RNA–Protein interactions for RNA: ENST00000488809.2

PTCH1-211, Transcript of patched 1, humanhuman

TSL 3

Gene PTCH1, Length 301 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-211ENST00000488809 CENPWQ5EE01 88 aa3.95□□□□□ -1.78
PTCH1-211ENST00000488809 PHF5AQ7RTV0 110 aaKnown RBP3.95□□□□□ -1.78
PTCH1-211ENST00000488809 GATD1Q8NB37 220 aa3.95□□□□□ -1.78
PTCH1-211ENST00000488809 NUP35Q8NFH5 326 aa3.95□□□□□ -1.78
PTCH1-211ENST00000488809 MBD3L1Q8WWY6 194 aa3.95□□□□□ -1.78
PTCH1-211ENST00000488809 C2orf48Q96LS8 159 aa3.95□□□□□ -1.78
PTCH1-211ENST00000488809 MANBALQ9NQG1 85 aa3.95□□□□□ -1.78
PTCH1-211ENST00000488809 A0A087WZ39 114 aa3.94□□□□□ -1.78
PTCH1-211ENST00000488809 C1orf196B1AJZ1 125 aa3.94□□□□□ -1.78
PTCH1-211ENST00000488809 COX7A2LO14548 114 aa3.94□□□□□ -1.78
PTCH1-211ENST00000488809 ARPC5O15511 151 aa3.94□□□□□ -1.78
PTCH1-211ENST00000488809 H2AFB1P0C5Y9 115 aa3.94□□□□□ -1.78
PTCH1-211ENST00000488809 Q5BKY6 102 aa3.94□□□□□ -1.78
PTCH1-211ENST00000488809 C9orf62Q8N4C0 152 aa3.94□□□□□ -1.78
PTCH1-211ENST00000488809 C11orf52Q96A22 123 aa3.94□□□□□ -1.78
PTCH1-211ENST00000488809 CNFNQ9BYD5 112 aa3.94□□□□□ -1.78
PTCH1-211ENST00000488809 C7orf77A4D0Y5 90 aa3.93□□□□□ -1.78
PTCH1-211ENST00000488809 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.93□□□□□ -1.78
PTCH1-211ENST00000488809 TEX46H3BTG2 121 aa3.93□□□□□ -1.78
PTCH1-211ENST00000488809 BCL2L11O43521 198 aa3.93□□□□□ -1.78
PTCH1-211ENST00000488809 ESDP10768 282 aa3.93□□□□□ -1.78
PTCH1-211ENST00000488809 CCL20P78556 96 aa3.93□□□□□ -1.78
PTCH1-211ENST00000488809 MEF2BQ02080 365 aaPredicted RBP3.93□□□□□ -1.78
PTCH1-211ENST00000488809 RNF151Q2KHN1 245 aa3.93□□□□□ -1.78
PTCH1-211ENST00000488809 MRPL52Q86TS9 123 aaKnown RBP3.93□□□□□ -1.78
PTCH1-211ENST00000488809 RPL39LQ96EH5 51 aaKnown RBP3.93□□□□□ -1.78
PTCH1-211ENST00000488809 IMMP2LQ96T52 175 aa3.93□□□□□ -1.78
PTCH1-211ENST00000488809 CDC42SE2Q9NRR3 84 aa3.93□□□□□ -1.78
PTCH1-211ENST00000488809 CARHSP1Q9Y2V2 147 aaKnown RBP3.93□□□□□ -1.78
PTCH1-211ENST00000488809 F8WDY8 70 aa3.92□□□□□ -1.78
PTCH1-211ENST00000488809 G3V3Q6 166 aa3.92□□□□□ -1.78
PTCH1-211ENST00000488809 PDE6DO43924 150 aa3.92□□□□□ -1.78
PTCH1-211ENST00000488809 UBE2BP63146 152 aa3.92□□□□□ -1.78
PTCH1-211ENST00000488809 SPAG11BQ08648 103 aa3.92□□□□□ -1.78
PTCH1-211ENST00000488809 LCE2AQ5TA79 106 aaPredicted RBP3.92□□□□□ -1.78
PTCH1-211ENST00000488809 OR10D4PQ8NGN7 298 aa3.92□□□□□ -1.78
PTCH1-211ENST00000488809 BORCS7Q96B45 105 aa3.92□□□□□ -1.78
PTCH1-211ENST00000488809 ST20Q9HBF5 79 aa3.92□□□□□ -1.78
PTCH1-211ENST00000488809 CYTL1Q9NRR1 136 aa3.92□□□□□ -1.78
PTCH1-211ENST00000488809 MRPL35Q9NZE8 188 aaKnown RBP3.92□□□□□ -1.78
PTCH1-211ENST00000488809 GNG13Q9P2W3 67 aa3.92□□□□□ -1.78
PTCH1-211ENST00000488809 TRBV6-5A0A0K0K1A5 114 aa3.91□□□□□ -1.78
PTCH1-211ENST00000488809 NDUFA1O15239 70 aa3.91□□□□□ -1.78
PTCH1-211ENST00000488809 ZNF345Q14585 488 aa3.91□□□□□ -1.78
PTCH1-211ENST00000488809 OPRPNQ99935 248 aaPredicted RBP3.91□□□□□ -1.78
PTCH1-211ENST00000488809 RPP21Q9H633 154 aaKnown RBP3.91□□□□□ -1.78
PTCH1-211ENST00000488809 TMEM242Q9NWH2 141 aa3.91□□□□□ -1.78
PTCH1-211ENST00000488809 KANTRA0A1W2PQU2 76 aa3.9□□□□□ -1.79
PTCH1-211ENST00000488809 RAB19A4D1S5 217 aa3.9□□□□□ -1.79
PTCH1-211ENST00000488809 TSHBP01222 138 aa3.9□□□□□ -1.79
PTCH1-211ENST00000488809 KRTAP1-4P0C5Y4 121 aa3.9□□□□□ -1.79
PTCH1-211ENST00000488809 TLX1NBP0CAT3 122 aa3.9□□□□□ -1.79
PTCH1-211ENST00000488809 FCER1GP30273 86 aa3.9□□□□□ -1.79
PTCH1-211ENST00000488809 TMEM241Q24JQ0 296 aa3.9□□□□□ -1.79
PTCH1-211ENST00000488809 FAM19A5Q7Z5A7 132 aaPredicted RBP3.9□□□□□ -1.79
PTCH1-211ENST00000488809 NUDT10Q8NFP7 164 aa3.9□□□□□ -1.79
PTCH1-211ENST00000488809 TMEM18Q96B42 140 aa3.9□□□□□ -1.79
PTCH1-211ENST00000488809 NUDT11Q96G61 164 aa3.9□□□□□ -1.79
PTCH1-211ENST00000488809 MED9Q9NWA0 146 aa3.9□□□□□ -1.79
PTCH1-211ENST00000488809 CSDC2Q9Y534 153 aaKnown RBP3.9□□□□□ -1.79
PTCH1-211ENST00000488809 TRAV13-1A0A0B4J241 112 aa3.89□□□□□ -1.79
PTCH1-211ENST00000488809 TRBV27A0A0K0K1C4 114 aa3.89□□□□□ -1.79
PTCH1-211ENST00000488809 M0QXV9 152 aa3.89□□□□□ -1.79
PTCH1-211ENST00000488809 PPP1R17O96001 155 aa3.89□□□□□ -1.79
PTCH1-211ENST00000488809 C5orf38Q86SI9 138 aa3.89□□□□□ -1.79
PTCH1-211ENST00000488809 ORAOV1Q8WV07 137 aa3.89□□□□□ -1.79
PTCH1-211ENST00000488809 KIR2DL4Q99706 377 aa3.89□□□□□ -1.79
PTCH1-211ENST00000488809 FAM168BA1KXE4 195 aa3.88□□□□□ -1.79
PTCH1-211ENST00000488809 A8MWL6 223 aa3.88□□□□□ -1.79
PTCH1-211ENST00000488809 VCYO14598 125 aa3.88□□□□□ -1.79
PTCH1-211ENST00000488809 NUPR1O60356 82 aa3.88□□□□□ -1.79
PTCH1-211ENST00000488809 TSPAN13O95857 204 aa3.88□□□□□ -1.79
PTCH1-211ENST00000488809 TAGLN2P37802 199 aaKnown RBP3.88□□□□□ -1.79
PTCH1-211ENST00000488809 RNASE7Q9H1E1 156 aaKnown RBP3.88□□□□□ -1.79
PTCH1-211ENST00000488809 UBE2D4Q9Y2X8 147 aa3.88□□□□□ -1.79
PTCH1-211ENST00000488809 TRBV20OR9-2A0A075B6H5 130 aa3.87□□□□□ -1.79
PTCH1-211ENST00000488809 PPP1R2P9O14990 202 aa3.87□□□□□ -1.79
PTCH1-211ENST00000488809 GATCO43716 136 aaKnown RBP3.87□□□□□ -1.79
PTCH1-211ENST00000488809 ZNF861PO60384 105 aa3.87□□□□□ -1.79
PTCH1-211ENST00000488809 POLR2KP53803 58 aaKnown RBP3.87□□□□□ -1.79
PTCH1-211ENST00000488809 FOXA3P55318 350 aaPredicted RBP3.87□□□□□ -1.79
PTCH1-211ENST00000488809 GAGE2EQ4V326 116 aa3.87□□□□□ -1.79
PTCH1-211ENST00000488809 TYMSOSQ8TAI1 123 aa3.87□□□□□ -1.79
PTCH1-211ENST00000488809 CDIP1Q9H305 208 aa3.87□□□□□ -1.79
PTCH1-211ENST00000488809 SMDT1Q9H4I9 107 aa3.87□□□□□ -1.79
PTCH1-211ENST00000488809 GAGE2DQ9UEU5 116 aa3.87□□□□□ -1.79
PTCH1-211ENST00000488809 FSIP2Q5CZC0 6907 aa3.86□□□□□ -1.79
PTCH1-211ENST00000488809 TRBV30A0A0K0K1B3 111 aa3.86□□□□□ -1.79
PTCH1-211ENST00000488809 HMSDA8MTL9 139 aa3.86□□□□□ -1.79
PTCH1-211ENST00000488809 TCAPO15273 167 aa3.86□□□□□ -1.79
PTCH1-211ENST00000488809 CRYGAP11844 174 aa3.86□□□□□ -1.79
PTCH1-211ENST00000488809 RNASE13Q5GAN3 156 aaKnown RBP3.86□□□□□ -1.79
PTCH1-211ENST00000488809 Q6ZUT4 128 aa3.86□□□□□ -1.79
PTCH1-211ENST00000488809 KRTAP11-1Q8IUC1 163 aa3.86□□□□□ -1.79
PTCH1-211ENST00000488809 PACRGQ96M98 296 aaPredicted RBP3.86□□□□□ -1.79
PTCH1-211ENST00000488809 TIMM21Q9BVV7 248 aa3.86□□□□□ -1.79
PTCH1-211ENST00000488809 TMEM191AQ9H0A3 160 aa3.86□□□□□ -1.79
PTCH1-211ENST00000488809 C6orf48Q9UBA6 75 aa3.86□□□□□ -1.79
PTCH1-211ENST00000488809 TGIF2-C20orf24A0A0A6YYL0 155 aa3.85□□□□□ -1.79
PTCH1-211ENST00000488809 A0A1B0GUT8 65 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms