWH6 196 aa9.6□□□□□ -0.87
USP48-210ENST00000489108 NUDT10Q8NFP7 164 aa9.6□□□□□ -0.87
USP48-210ENST00000489108 NUDT11Q96G61 164 aa9.6□□□□□ -0.87
USP48-210ENST00000489108 FAM19A5Q7Z5A7 132 aaPredicted RBP9.59□□□□□ -0.87
USP48-210ENST00000489108 SMIM12Q96EX1 92 aa9.59□□□□□ -0.87
USP48-210ENST00000489108 GNG13Q9P2W3 67 aa9.59□□□□□ -0.87
USP48-210ENST00000489108 CARHSP1Q9Y2V2 147 aaKnown RBP9.59□□□□□ -0.87
USP48-210ENST00000489108 TRBV6-5A0A0K0K1A5 114 aa9.58□□□□□ -0.88
USP48-210ENST00000489108 SPAG11BQ08648 103 aa9.58□□□□□ -0.88
USP48-210ENST00000489108 SMIM15Q7Z3B0 74 aa9.58□□□□□ -0.88
USP48-210ENST00000489108 TRBV20OR9-2A0A075B6H5 130 aa9.57□□□□□ -0.88
USP48-210ENST00000489108 RNASE13Q5GAN3 156 aaKnown RBP9.57□□□□□ -0.88
USP48-210ENST00000489108 KRTAP7-1Q8IUC3 87 aa9.57□□□□□ -0.88
USP48-210ENST00000489108 RNASE7Q9H1E1 156 aaKnown RBP9.57□□□□□ -0.88
USP48-210ENST00000489108 MANBALQ9NQG1 85 aa9.57□□□□□ -0.88
USP48-210ENST00000489108 BIN3Q9NQY0 253 aa9.57□□□□□ -0.88
USP48-210ENST00000489108 MUC17Q685J3 4493 aa9.56□□□□□ -0.88
USP48-210ENST00000489108 TRAV13-1A0A0B4J241 112 aa9.56□□□□□ -0.88
USP48-210ENST00000489108 IMMP2LQ96T52 175 aa9.56□□□□□ -0.88
USP48-210ENST00000489108 ST20Q9HBF5 79 aa9.56□□□□□ -0.88
USP48-210ENST00000489108 MRPL35Q9NZE8 188 aaKnown RBP9.56□□□□□ -0.88
USP48-210ENST00000489108 C7orf77A4D0Y5 90 aa9.55□□□□□ -0.88
USP48-210ENST00000489108 UBE2BP63146 152 aa9.55□□□□□ -0.88
USP48-210ENST00000489108 RPP21Q9H633 154 aaKnown RBP9.55□□□□□ -0.88
USP48-210ENST00000489108 POLR2KP53803 58 aaKnown RBP9.54□□□□□ -0.88
USP48-210ENST00000489108 GAGE2EQ4V326 116 aa9.54□□□□□ -0.88
USP48-210ENST00000489108 C10orf25Q5T742 122 aa9.54□□□□□ -0.88
USP48-210ENST00000489108 FAM210AQ96ND0 272 aa9.54□□□□□ -0.88
USP48-210ENST00000489108 GAGE2DQ9UEU5 116 aa9.54□□□□□ -0.88
USP48-210ENST00000489108 TLX1NBP0CAT3 122 aa9.53□□□□□ -0.88
USP48-210ENST00000489108 KRTAP3-3Q9BYR6 98 aa9.53□□□□□ -0.88
USP48-210ENST00000489108 KRTAP3-2Q9BYR7 98 aa9.53□□□□□ -0.88
USP48-210ENST00000489108 MED9Q9NWA0 146 aa9.53□□□□□ -0.88
USP48-210ENST00000489108 M0QXV9 152 aa9.52□□□□□ -0.89
USP48-210ENST00000489108 OR10D4PQ8NGN7 298 aa9.52□□□□□ -0.89
USP48-210ENST00000489108 ORAOV1Q8WV07 137 aa9.52□□□□□ -0.89
USP48-210ENST00000489108 CSDC2Q9Y534 153 aaKnown RBP9.52□□□□□ -0.89
USP48-210ENST00000489108 TRBV27A0A0K0K1C4 114 aa9.51□□□□□ -0.89
USP48-210ENST00000489108 SMLR1H3BR10 107 aa9.51□□□□□ -0.89
USP48-210ENST00000489108 NDUFA1O15239 70 aa9.51□□□□□ -0.89
USP48-210ENST00000489108 ZNF861PO60384 105 aa9.51□□□□□ -0.89
USP48-210ENST00000489108 UNQ6190/PRO20217Q6UXQ8 127 aa9.51□□□□□ -0.89
USP48-210ENST00000489108 C6orf48Q9UBA6 75 aa9.51□□□□□ -0.89
USP48-210ENST00000489108 UBE2D4Q9Y2X8 147 aa9.51□□□□□ -0.89
USP48-210ENST00000489108 F8WDY8 70 aa9.5□□□□□ -0.89
USP48-210ENST00000489108 TMEM241Q24JQ0 296 aa9.5□□□□□ -0.89
USP48-210ENST00000489108 SMDT1Q9H4I9 107 aa9.5□□□□□ -0.89
USP48-210ENST00000489108 CRCT1Q9UGL9 99 aa9.5□□□□□ -0.89
USP48-210ENST00000489108 A0A087X002 238 aa9.49□□□□□ -0.89
USP48-210ENST00000489108 K7EN84 100 aa9.49□□□□□ -0.89
USP48-210ENST00000489108 PDE6DO43924 150 aa9.49□□□□□ -0.89
USP48-210ENST00000489108 OCC1Q8TAD7 63 aa9.49□□□□□ -0.89
USP48-210ENST00000489108 FSIP2Q5CZC0 6907 aa9.48□□□□□ -0.89
USP48-210ENST00000489108 FCER1GP30273 86 aa9.48□□□□□ -0.89
USP48-210ENST00000489108 Q6ZUT4 128 aa9.48□□□□□ -0.89
USP48-210ENST00000489108 RETNLBQ9BQ08 111 aa9.48□□□□□ -0.89
USP48-210ENST00000489108 CDIP1Q9H305 208 aa9.48□□□□□ -0.89
USP48-210ENST00000489108 VCYO14598 125 aa9.47□□□□□ -0.89
USP48-210ENST00000489108 ZNF345Q14585 488 aa9.47□□□□□ -0.89
USP48-210ENST00000489108 TYMSOSQ8TAI1 123 aa9.47□□□□□ -0.89
USP48-210ENST00000489108 SMAGPQ0VAQ4 97 aa9.46□□□□□ -0.9
USP48-210ENST00000489108 IGHV3OR16-9A0A0B4J2B5 98 aa9.45□□□□□ -0.9
USP48-210ENST00000489108 RAB4AP20338 218 aa9.45□□□□□ -0.9
USP48-210ENST00000489108 C9orf129Q5T035 196 aaKnown RBP9.45□□□□□ -0.9
USP48-210ENST00000489108 KANTRA0A1W2PQU2 76 aa9.44□□□□□ -0.9
USP48-210ENST00000489108 GATCO43716 136 aaKnown RBP9.44□□□□□ -0.9
USP48-210ENST00000489108 A8MWL6 223 aa9.43□□□□□ -0.9
USP48-210ENST00000489108 SMKR1H3BMG3 65 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms